FABIA
John Zhuang
2024-05-15
library(fabia)## Loading required package: Biobase## Loading required package: BiocGenerics##
## Attaching package: 'BiocGenerics'## The following objects are masked from 'package:stats':
##
## IQR, mad, sd, var, xtabs## The following objects are masked from 'package:base':
##
## anyDuplicated, aperm, append, as.data.frame, basename, cbind,
## colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
## get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
## match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
## Position, rank, rbind, Reduce, rownames, sapply, setdiff, table,
## tapply, union, unique, unsplit, which.max, which.min## Welcome to Bioconductor
##
## Vignettes contain introductory material; view with
## 'browseVignettes()'. To cite Bioconductor, see
## 'citation("Biobase")', and for packages 'citation("pkgname")'.## +----------------------------+
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## +----------------------------+## Citation: S. Hochreiter et al.,
## FABIA: Factor Analysis for Bicluster Acquisition,
## Bioinformatics 26(12):1520-1527, 2010.
## BibTex: enter 'toBibtex(citation("fabia"))'
##
## Homepage: http://www.bioinf.jku.at/software/fabia/fabia.html
##
## FABIA Package Version 2.50.0library(ggplot2)
library(ggrepel)data.vertical = readRDS("data/derived/data_vertical_numeric_only.rds")0. Preparation
a) Check again to reassure if colnames are identical before binding
#
identical(colnames(data.vertical$RPPAArray), colnames(data.vertical$RNASeq2GeneNorm))## [1] TRUEidentical(colnames(data.vertical$RNASeq2GeneNorm), colnames(data.vertical$miRNASeqGene))## [1] TRUEb) Merge data into 1 matrix
data.vert.joined = do.call("rbind", list(data.vertical$RPPAArray, data.vertical$RNASeq2GeneNorm, data.vertical$miRNASeqGene))data.fabia = as.matrix(data.vert.joined)1. FABIA
1 Bicluster
set.seed(42)
fabia_1 = fabia(data.fabia, p = 1)## Running FABIA on a 701x43 matrix with## Number of biclusters ---------------- p: 1## Sparseness factor --------------- alpha: 0.01## Number of iterations -------------- cyc: 500## Loading prior parameter ----------- spl: 0## Factor prior parameter ------------ spz: 0.5## Initialization loadings--------- random: 1 = interval## Nonnegative Loadings and Factors ------: 0 = No## Centering ---------------------- center: 2 = median## Quantile scaling (0.75-0.25): ---- norm: 1 = Yes## Scaling loadings per iteration -- scale: 0 = No## Constraint variational parameter -- lap: 1## Max. number of biclusters per row -- nL: 0 = no limit## Max. number of row elements / biclu. lL: 0 = no limit## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500fabia_1
summary(fabia_1)##
## An object of class Factorization
##
## call:
## "fabia"
##
## Number of rows: 701
##
## Number of columns: 43
##
## Number of clusters: 1
##
## Information content of the clusters:
## BC 1 BC sum
## 343.72 343.72
##
##
##
## Information content of the samples:
## Sample 1 Sample 2 Sample 3 Sample 4 Sample 5 Sample 6
## 8.80 7.90 8.14 7.90 6.47 8.90
## Sample 7 Sample 8 Sample 9 Sample 10 Sample 11 Sample 12
## 7.57 7.79 8.84 7.49 8.77 8.77
## Sample 13 Sample 14 Sample 15 Sample 16 Sample 17 Sample 18
## 8.56 8.77 8.70 8.85 8.61 6.50
## Sample 19 Sample 20 Sample 21 Sample 22 Sample 23 Sample 24
## 7.83 7.67 7.49 8.67 7.90 8.63
## Sample 25 Sample 26 Sample 27 Sample 28 Sample 29 Sample 30
## 8.10 7.59 8.69 7.36 7.80 7.11
## Sample 31 Sample 32 Sample 33 Sample 34 Sample 35 Sample 36
## 8.70 7.36 8.51 6.95 6.69 7.90
## Sample 37 Sample 38 Sample 39 Sample 40 Sample 41 Sample 42
## 8.55 7.86 7.26 6.93 8.82 7.57
## Sample 43 Sample sum
## 8.45 343.72
##
## Column clusters / Factors:
## BC 1
## Min. :-1.7368
## 1st Qu.:-1.3918
## Median : 0.0539
## Mean :-0.3724
## 3rd Qu.: 0.4670
## Max. : 0.8026
##
##
## Row clusters / Loadings:
## BC 1
## Min. :-0.5665
## 1st Qu.:-0.1363
## Median :-0.0577
## Mean :-0.0194
## 3rd Qu.: 0.0333
## Max. : 0.8365#plot(fabia_1) # Minimum 2 Dimensions needed
# extractPlot(fabia_1) # Cannot plot loadings & samples2 Biclusters
set.seed(42)
fabia_2 = fabia(data.fabia, p = 2)## Running FABIA on a 701x43 matrix with## Number of biclusters ---------------- p: 2## Sparseness factor --------------- alpha: 0.01## Number of iterations -------------- cyc: 500## Loading prior parameter ----------- spl: 0## Factor prior parameter ------------ spz: 0.5## Initialization loadings--------- random: 1 = interval## Nonnegative Loadings and Factors ------: 0 = No## Centering ---------------------- center: 2 = median## Quantile scaling (0.75-0.25): ---- norm: 1 = Yes## Scaling loadings per iteration -- scale: 0 = No## Constraint variational parameter -- lap: 1## Max. number of biclusters per row -- nL: 0 = no limit## Max. number of row elements / biclu. lL: 0 = no limit## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500fabia_2
summary(fabia_2)##
## An object of class Factorization
##
## call:
## "fabia"
##
## Number of rows: 701
##
## Number of columns: 43
##
## Number of clusters: 2
##
## Information content of the clusters:
## BC 1 BC 2 BC sum
## 370.07 339.68 706.97
##
##
##
## Information content of the samples:
## Sample 1 Sample 2 Sample 3 Sample 4 Sample 5 Sample 6
## 17.52 15.75 15.83 17.61 18.17 16.97
## Sample 7 Sample 8 Sample 9 Sample 10 Sample 11 Sample 12
## 15.07 17.92 17.22 16.35 17.23 17.17
## Sample 13 Sample 14 Sample 15 Sample 16 Sample 17 Sample 18
## 16.77 17.44 17.01 17.64 16.81 13.45
## Sample 19 Sample 20 Sample 21 Sample 22 Sample 23 Sample 24
## 15.55 17.80 14.96 17.18 15.57 17.10
## Sample 25 Sample 26 Sample 27 Sample 28 Sample 29 Sample 30
## 16.13 17.74 16.54 14.62 18.21 14.30
## Sample 31 Sample 32 Sample 33 Sample 34 Sample 35 Sample 36
## 16.69 17.13 15.75 15.12 15.56 15.76
## Sample 37 Sample 38 Sample 39 Sample 40 Sample 41 Sample 42
## 16.63 16.41 16.37 14.78 17.52 15.17
## Sample 43 Sample sum
## 16.43 706.97
##
## Column clusters / Factors:
## BC 1 BC 2
## Min. :-1.5579 Min. :-3.2703
## 1st Qu.:-1.0974 1st Qu.:-1.0535
## Median : 0.1477 Median :-0.5024
## Mean :-0.0818 Mean :-0.5302
## 3rd Qu.: 0.5270 3rd Qu.: 0.0871
## Max. : 1.7549 Max. : 0.8557
##
##
## Row clusters / Loadings:
## BC 1 BC 2
## Min. :-0.7001 Min. :-0.4925
## 1st Qu.:-0.1375 1st Qu.:-0.0990
## Median :-0.0402 Median :-0.0300
## Mean :-0.0181 Mean :-0.0079
## 3rd Qu.: 0.0682 3rd Qu.: 0.0418
## Max. : 0.6667 Max. : 0.5449plot(fabia_2)
extractPlot(fabia_2)
3 Biclusters
set.seed(42)
fabia_3 = fabia(data.fabia, p = 3)## Running FABIA on a 701x43 matrix with## Number of biclusters ---------------- p: 3## Sparseness factor --------------- alpha: 0.01## Number of iterations -------------- cyc: 500## Loading prior parameter ----------- spl: 0## Factor prior parameter ------------ spz: 0.5## Initialization loadings--------- random: 1 = interval## Nonnegative Loadings and Factors ------: 0 = No## Centering ---------------------- center: 2 = median## Quantile scaling (0.75-0.25): ---- norm: 1 = Yes## Scaling loadings per iteration -- scale: 0 = No## Constraint variational parameter -- lap: 1## Max. number of biclusters per row -- nL: 0 = no limit## Max. number of row elements / biclu. lL: 0 = no limit## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500fabia_3
summary(fabia_3)##
## An object of class Factorization
##
## call:
## "fabia"
##
## Number of rows: 701
##
## Number of columns: 43
##
## Number of clusters: 3
##
## Information content of the clusters:
## BC 1 BC 2 BC 3 BC sum
## 383.32 355.74 349.95 910.88
##
##
##
## Information content of the samples:
## Sample 1 Sample 2 Sample 3 Sample 4 Sample 5 Sample 6
## 20.66 22.29 23.56 20.14 21.15 20.75
## Sample 7 Sample 8 Sample 9 Sample 10 Sample 11 Sample 12
## 23.47 20.61 19.82 19.66 19.84 21.50
## Sample 13 Sample 14 Sample 15 Sample 16 Sample 17 Sample 18
## 19.18 22.81 19.44 22.90 19.21 18.15
## Sample 19 Sample 20 Sample 21 Sample 22 Sample 23 Sample 24
## 19.52 22.05 19.56 20.74 21.06 20.72
## Sample 25 Sample 26 Sample 27 Sample 28 Sample 29 Sample 30
## 22.57 21.38 22.83 23.92 20.76 20.40
## Sample 31 Sample 32 Sample 33 Sample 34 Sample 35 Sample 36
## 19.96 19.95 19.90 23.24 22.56 21.93
## Sample 37 Sample 38 Sample 39 Sample 40 Sample 41 Sample 42
## 22.32 20.58 19.80 20.36 23.37 24.24
## Sample 43 Sample sum
## 22.05 910.88
##
## Column clusters / Factors:
## BC 1 BC 2 BC 3
## Min. :-2.1935 Min. :-2.946 Min. :-2.047
## 1st Qu.:-0.9310 1st Qu.:-0.701 1st Qu.:-0.636
## Median :-0.1501 Median :-0.176 Median :-0.254
## Mean :-0.0685 Mean :-0.156 Mean :-0.122
## 3rd Qu.: 0.7218 3rd Qu.: 0.631 3rd Qu.: 0.524
## Max. : 1.6073 Max. : 1.870 Max. : 3.074
##
##
## Row clusters / Loadings:
## BC 1 BC 2 BC 3
## Min. :-0.9916 Min. :-0.97246 Min. :-0.9422
## 1st Qu.:-0.1897 1st Qu.:-0.18141 1st Qu.:-0.2238
## Median :-0.0499 Median :-0.03762 Median :-0.0802
## Mean :-0.0241 Mean :-0.00709 Mean :-0.0243
## 3rd Qu.: 0.0994 3rd Qu.: 0.13417 3rd Qu.: 0.0458
## Max. : 0.8738 Max. : 1.34875 Max. : 1.3504plot(fabia_3)
extractPlot(fabia_3)
5 Biclusters
set.seed(42)
fabia_5 = fabia(data.fabia, p = 5)## Running FABIA on a 701x43 matrix with## Number of biclusters ---------------- p: 5## Sparseness factor --------------- alpha: 0.01## Number of iterations -------------- cyc: 500## Loading prior parameter ----------- spl: 0## Factor prior parameter ------------ spz: 0.5## Initialization loadings--------- random: 1 = interval## Nonnegative Loadings and Factors ------: 0 = No## Centering ---------------------- center: 2 = median## Quantile scaling (0.75-0.25): ---- norm: 1 = Yes## Scaling loadings per iteration -- scale: 0 = No## Constraint variational parameter -- lap: 1## Max. number of biclusters per row -- nL: 0 = no limit## Max. number of row elements / biclu. lL: 0 = no limit## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500fabia_5
summary(fabia_5)##
## An object of class Factorization
##
## call:
## "fabia"
##
## Number of rows: 701
##
## Number of columns: 43
##
## Number of clusters: 5
##
## Information content of the clusters:
## BC 1 BC 2 BC 3 BC 4 BC 5 BC sum
## 386.61 383.15 369.13 324.83 285.97 1243.48
##
##
##
## Information content of the samples:
## Sample 1 Sample 2 Sample 3 Sample 4 Sample 5 Sample 6
## 30.30 27.71 31.66 26.17 29.04 29.42
## Sample 7 Sample 8 Sample 9 Sample 10 Sample 11 Sample 12
## 28.95 27.91 29.01 28.31 29.28 29.70
## Sample 13 Sample 14 Sample 15 Sample 16 Sample 17 Sample 18
## 28.96 30.16 28.06 31.11 27.41 28.01
## Sample 19 Sample 20 Sample 21 Sample 22 Sample 23 Sample 24
## 29.52 29.20 31.10 26.67 29.71 29.36
## Sample 25 Sample 26 Sample 27 Sample 28 Sample 29 Sample 30
## 28.60 29.33 30.38 32.46 28.30 27.87
## Sample 31 Sample 32 Sample 33 Sample 34 Sample 35 Sample 36
## 25.13 28.50 26.53 31.77 29.99 26.11
## Sample 37 Sample 38 Sample 39 Sample 40 Sample 41 Sample 42
## 26.95 28.18 27.80 30.27 28.86 32.14
## Sample 43 Sample sum
## 27.57 1243.48
##
## Column clusters / Factors:
## BC 1 BC 2 BC 3 BC 4
## Min. :-2.6050 Min. :-2.485 Min. :-1.451 Min. :-2.627
## 1st Qu.:-0.5765 1st Qu.:-0.711 1st Qu.:-0.168 1st Qu.:-0.869
## Median :-0.2037 Median :-0.151 Median : 0.150 Median :-0.288
## Mean :-0.0116 Mean :-0.166 Mean : 0.298 Mean :-0.276
## 3rd Qu.: 0.7439 3rd Qu.: 0.709 3rd Qu.: 0.485 3rd Qu.: 0.187
## Max. : 2.2634 Max. : 1.555 Max. : 4.147 Max. : 1.747
## BC 5
## Min. :-2.5916
## 1st Qu.:-1.1828
## Median :-0.2846
## Mean :-0.5572
## 3rd Qu.:-0.0182
## Max. : 1.0418
##
##
## Row clusters / Loadings:
## BC 1 BC 2 BC 3 BC 4
## Min. :-1.2716 Min. :-1.661929 Min. :-1.5803 Min. :-0.95650
## 1st Qu.:-0.3168 1st Qu.:-0.138801 1st Qu.:-0.2926 1st Qu.:-0.17688
## Median :-0.1175 Median : 0.007052 Median :-0.1055 Median :-0.04532
## Mean :-0.0438 Mean :-0.000272 Mean :-0.0446 Mean :-0.00825
## 3rd Qu.: 0.1067 3rd Qu.: 0.178763 3rd Qu.: 0.1274 3rd Qu.: 0.11346
## Max. : 1.7742 Max. : 0.978905 Max. : 1.4812 Max. : 1.00513
## BC 5
## Min. :-1.12270
## 1st Qu.:-0.14166
## Median :-0.03179
## Mean :-0.00744
## 3rd Qu.: 0.08676
## Max. : 1.05339plot(fabia_5)
extractPlot(fabia_5)
10 Biclusters
set.seed(42)
fabia_10 = fabia(data.fabia, p = 10)## Running FABIA on a 701x43 matrix with## Number of biclusters ---------------- p: 10## Sparseness factor --------------- alpha: 0.01## Number of iterations -------------- cyc: 500## Loading prior parameter ----------- spl: 0## Factor prior parameter ------------ spz: 0.5## Initialization loadings--------- random: 1 = interval## Nonnegative Loadings and Factors ------: 0 = No## Centering ---------------------- center: 2 = median## Quantile scaling (0.75-0.25): ---- norm: 1 = Yes## Scaling loadings per iteration -- scale: 0 = No## Constraint variational parameter -- lap: 1## Max. number of biclusters per row -- nL: 0 = no limit## Max. number of row elements / biclu. lL: 0 = no limit## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500fabia_10
summary(fabia_10)##
## An object of class Factorization
##
## call:
## "fabia"
##
## Number of rows: 701
##
## Number of columns: 43
##
## Number of clusters: 10
##
## Information content of the clusters:
## BC 1 BC 2 BC 3 BC 4 BC 5 BC 6 BC 7 BC 8
## 387.93 383.07 364.12 351.02 340.48 310.16 309.42 263.07
## BC 9 BC 10 BC sum
## 257.00 247.76 2042.63
##
##
##
## Information content of the samples:
## Sample 1 Sample 2 Sample 3 Sample 4 Sample 5 Sample 6
## 47.34 43.38 48.73 44.55 50.76 48.07
## Sample 7 Sample 8 Sample 9 Sample 10 Sample 11 Sample 12
## 49.56 45.86 44.54 42.41 46.19 54.70
## Sample 13 Sample 14 Sample 15 Sample 16 Sample 17 Sample 18
## 48.04 52.45 49.41 49.54 41.97 46.34
## Sample 19 Sample 20 Sample 21 Sample 22 Sample 23 Sample 24
## 48.22 48.17 54.25 47.59 49.75 46.81
## Sample 25 Sample 26 Sample 27 Sample 28 Sample 29 Sample 30
## 45.25 46.12 51.35 47.55 50.54 45.16
## Sample 31 Sample 32 Sample 33 Sample 34 Sample 35 Sample 36
## 47.97 49.13 42.52 46.02 45.52 47.22
## Sample 37 Sample 38 Sample 39 Sample 40 Sample 41 Sample 42
## 43.37 51.80 48.67 47.73 47.21 48.04
## Sample 43 Sample sum
## 42.80 2042.63
##
## Column clusters / Factors:
## BC 1 BC 2 BC 3 BC 4
## Min. :-3.189 Min. :-3.0618 Min. :-1.503 Min. :-1.9327
## 1st Qu.:-0.910 1st Qu.:-0.5063 1st Qu.:-0.368 1st Qu.:-0.8016
## Median :-0.407 Median :-0.0828 Median : 0.103 Median :-0.0118
## Mean :-0.455 Mean :-0.2154 Mean : 0.114 Mean :-0.0884
## 3rd Qu.: 0.145 3rd Qu.: 0.3864 3rd Qu.: 0.422 3rd Qu.: 0.3088
## Max. : 1.369 Max. : 1.2881 Max. : 3.149 Max. : 3.2507
## BC 5 BC 6 BC 7 BC 8
## Min. :-2.114 Min. :-2.452 Min. :-1.92786 Min. :-1.5659
## 1st Qu.:-0.243 1st Qu.:-0.592 1st Qu.:-0.34454 1st Qu.:-0.0286
## Median : 0.177 Median :-0.136 Median : 0.00997 Median : 0.2566
## Mean : 0.202 Mean :-0.264 Mean : 0.10691 Mean : 0.4965
## 3rd Qu.: 0.836 3rd Qu.: 0.300 3rd Qu.: 0.48262 3rd Qu.: 0.8361
## Max. : 2.550 Max. : 1.439 Max. : 4.02123 Max. : 2.6820
## BC 9 BC 10
## Min. :-2.7478 Min. :-2.5045
## 1st Qu.:-1.0894 1st Qu.:-0.7765
## Median :-0.3281 Median :-0.1732
## Mean :-0.3767 Mean :-0.0917
## 3rd Qu.: 0.0951 3rd Qu.: 0.6819
## Max. : 2.4931 Max. : 2.2691
##
##
## Row clusters / Loadings:
## BC 1 BC 2 BC 3 BC 4
## Min. :-1.5283 Min. :-1.5274 Min. :-1.59487 Min. :-1.0324
## 1st Qu.:-0.3225 1st Qu.:-0.2027 1st Qu.:-0.16832 1st Qu.:-0.2720
## Median :-0.1135 Median : 0.0547 Median : 0.04653 Median :-0.1071
## Mean :-0.0415 Mean : 0.0365 Mean : 0.00894 Mean :-0.0359
## 3rd Qu.: 0.1333 3rd Qu.: 0.2764 3rd Qu.: 0.22180 3rd Qu.: 0.0845
## Max. : 1.8945 Max. : 1.9970 Max. : 1.51057 Max. : 1.6811
## BC 5 BC 6 BC 7 BC 8
## Min. :-0.9547 Min. :-0.9944 Min. :-0.9384 Min. :-0.8211
## 1st Qu.:-0.2376 1st Qu.:-0.1689 1st Qu.:-0.1872 1st Qu.:-0.1738
## Median :-0.1030 Median :-0.0246 Median :-0.0831 Median :-0.0284
## Mean :-0.0362 Mean :-0.0141 Mean :-0.0263 Mean :-0.0236
## 3rd Qu.: 0.0457 3rd Qu.: 0.1163 3rd Qu.: 0.0569 3rd Qu.: 0.1310
## Max. : 1.3345 Max. : 0.8192 Max. : 1.1191 Max. : 0.9751
## BC 9 BC 10
## Min. :-0.5737 Min. :-0.863367
## 1st Qu.:-0.0578 1st Qu.:-0.092216
## Median : 0.0428 Median :-0.003182
## Mean : 0.0211 Mean :-0.000252
## 3rd Qu.: 0.1373 3rd Qu.: 0.079922
## Max. : 0.5933 Max. : 0.432566plot(fabia_10)
extractPlot(fabia_10)
15 Biclusters
set.seed(42)
fabia_15 = fabia(data.fabia, p = 15)## Running FABIA on a 701x43 matrix with## Number of biclusters ---------------- p: 15## Sparseness factor --------------- alpha: 0.01## Number of iterations -------------- cyc: 500## Loading prior parameter ----------- spl: 0## Factor prior parameter ------------ spz: 0.5## Initialization loadings--------- random: 1 = interval## Nonnegative Loadings and Factors ------: 0 = No## Centering ---------------------- center: 2 = median## Quantile scaling (0.75-0.25): ---- norm: 1 = Yes## Scaling loadings per iteration -- scale: 0 = No## Constraint variational parameter -- lap: 1## Max. number of biclusters per row -- nL: 0 = no limit## Max. number of row elements / biclu. lL: 0 = no limit## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500fabia_15
summary(fabia_15)##
## An object of class Factorization
##
## call:
## "fabia"
##
## Number of rows: 701
##
## Number of columns: 43
##
## Number of clusters: 15
##
## Information content of the clusters:
## BC 1 BC 2 BC 3 BC 4 BC 5 BC 6 BC 7 BC 8
## 394.79 378.69 365.11 355.21 355.13 346.24 342.25 335.84
## BC 9 BC 10 BC 11 BC 12 BC 13 BC 14 BC 15 BC sum
## 335.46 300.60 299.46 281.38 277.16 225.65 222.22 3139.91
##
##
##
## Information content of the samples:
## Sample 1 Sample 2 Sample 3 Sample 4 Sample 5 Sample 6
## 70.93 77.43 73.34 69.54 76.60 75.13
## Sample 7 Sample 8 Sample 9 Sample 10 Sample 11 Sample 12
## 79.57 72.95 69.27 69.60 65.57 73.25
## Sample 13 Sample 14 Sample 15 Sample 16 Sample 17 Sample 18
## 65.79 80.62 69.81 72.87 71.03 74.64
## Sample 19 Sample 20 Sample 21 Sample 22 Sample 23 Sample 24
## 77.04 73.72 76.00 75.00 75.60 71.73
## Sample 25 Sample 26 Sample 27 Sample 28 Sample 29 Sample 30
## 72.49 73.37 77.11 76.51 75.70 73.09
## Sample 31 Sample 32 Sample 33 Sample 34 Sample 35 Sample 36
## 72.98 68.34 66.58 76.67 72.04 76.34
## Sample 37 Sample 38 Sample 39 Sample 40 Sample 41 Sample 42
## 69.88 68.95 74.14 74.97 73.63 71.31
## Sample 43 Sample sum
## 68.78 3139.91
##
## Column clusters / Factors:
## BC 1 BC 2 BC 3 BC 4
## Min. :-1.916 Min. :-2.3269 Min. :-3.4879 Min. :-2.3742
## 1st Qu.:-0.888 1st Qu.:-1.0460 1st Qu.:-0.1452 1st Qu.:-0.6905
## Median :-0.365 Median :-0.0417 Median : 0.0844 Median :-0.0641
## Mean :-0.332 Mean :-0.3256 Mean : 0.0692 Mean :-0.1691
## 3rd Qu.: 0.011 3rd Qu.: 0.1339 3rd Qu.: 0.5450 3rd Qu.: 0.2589
## Max. : 2.077 Max. : 1.4538 Max. : 2.3393 Max. : 3.0357
## BC 5 BC 6 BC 7 BC 8
## Min. :-2.8706 Min. :-2.5788 Min. :-2.468 Min. :-2.42551
## 1st Qu.:-0.4200 1st Qu.:-0.3792 1st Qu.:-1.013 1st Qu.:-0.45882
## Median :-0.0654 Median : 0.0438 Median :-0.294 Median :-0.00706
## Mean :-0.0482 Mean : 0.1658 Mean :-0.385 Mean :-0.20368
## 3rd Qu.: 0.2973 3rd Qu.: 0.9066 3rd Qu.: 0.195 3rd Qu.: 0.15986
## Max. : 1.9429 Max. : 2.5065 Max. : 1.647 Max. : 1.97105
## BC 9 BC 10 BC 11 BC 12
## Min. :-2.7341 Min. :-2.35252 Min. :-2.835 Min. :-2.1565
## 1st Qu.:-0.9727 1st Qu.:-0.49034 1st Qu.:-0.703 1st Qu.:-0.2094
## Median :-0.0806 Median :-0.00388 Median :-0.174 Median : 0.0605
## Mean :-0.3146 Mean :-0.12009 Mean :-0.298 Mean : 0.1359
## 3rd Qu.: 0.2063 3rd Qu.: 0.15354 3rd Qu.: 0.152 3rd Qu.: 0.5227
## Max. : 1.3940 Max. : 3.20356 Max. : 1.834 Max. : 3.8248
## BC 13 BC 14 BC 15
## Min. :-1.91560 Min. :-2.867 Min. :-1.70156
## 1st Qu.:-0.98316 1st Qu.:-0.055 1st Qu.:-0.65302
## Median :-0.28577 Median : 0.122 Median :-0.05963
## Mean :-0.33503 Mean : 0.277 Mean :-0.00221
## 3rd Qu.: 0.00351 3rd Qu.: 0.826 3rd Qu.: 0.29792
## Max. : 3.11242 Max. : 2.687 Max. : 2.37079
##
##
## Row clusters / Loadings:
## BC 1 BC 2 BC 3 BC 4
## Min. :-1.0504 Min. :-1.2470 Min. :-1.2199 Min. :-0.8809
## 1st Qu.:-0.1843 1st Qu.:-0.2587 1st Qu.:-0.2945 1st Qu.:-0.2370
## Median : 0.0612 Median :-0.0911 Median :-0.0913 Median :-0.0959
## Mean : 0.0341 Mean :-0.0265 Mean :-0.0396 Mean :-0.0275
## 3rd Qu.: 0.2526 3rd Qu.: 0.1328 3rd Qu.: 0.1228 3rd Qu.: 0.0873
## Max. : 1.7213 Max. : 1.4628 Max. : 1.5661 Max. : 1.5371
## BC 5 BC 6 BC 7 BC 8
## Min. :-1.0064 Min. :-0.7066 Min. :-0.94657 Min. :-1.3482
## 1st Qu.:-0.1883 1st Qu.:-0.1945 1st Qu.:-0.16629 1st Qu.:-0.1106
## Median :-0.0489 Median :-0.0875 Median :-0.03866 Median : 0.0560
## Mean :-0.0117 Mean :-0.0276 Mean :-0.00273 Mean : 0.0116
## 3rd Qu.: 0.1155 3rd Qu.: 0.0568 3rd Qu.: 0.13423 3rd Qu.: 0.1994
## Max. : 1.2309 Max. : 1.1570 Max. : 0.99173 Max. : 1.0462
## BC 9 BC 10 BC 11 BC 12
## Min. :-1.12991 Min. :-0.6064 Min. :-1.49844 Min. :-0.6899
## 1st Qu.:-0.15405 1st Qu.:-0.1356 1st Qu.:-0.11331 1st Qu.:-0.1142
## Median :-0.00203 Median :-0.0472 Median :-0.01029 Median :-0.0323
## Mean :-0.00824 Mean :-0.0118 Mean :-0.00569 Mean :-0.0108
## 3rd Qu.: 0.15859 3rd Qu.: 0.0835 3rd Qu.: 0.12788 3rd Qu.: 0.0590
## Max. : 0.81583 Max. : 2.0599 Max. : 0.60206 Max. : 0.6839
## BC 13 BC 14 BC 15
## Min. :-0.6255 Min. :-0.6732 Min. :-0.495193
## 1st Qu.:-0.0609 1st Qu.:-0.1214 1st Qu.:-0.071072
## Median : 0.0485 Median :-0.0097 Median : 0.000000
## Mean : 0.0208 Mean :-0.0164 Mean :-0.000174
## 3rd Qu.: 0.1361 3rd Qu.: 0.0862 3rd Qu.: 0.077791
## Max. : 0.5030 Max. : 0.6514 Max. : 0.499206plot(fabia_15)
extractPlot(fabia_15)
20 Biclusters
set.seed(42)
fabia_20 = fabia(data.fabia, p = 20)## Running FABIA on a 701x43 matrix with## Number of biclusters ---------------- p: 20## Sparseness factor --------------- alpha: 0.01## Number of iterations -------------- cyc: 500## Loading prior parameter ----------- spl: 0## Factor prior parameter ------------ spz: 0.5## Initialization loadings--------- random: 1 = interval## Nonnegative Loadings and Factors ------: 0 = No## Centering ---------------------- center: 2 = median## Quantile scaling (0.75-0.25): ---- norm: 1 = Yes## Scaling loadings per iteration -- scale: 0 = No## Constraint variational parameter -- lap: 1## Max. number of biclusters per row -- nL: 0 = no limit## Max. number of row elements / biclu. lL: 0 = no limit## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500fabia_20
summary(fabia_20)##
## An object of class Factorization
##
## call:
## "fabia"
##
## Number of rows: 701
##
## Number of columns: 43
##
## Number of clusters: 20
##
## Information content of the clusters:
## BC 1 BC 2 BC 3 BC 4 BC 5 BC 6 BC 7 BC 8
## 383.22 379.15 376.76 371.30 361.42 361.14 358.81 356.35
## BC 9 BC 10 BC 11 BC 12 BC 13 BC 14 BC 15 BC 16
## 343.14 343.06 338.18 328.26 323.16 313.68 306.50 295.98
## BC 17 BC 18 BC 19 BC 20 BC sum
## 295.59 289.68 263.29 245.32 4214.90
##
##
##
## Information content of the samples:
## Sample 1 Sample 2 Sample 3 Sample 4 Sample 5 Sample 6
## 101.35 94.82 101.39 97.12 94.90 96.98
## Sample 7 Sample 8 Sample 9 Sample 10 Sample 11 Sample 12
## 96.91 100.61 89.19 99.00 91.20 95.95
## Sample 13 Sample 14 Sample 15 Sample 16 Sample 17 Sample 18
## 96.39 101.58 95.29 105.09 91.65 94.59
## Sample 19 Sample 20 Sample 21 Sample 22 Sample 23 Sample 24
## 98.58 96.42 95.69 99.18 101.37 102.51
## Sample 25 Sample 26 Sample 27 Sample 28 Sample 29 Sample 30
## 102.05 109.81 97.25 99.56 93.70 98.84
## Sample 31 Sample 32 Sample 33 Sample 34 Sample 35 Sample 36
## 98.72 96.59 93.71 97.11 97.22 102.74
## Sample 37 Sample 38 Sample 39 Sample 40 Sample 41 Sample 42
## 96.19 95.62 103.35 101.38 99.38 98.55
## Sample 43 Sample sum
## 95.37 4214.90
##
## Column clusters / Factors:
## BC 1 BC 2 BC 3 BC 4
## Min. :-2.735 Min. :-2.360 Min. :-1.8212 Min. :-2.6192
## 1st Qu.:-0.766 1st Qu.:-0.589 1st Qu.:-0.4238 1st Qu.:-0.3871
## Median :-0.147 Median :-0.113 Median : 0.0303 Median : 0.0879
## Mean :-0.242 Mean :-0.192 Mean : 0.1725 Mean : 0.1293
## 3rd Qu.: 0.259 3rd Qu.: 0.109 3rd Qu.: 0.5678 3rd Qu.: 0.6960
## Max. : 2.421 Max. : 3.095 Max. : 2.3854 Max. : 2.3261
## BC 5 BC 6 BC 7 BC 8
## Min. :-3.017 Min. :-2.908 Min. :-1.9363 Min. :-2.86899
## 1st Qu.:-0.941 1st Qu.:-0.840 1st Qu.:-0.3637 1st Qu.:-0.59021
## Median :-0.245 Median :-0.266 Median : 0.0161 Median : 0.00519
## Mean :-0.335 Mean :-0.394 Mean :-0.0114 Mean :-0.24337
## 3rd Qu.: 0.179 3rd Qu.: 0.108 3rd Qu.: 0.4307 3rd Qu.: 0.25514
## Max. : 2.303 Max. : 1.384 Max. : 3.0959 Max. : 1.73389
## BC 9 BC 10 BC 11 BC 12
## Min. :-3.7400 Min. :-2.2912 Min. :-3.0778 Min. :-2.7369
## 1st Qu.:-0.3450 1st Qu.:-0.7776 1st Qu.:-0.7417 1st Qu.:-0.5369
## Median : 0.0725 Median :-0.0372 Median :-0.0544 Median :-0.0691
## Mean : 0.0436 Mean :-0.1983 Mean :-0.1040 Mean :-0.1611
## 3rd Qu.: 0.2766 3rd Qu.: 0.1494 3rd Qu.: 0.4079 3rd Qu.: 0.2381
## Max. : 4.1706 Max. : 2.3484 Max. : 2.4287 Max. : 1.8789
## BC 13 BC 14 BC 15 BC 16
## Min. :-2.3064 Min. :-2.502186 Min. :-3.762 Min. :-2.5878
## 1st Qu.:-0.5351 1st Qu.:-0.580816 1st Qu.:-0.350 1st Qu.:-0.9786
## Median :-0.0304 Median :-0.000861 Median :-0.117 Median :-0.1390
## Mean : 0.0691 Mean :-0.126482 Mean :-0.175 Mean :-0.3331
## 3rd Qu.: 0.5295 3rd Qu.: 0.219293 3rd Qu.: 0.131 3rd Qu.: 0.0674
## Max. : 2.1168 Max. : 2.870941 Max. : 2.484 Max. : 2.2934
## BC 17 BC 18 BC 19 BC 20
## Min. :-1.7606 Min. :-2.988 Min. :-2.84955 Min. :-2.5495
## 1st Qu.:-0.0398 1st Qu.:-0.508 1st Qu.:-0.15201 1st Qu.:-0.4839
## Median : 0.1623 Median :-0.129 Median :-0.02939 Median : 0.0482
## Mean : 0.2915 Mean :-0.104 Mean : 0.00188 Mean :-0.0906
## 3rd Qu.: 1.0132 3rd Qu.: 0.139 3rd Qu.: 0.31120 3rd Qu.: 0.4134
## Max. : 2.3359 Max. : 3.111 Max. : 3.00332 Max. : 1.7589
##
##
## Row clusters / Loadings:
## BC 1 BC 2 BC 3 BC 4
## Min. :-1.1125 Min. :-1.4967 Min. :-1.5766 Min. :-0.8407
## 1st Qu.:-0.2031 1st Qu.:-0.2475 1st Qu.:-0.0979 1st Qu.:-0.2307
## Median : 0.0348 Median :-0.0878 Median : 0.0877 Median :-0.1013
## Mean : 0.0274 Mean :-0.0223 Mean : 0.0293 Mean :-0.0338
## 3rd Qu.: 0.2380 3rd Qu.: 0.1362 3rd Qu.: 0.2304 3rd Qu.: 0.0522
## Max. : 1.3826 Max. : 1.5166 Max. : 1.3754 Max. : 1.3404
## BC 5 BC 6 BC 7 BC 8
## Min. :-0.7402 Min. :-0.8261 Min. :-1.59220 Min. :-1.2644
## 1st Qu.:-0.2034 1st Qu.:-0.0846 1st Qu.:-0.15237 1st Qu.:-0.2218
## Median :-0.0679 Median : 0.0590 Median : 0.00377 Median :-0.0284
## Mean :-0.0206 Mean : 0.0284 Mean :-0.00555 Mean :-0.0183
## 3rd Qu.: 0.0787 3rd Qu.: 0.1709 3rd Qu.: 0.19000 3rd Qu.: 0.1599
## Max. : 1.3172 Max. : 0.8948 Max. : 0.85990 Max. : 1.0933
## BC 9 BC 10 BC 11 BC 12
## Min. :-1.1861 Min. :-1.11873 Min. :-1.0970 Min. :-0.84214
## 1st Qu.:-0.2131 1st Qu.:-0.13072 1st Qu.:-0.1802 1st Qu.:-0.15000
## Median :-0.0563 Median : 0.03644 Median :-0.0404 Median :-0.01345
## Mean :-0.0287 Mean : 0.00687 Mean :-0.0128 Mean :-0.00089
## 3rd Qu.: 0.1095 3rd Qu.: 0.17869 3rd Qu.: 0.1435 3rd Qu.: 0.13763
## Max. : 1.0816 Max. : 1.01800 Max. : 1.1817 Max. : 1.10283
## BC 13 BC 14 BC 15 BC 16
## Min. :-0.80528 Min. :-0.81134 Min. :-1.2366 Min. :-0.9179
## 1st Qu.:-0.15334 1st Qu.:-0.11257 1st Qu.:-0.0787 1st Qu.:-0.0856
## Median :-0.02930 Median :-0.00903 Median : 0.0202 Median : 0.0460
## Mean :-0.00888 Mean :-0.00226 Mean : 0.0113 Mean : 0.0183
## 3rd Qu.: 0.10401 3rd Qu.: 0.09703 3rd Qu.: 0.1297 3rd Qu.: 0.1417
## Max. : 0.88029 Max. : 1.02844 Max. : 0.8138 Max. : 0.6509
## BC 17 BC 18 BC 19 BC 20
## Min. :-8.23e-01 Min. :-0.7875 Min. :-0.66656 Min. :-0.645238
## 1st Qu.:-1.39e-01 1st Qu.:-0.1150 1st Qu.:-0.09713 1st Qu.:-0.085742
## Median : 6.18e-05 Median :-0.0305 Median :-0.01266 Median :-0.007335
## Mean :-1.18e-02 Mean :-0.0108 Mean :-0.00606 Mean : 0.000582
## 3rd Qu.: 1.14e-01 3rd Qu.: 0.0760 3rd Qu.: 0.08195 3rd Qu.: 0.074128
## Max. : 7.66e-01 Max. : 0.5840 Max. : 0.91804 Max. : 0.489787plot(fabia_20)
extractPlot(fabia_20)
35 Biclusters
set.seed(42)
fabia_35 = fabia(data.fabia, p = 35)## Running FABIA on a 701x43 matrix with## Number of biclusters ---------------- p: 35## Sparseness factor --------------- alpha: 0.01## Number of iterations -------------- cyc: 500## Loading prior parameter ----------- spl: 0## Factor prior parameter ------------ spz: 0.5## Initialization loadings--------- random: 1 = interval## Nonnegative Loadings and Factors ------: 0 = No## Centering ---------------------- center: 2 = median## Quantile scaling (0.75-0.25): ---- norm: 1 = Yes## Scaling loadings per iteration -- scale: 0 = No## Constraint variational parameter -- lap: 1## Max. number of biclusters per row -- nL: 0 = no limit## Max. number of row elements / biclu. lL: 0 = no limit## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500fabia_35
summary(fabia_35)##
## An object of class Factorization
##
## call:
## "fabia"
##
## Number of rows: 701
##
## Number of columns: 43
##
## Number of clusters: 35
##
## Information content of the clusters:
## BC 1 BC 2 BC 3 BC 4 BC 5 BC 6 BC 7 BC 8
## 402.87 399.51 390.43 387.69 383.62 380.55 379.16 378.08
## BC 9 BC 10 BC 11 BC 12 BC 13 BC 14 BC 15 BC 16
## 374.36 373.71 371.89 369.53 368.66 368.07 365.28 359.47
## BC 17 BC 18 BC 19 BC 20 BC 21 BC 22 BC 23 BC 24
## 357.92 357.49 357.23 356.57 353.10 348.67 345.72 343.25
## BC 25 BC 26 BC 27 BC 28 BC 29 BC 30 BC 31 BC 32
## 342.65 342.51 338.98 337.19 337.18 335.90 333.18 332.98
## BC 33 BC 34 BC 35 BC sum
## 329.41 328.28 324.24 10178.08
##
##
##
## Information content of the samples:
## Sample 1 Sample 2 Sample 3 Sample 4 Sample 5 Sample 6
## 240.33 240.02 235.92 242.36 230.25 228.96
## Sample 7 Sample 8 Sample 9 Sample 10 Sample 11 Sample 12
## 230.38 242.22 228.97 241.84 253.50 248.88
## Sample 13 Sample 14 Sample 15 Sample 16 Sample 17 Sample 18
## 229.10 231.95 246.27 226.49 232.66 245.04
## Sample 19 Sample 20 Sample 21 Sample 22 Sample 23 Sample 24
## 238.40 239.30 231.07 230.04 230.33 238.32
## Sample 25 Sample 26 Sample 27 Sample 28 Sample 29 Sample 30
## 231.66 230.27 236.81 234.33 228.58 250.84
## Sample 31 Sample 32 Sample 33 Sample 34 Sample 35 Sample 36
## 234.66 237.06 245.20 239.87 240.64 244.31
## Sample 37 Sample 38 Sample 39 Sample 40 Sample 41 Sample 42
## 225.51 228.00 235.23 237.40 235.10 227.48
## Sample 43 Sample sum
## 252.52 10178.08
##
## Column clusters / Factors:
## BC 1 BC 2 BC 3 BC 4
## Min. :-2.4332 Min. :-2.5237 Min. :-2.7578 Min. :-2.33342
## 1st Qu.:-0.9543 1st Qu.:-0.3692 1st Qu.:-0.7920 1st Qu.:-0.46409
## Median :-0.0632 Median : 0.0257 Median :-0.0145 Median : 0.00304
## Mean :-0.2225 Mean : 0.0573 Mean :-0.0468 Mean : 0.01578
## 3rd Qu.: 0.2009 3rd Qu.: 0.8376 3rd Qu.: 0.6356 3rd Qu.: 0.54876
## Max. : 1.9633 Max. : 1.9398 Max. : 2.0777 Max. : 2.34560
## BC 5 BC 6 BC 7 BC 8
## Min. :-3.28233 Min. :-3.3592 Min. :-2.301 Min. :-3.1929
## 1st Qu.:-0.57805 1st Qu.:-0.6895 1st Qu.:-0.324 1st Qu.:-0.3036
## Median : 0.00621 Median :-0.0311 Median : 0.170 Median :-0.0327
## Mean :-0.11077 Mean :-0.0734 Mean : 0.173 Mean : 0.0783
## 3rd Qu.: 0.27463 3rd Qu.: 0.6098 3rd Qu.: 0.757 3rd Qu.: 0.3341
## Max. : 2.12664 Max. : 1.7889 Max. : 2.288 Max. : 2.8087
## BC 9 BC 10 BC 11 BC 12
## Min. :-3.0208 Min. :-1.3810 Min. :-1.77855 Min. :-2.71520
## 1st Qu.:-0.3729 1st Qu.:-0.6103 1st Qu.:-0.73422 1st Qu.:-0.40927
## Median :-0.0138 Median :-0.0366 Median : 0.00656 Median : 0.00491
## Mean : 0.0321 Mean : 0.1123 Mean :-0.03841 Mean :-0.05825
## 3rd Qu.: 0.2360 3rd Qu.: 0.6631 3rd Qu.: 0.59140 3rd Qu.: 0.59754
## Max. : 3.1153 Max. : 2.4636 Max. : 2.01627 Max. : 2.65525
## BC 13 BC 14 BC 15 BC 16
## Min. :-2.6589 Min. :-3.0597 Min. :-2.183 Min. :-2.528
## 1st Qu.:-0.8846 1st Qu.:-0.6829 1st Qu.:-0.502 1st Qu.:-0.550
## Median : 0.0443 Median : 0.0324 Median : 0.115 Median :-0.148
## Mean :-0.1016 Mean :-0.0234 Mean : 0.162 Mean :-0.114
## 3rd Qu.: 0.4241 3rd Qu.: 0.6210 3rd Qu.: 0.964 3rd Qu.: 0.410
## Max. : 2.2146 Max. : 2.1064 Max. : 2.610 Max. : 2.632
## BC 17 BC 18 BC 19 BC 20
## Min. :-3.7358 Min. :-1.8266 Min. :-1.7134 Min. :-2.3496
## 1st Qu.:-0.3846 1st Qu.:-0.6048 1st Qu.:-0.5988 1st Qu.:-0.5490
## Median :-0.0377 Median :-0.0598 Median :-0.0594 Median :-0.0543
## Mean : 0.0210 Mean :-0.0151 Mean : 0.0209 Mean :-0.1585
## 3rd Qu.: 0.4551 3rd Qu.: 0.3256 3rd Qu.: 0.2653 3rd Qu.: 0.1352
## Max. : 2.3899 Max. : 3.2428 Max. : 3.3765 Max. : 3.6546
## BC 21 BC 22 BC 23 BC 24
## Min. :-2.61655 Min. :-2.3803 Min. :-2.13532 Min. :-1.3124
## 1st Qu.:-0.41404 1st Qu.:-0.5368 1st Qu.:-0.47921 1st Qu.:-0.4981
## Median :-0.00814 Median : 0.0540 Median : 0.00733 Median : 0.0578
## Mean :-0.11142 Mean :-0.0343 Mean :-0.01423 Mean : 0.2212
## 3rd Qu.: 0.43396 3rd Qu.: 0.4495 3rd Qu.: 0.27372 3rd Qu.: 0.8392
## Max. : 2.38082 Max. : 2.2361 Max. : 2.42218 Max. : 2.3765
## BC 25 BC 26 BC 27 BC 28
## Min. :-2.0866 Min. :-2.40805 Min. :-1.891 Min. :-2.5307
## 1st Qu.:-0.7743 1st Qu.:-0.67259 1st Qu.:-0.217 1st Qu.:-0.5734
## Median :-0.0366 Median :-0.00518 Median : 0.052 Median :-0.0167
## Mean :-0.1663 Mean :-0.04131 Mean : 0.212 Mean :-0.0572
## 3rd Qu.: 0.1828 3rd Qu.: 0.35111 3rd Qu.: 0.860 3rd Qu.: 0.4522
## Max. : 1.8651 Max. : 1.89511 Max. : 2.637 Max. : 3.1212
## BC 29 BC 30 BC 31 BC 32
## Min. :-1.9588 Min. :-2.5852 Min. :-1.9891 Min. :-2.096
## 1st Qu.:-0.6729 1st Qu.:-0.6704 1st Qu.:-0.7299 1st Qu.:-0.369
## Median :-0.0181 Median : 0.0299 Median : 0.0234 Median : 0.168
## Mean : 0.0138 Mean :-0.0553 Mean :-0.0021 Mean : 0.144
## 3rd Qu.: 0.5815 3rd Qu.: 0.3985 3rd Qu.: 0.5422 3rd Qu.: 0.623
## Max. : 2.1788 Max. : 2.3404 Max. : 2.3423 Max. : 2.615
## BC 33 BC 34 BC 35
## Min. :-2.4848 Min. :-3.3818 Min. :-2.923
## 1st Qu.:-0.5155 1st Qu.:-0.1876 1st Qu.:-0.550
## Median : 0.0826 Median : 0.0224 Median : 0.204
## Mean : 0.0100 Mean : 0.0020 Mean : 0.157
## 3rd Qu.: 0.5712 3rd Qu.: 0.5051 3rd Qu.: 0.774
## Max. : 1.7356 Max. : 2.1831 Max. : 1.899
##
##
## Row clusters / Loadings:
## BC 1 BC 2 BC 3 BC 4
## Min. :-0.7738 Min. :-0.8174 Min. :-0.9534 Min. :-0.83825
## 1st Qu.:-0.1035 1st Qu.:-0.0849 1st Qu.:-0.0873 1st Qu.:-0.17564
## Median : 0.0304 Median : 0.0352 Median : 0.0322 Median :-0.00934
## Mean : 0.0302 Mean : 0.0133 Mean : 0.0166 Mean :-0.01364
## 3rd Qu.: 0.1671 3rd Qu.: 0.1289 3rd Qu.: 0.1313 3rd Qu.: 0.14935
## Max. : 0.8652 Max. : 0.9107 Max. : 0.7274 Max. : 0.88784
## BC 5 BC 6 BC 7 BC 8
## Min. :-0.76893 Min. :-0.5571 Min. :-1.0956 Min. :-0.8844
## 1st Qu.:-0.13889 1st Qu.:-0.1347 1st Qu.:-0.1361 1st Qu.:-0.0954
## Median :-0.02783 Median :-0.0383 Median :-0.0174 Median : 0.0193
## Mean :-0.00636 Mean :-0.0115 Mean :-0.0160 Mean : 0.0110
## 3rd Qu.: 0.11986 3rd Qu.: 0.0927 3rd Qu.: 0.1103 3rd Qu.: 0.1420
## Max. : 0.72122 Max. : 0.5539 Max. : 0.5437 Max. : 0.7218
## BC 9 BC 10 BC 11 BC 12
## Min. :-0.7089 Min. :-0.68638 Min. :-0.85304 Min. :-0.6227
## 1st Qu.:-0.1433 1st Qu.:-0.12627 1st Qu.:-0.13293 1st Qu.:-0.0616
## Median : 0.0210 Median : 0.01975 Median : 0.00965 Median : 0.0481
## Mean : 0.0141 Mean : 0.00545 Mean : 0.00324 Mean : 0.0181
## 3rd Qu.: 0.1483 3rd Qu.: 0.13470 3rd Qu.: 0.11950 3rd Qu.: 0.1207
## Max. : 0.8268 Max. : 0.93108 Max. : 0.57978 Max. : 0.6490
## BC 13 BC 14 BC 15 BC 16
## Min. :-0.60529 Min. :-0.67980 Min. :-0.49602 Min. :-0.799727
## 1st Qu.:-0.08219 1st Qu.:-0.09174 1st Qu.:-0.07977 1st Qu.:-0.090463
## Median : 0.02170 Median :-0.01399 Median : 0.01595 Median : 0.004833
## Mean : 0.00491 Mean :-0.00226 Mean : 0.00228 Mean : 0.000475
## 3rd Qu.: 0.11981 3rd Qu.: 0.10574 3rd Qu.: 0.10216 3rd Qu.: 0.098669
## Max. : 0.49492 Max. : 0.60239 Max. : 0.77706 Max. : 0.554259
## BC 17 BC 18 BC 19 BC 20
## Min. :-0.4833 Min. :-0.6731 Min. :-0.689336 Min. :-0.95088
## 1st Qu.:-0.1214 1st Qu.:-0.0798 1st Qu.:-0.107650 1st Qu.:-0.12372
## Median :-0.0258 Median : 0.0354 Median :-0.003835 Median :-0.00869
## Mean :-0.0156 Mean : 0.0182 Mean :-0.000459 Mean :-0.00705
## 3rd Qu.: 0.0739 3rd Qu.: 0.1228 3rd Qu.: 0.107175 3rd Qu.: 0.11122
## Max. : 0.5319 Max. : 0.6953 Max. : 0.568009 Max. : 0.81198
## BC 21 BC 22 BC 23 BC 24
## Min. :-0.6724 Min. :-0.81824 Min. :-0.62220 Min. :-0.44676
## 1st Qu.:-0.1190 1st Qu.:-0.09955 1st Qu.:-0.07016 1st Qu.:-0.08265
## Median :-0.0299 Median : 0.00689 Median : 0.01878 Median : 0.00199
## Mean :-0.0114 Mean : 0.00324 Mean : 0.00983 Mean :-0.00282
## 3rd Qu.: 0.0795 3rd Qu.: 0.11853 3rd Qu.: 0.09465 3rd Qu.: 0.07892
## Max. : 0.4739 Max. : 1.05531 Max. : 0.62801 Max. : 0.64499
## BC 25 BC 26 BC 27 BC 28
## Min. :-0.58506 Min. :-0.60382 Min. :-0.52998 Min. :-0.8346
## 1st Qu.:-0.09131 1st Qu.:-0.05691 1st Qu.:-0.09384 1st Qu.:-0.0844
## Median : 0.00624 Median : 0.01282 Median :-0.01200 Median : 0.0066
## Mean : 0.01657 Mean : 0.00467 Mean :-0.00805 Mean : 0.0037
## 3rd Qu.: 0.11823 3rd Qu.: 0.08262 3rd Qu.: 0.08004 3rd Qu.: 0.0982
## Max. : 0.60794 Max. : 0.55202 Max. : 0.80631 Max. : 0.4744
## BC 29 BC 30 BC 31 BC 32
## Min. :-0.47967 Min. :-0.49435 Min. :-0.65282 Min. :-0.4813
## 1st Qu.:-0.07776 1st Qu.:-0.07544 1st Qu.:-0.07118 1st Qu.:-0.0992
## Median : 0.00573 Median : 0.00373 Median : 0.01285 Median :-0.0135
## Mean : 0.00101 Mean : 0.00637 Mean : 0.00542 Mean :-0.0127
## 3rd Qu.: 0.08685 3rd Qu.: 0.09114 3rd Qu.: 0.08379 3rd Qu.: 0.0707
## Max. : 0.57262 Max. : 0.45010 Max. : 0.70080 Max. : 0.7304
## BC 33 BC 34 BC 35
## Min. :-0.58776 Min. :-0.54571 Min. :-0.41026
## 1st Qu.:-0.07856 1st Qu.:-0.09141 1st Qu.:-0.07489
## Median :-0.00217 Median : 0.00291 Median :-0.00726
## Mean : 0.00330 Mean : 0.00331 Mean :-0.00151
## 3rd Qu.: 0.07558 3rd Qu.: 0.09400 3rd Qu.: 0.06900
## Max. : 0.56413 Max. : 0.60579 Max. : 0.52037plot(fabia_35)
extractPlot(fabia_35)
43 Biclusters (Maximum allowed)
set.seed(42)
fabia_43 = fabia(data.fabia, p = 43)## Running FABIA on a 701x43 matrix with## Number of biclusters ---------------- p: 43## Sparseness factor --------------- alpha: 0.01## Number of iterations -------------- cyc: 500## Loading prior parameter ----------- spl: 0## Factor prior parameter ------------ spz: 0.5## Initialization loadings--------- random: 1 = interval## Nonnegative Loadings and Factors ------: 0 = No## Centering ---------------------- center: 2 = median## Quantile scaling (0.75-0.25): ---- norm: 1 = Yes## Scaling loadings per iteration -- scale: 0 = No## Constraint variational parameter -- lap: 1## Max. number of biclusters per row -- nL: 0 = no limit## Max. number of row elements / biclu. lL: 0 = no limit## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500fabia_43
summary(fabia_43)##
## An object of class Factorization
##
## call:
## "fabia"
##
## Number of rows: 701
##
## Number of columns: 43
##
## Number of clusters: 43
##
## Information content of the clusters:
## BC 1 BC 2 BC 3 BC 4 BC 5 BC 6 BC 7 BC 8
## 472.43 458.38 449.98 447.51 445.81 445.17 442.67 442.45
## BC 9 BC 10 BC 11 BC 12 BC 13 BC 14 BC 15 BC 16
## 440.68 440.32 439.92 439.37 438.94 438.56 437.99 435.46
## BC 17 BC 18 BC 19 BC 20 BC 21 BC 22 BC 23 BC 24
## 434.74 434.62 434.42 434.35 432.74 432.71 432.53 432.03
## BC 25 BC 26 BC 27 BC 28 BC 29 BC 30 BC 31 BC 32
## 430.87 430.49 429.14 428.59 427.48 426.58 426.32 425.66
## BC 33 BC 34 BC 35 BC 36 BC 37 BC 38 BC 39 BC 40
## 425.47 424.27 422.22 420.31 418.88 417.76 417.27 416.73
## BC 41 BC 42 BC 43 BC sum
## 412.97 411.79 410.85 17726.71
##
##
##
## Information content of the samples:
## Sample 1 Sample 2 Sample 3 Sample 4 Sample 5 Sample 6
## 408.67 407.28 407.77 412.76 410.92 409.67
## Sample 7 Sample 8 Sample 9 Sample 10 Sample 11 Sample 12
## 412.87 415.16 414.00 409.84 409.49 414.32
## Sample 13 Sample 14 Sample 15 Sample 16 Sample 17 Sample 18
## 414.49 407.65 415.32 403.31 409.45 421.95
## Sample 19 Sample 20 Sample 21 Sample 22 Sample 23 Sample 24
## 412.10 412.29 412.55 425.12 413.61 409.45
## Sample 25 Sample 26 Sample 27 Sample 28 Sample 29 Sample 30
## 419.75 407.96 411.97 412.11 416.23 410.08
## Sample 31 Sample 32 Sample 33 Sample 34 Sample 35 Sample 36
## 413.64 409.49 413.94 414.85 409.09 416.44
## Sample 37 Sample 38 Sample 39 Sample 40 Sample 41 Sample 42
## 412.77 419.20 406.56 412.77 413.77 407.43
## Sample 43 Sample sum
## 408.66 17726.71
##
## Column clusters / Factors:
## BC 1 BC 2 BC 3 BC 4
## Min. :-1.6015 Min. :-2.595 Min. :-2.029 Min. :-2.170
## 1st Qu.:-0.7339 1st Qu.:-1.013 1st Qu.:-0.454 1st Qu.:-0.881
## Median : 0.0173 Median :-0.319 Median : 0.195 Median :-0.239
## Mean : 0.1418 Mean :-0.291 Mean : 0.202 Mean :-0.196
## 3rd Qu.: 0.8842 3rd Qu.: 0.568 3rd Qu.: 0.888 3rd Qu.: 0.436
## Max. : 2.2309 Max. : 1.480 Max. : 2.282 Max. : 1.807
## BC 5 BC 6 BC 7 BC 8
## Min. :-2.54556 Min. :-1.926 Min. :-1.6595 Min. :-2.838
## 1st Qu.:-0.66393 1st Qu.:-0.612 1st Qu.:-0.8440 1st Qu.:-0.729
## Median :-0.00947 Median : 0.242 Median :-0.3239 Median :-0.314
## Mean :-0.05322 Mean : 0.117 Mean :-0.0954 Mean :-0.242
## 3rd Qu.: 0.84185 3rd Qu.: 0.874 3rd Qu.: 0.8340 3rd Qu.: 0.342
## Max. : 1.87706 Max. : 2.823 Max. : 1.8158 Max. : 2.662
## BC 9 BC 10 BC 11 BC 12
## Min. :-2.196 Min. :-2.7106 Min. :-2.1816 Min. :-2.1777
## 1st Qu.:-0.507 1st Qu.:-0.9840 1st Qu.:-0.7676 1st Qu.:-0.5176
## Median : 0.374 Median : 0.0149 Median :-0.1319 Median : 0.0423
## Mean : 0.231 Mean :-0.0972 Mean :-0.0524 Mean : 0.1601
## 3rd Qu.: 0.837 3rd Qu.: 0.7444 3rd Qu.: 0.5015 3rd Qu.: 0.8021
## Max. : 1.917 Max. : 1.4473 Max. : 2.1857 Max. : 2.2124
## BC 13 BC 14 BC 15 BC 16
## Min. :-2.1934 Min. :-1.926 Min. :-2.14727 Min. :-2.510
## 1st Qu.:-0.2586 1st Qu.:-0.799 1st Qu.:-0.64532 1st Qu.:-0.691
## Median : 0.0372 Median :-0.102 Median : 0.28978 Median :-0.342
## Mean : 0.1796 Mean : 0.013 Mean : 0.00984 Mean :-0.213
## 3rd Qu.: 0.7311 3rd Qu.: 0.761 3rd Qu.: 0.66288 3rd Qu.: 0.541
## Max. : 2.7310 Max. : 1.737 Max. : 1.95586 Max. : 1.866
## BC 17 BC 18 BC 19 BC 20
## Min. :-2.117 Min. :-2.446 Min. :-2.9971 Min. :-2.120
## 1st Qu.:-0.666 1st Qu.:-0.631 1st Qu.:-0.5670 1st Qu.:-0.653
## Median :-0.160 Median :-0.145 Median :-0.0788 Median :-0.171
## Mean :-0.168 Mean :-0.146 Mean :-0.1825 Mean :-0.169
## 3rd Qu.: 0.412 3rd Qu.: 0.499 3rd Qu.: 0.3944 3rd Qu.: 0.408
## Max. : 1.946 Max. : 2.513 Max. : 1.4587 Max. : 2.391
## BC 21 BC 22 BC 23 BC 24
## Min. :-2.0739 Min. :-2.6253 Min. :-3.186 Min. :-1.4523
## 1st Qu.:-0.6618 1st Qu.:-0.7186 1st Qu.:-0.696 1st Qu.:-0.6497
## Median : 0.0312 Median :-0.0387 Median :-0.129 Median :-0.0324
## Mean : 0.0343 Mean :-0.1304 Mean :-0.149 Mean : 0.1216
## 3rd Qu.: 0.6416 3rd Qu.: 0.5945 3rd Qu.: 0.409 3rd Qu.: 0.7436
## Max. : 3.0818 Max. : 2.0102 Max. : 2.252 Max. : 2.5177
## BC 25 BC 26 BC 27 BC 28
## Min. :-2.271 Min. :-2.54691 Min. :-2.591 Min. :-1.748
## 1st Qu.:-0.462 1st Qu.:-0.68293 1st Qu.:-0.362 1st Qu.:-0.785
## Median : 0.097 Median : 0.02035 Median : 0.232 Median :-0.136
## Mean : 0.101 Mean :-0.00458 Mean : 0.179 Mean :-0.127
## 3rd Qu.: 0.794 3rd Qu.: 0.64112 3rd Qu.: 0.861 3rd Qu.: 0.226
## Max. : 1.944 Max. : 2.15439 Max. : 2.092 Max. : 3.726
## BC 29 BC 30 BC 31 BC 32
## Min. :-2.3069 Min. :-2.6445 Min. :-2.1011 Min. :-2.8107
## 1st Qu.:-0.7992 1st Qu.:-0.8924 1st Qu.:-0.5294 1st Qu.:-0.4781
## Median : 0.0790 Median :-0.0763 Median :-0.0369 Median :-0.0094
## Mean :-0.0256 Mean :-0.0979 Mean :-0.0381 Mean : 0.0825
## 3rd Qu.: 0.7644 3rd Qu.: 0.7137 3rd Qu.: 0.5417 3rd Qu.: 0.7130
## Max. : 1.7727 Max. : 1.6595 Max. : 2.9066 Max. : 2.5498
## BC 33 BC 34 BC 35 BC 36
## Min. :-1.857 Min. :-3.0063 Min. :-2.1260 Min. :-1.8860
## 1st Qu.:-0.485 1st Qu.:-0.3986 1st Qu.:-0.7310 1st Qu.:-0.5552
## Median : 0.132 Median : 0.0525 Median :-0.1530 Median : 0.0407
## Mean : 0.212 Mean :-0.0165 Mean :-0.0586 Mean : 0.0555
## 3rd Qu.: 0.725 3rd Qu.: 0.6710 3rd Qu.: 0.4819 3rd Qu.: 0.7017
## Max. : 3.197 Max. : 2.0282 Max. : 2.7057 Max. : 2.7109
## BC 37 BC 38 BC 39 BC 40
## Min. :-3.0255 Min. :-2.9208 Min. :-2.5604 Min. :-2.7057
## 1st Qu.:-0.3234 1st Qu.:-0.5739 1st Qu.:-0.9120 1st Qu.:-0.7262
## Median : 0.0102 Median :-0.0665 Median : 0.0505 Median : 0.1396
## Mean : 0.0473 Mean :-0.0994 Mean :-0.1076 Mean :-0.0459
## 3rd Qu.: 0.7891 3rd Qu.: 0.5995 3rd Qu.: 0.4200 3rd Qu.: 0.6363
## Max. : 2.0081 Max. : 1.6334 Max. : 2.6550 Max. : 1.9338
## BC 41 BC 42 BC 43
## Min. :-2.8348 Min. :-2.4230 Min. :-2.2582
## 1st Qu.:-0.5771 1st Qu.:-0.3345 1st Qu.:-0.3830
## Median :-0.0398 Median :-0.0382 Median :-0.0385
## Mean :-0.0296 Mean : 0.1638 Mean : 0.0141
## 3rd Qu.: 0.5908 3rd Qu.: 0.6354 3rd Qu.: 0.4220
## Max. : 2.1901 Max. : 2.5478 Max. : 3.4097
##
##
## Row clusters / Loadings:
## BC 1 BC 2 BC 3 BC 4
## Min. :-0.57874 Min. :-0.5491 Min. :-0.41277 Min. :-0.89219
## 1st Qu.:-0.08233 1st Qu.:-0.0570 1st Qu.:-0.05284 1st Qu.:-0.08461
## Median : 0.02141 Median : 0.0137 Median : 0.00714 Median :-0.00201
## Mean : 0.00692 Mean : 0.0158 Mean : 0.00485 Mean :-0.00144
## 3rd Qu.: 0.11103 3rd Qu.: 0.0849 3rd Qu.: 0.06082 3rd Qu.: 0.08393
## Max. : 0.73985 Max. : 0.4196 Max. : 0.65968 Max. : 0.52727
## BC 5 BC 6 BC 7 BC 8
## Min. :-0.60102 Min. :-0.40640 Min. :-0.45718 Min. :-0.59008
## 1st Qu.:-0.05461 1st Qu.:-0.06678 1st Qu.:-0.06024 1st Qu.:-0.05796
## Median : 0.02154 Median : 0.00421 Median : 0.00449 Median : 0.00698
## Mean : 0.00864 Mean : 0.00262 Mean : 0.00408 Mean : 0.00241
## 3rd Qu.: 0.07801 3rd Qu.: 0.06581 3rd Qu.: 0.06862 3rd Qu.: 0.06561
## Max. : 0.53390 Max. : 0.37051 Max. : 0.45769 Max. : 0.46290
## BC 9 BC 10 BC 11 BC 12
## Min. :-0.391190 Min. :-0.40812 Min. :-0.44405 Min. :-0.69878
## 1st Qu.:-0.059742 1st Qu.:-0.06239 1st Qu.:-0.07761 1st Qu.:-0.07322
## Median : 0.006454 Median : 0.00868 Median :-0.01163 Median :-0.00152
## Mean :-0.000185 Mean : 0.00718 Mean :-0.00474 Mean :-0.00784
## 3rd Qu.: 0.065422 3rd Qu.: 0.07419 3rd Qu.: 0.05864 3rd Qu.: 0.06793
## Max. : 0.532597 Max. : 0.40028 Max. : 0.42520 Max. : 0.42652
## BC 13 BC 14 BC 15 BC 16
## Min. :-0.44947 Min. :-0.36248 Min. :-0.4086 Min. :-0.43537
## 1st Qu.:-0.07024 1st Qu.:-0.06572 1st Qu.:-0.0510 1st Qu.:-0.05715
## Median : 0.00111 Median : 0.01357 Median : 0.0179 Median : 0.00353
## Mean : 0.00291 Mean : 0.00379 Mean : 0.0084 Mean : 0.00654
## 3rd Qu.: 0.07443 3rd Qu.: 0.07225 3rd Qu.: 0.0642 3rd Qu.: 0.06871
## Max. : 0.45466 Max. : 0.41529 Max. : 0.4007 Max. : 0.51561
## BC 17 BC 18 BC 19 BC 20
## Min. :-0.41406 Min. :-0.629613 Min. :-0.63729 Min. :-0.33772
## 1st Qu.:-0.05266 1st Qu.:-0.077332 1st Qu.:-0.07303 1st Qu.:-0.05481
## Median : 0.01263 Median :-0.000412 Median :-0.00240 Median : 0.00987
## Mean : 0.00213 Mean :-0.003064 Mean :-0.00108 Mean : 0.01268
## 3rd Qu.: 0.06803 3rd Qu.: 0.068399 3rd Qu.: 0.07442 3rd Qu.: 0.07807
## Max. : 0.39803 Max. : 0.520355 Max. : 0.44143 Max. : 0.40074
## BC 21 BC 22 BC 23 BC 24
## Min. :-0.3970 Min. :-0.487066 Min. :-0.41347 Min. :-0.3712
## 1st Qu.:-0.0585 1st Qu.:-0.066208 1st Qu.:-0.07631 1st Qu.:-0.0797
## Median : 0.0194 Median :-0.003322 Median :-0.00287 Median :-0.0130
## Mean : 0.0104 Mean : 0.000977 Mean :-0.00229 Mean :-0.0114
## 3rd Qu.: 0.0818 3rd Qu.: 0.066853 3rd Qu.: 0.06807 3rd Qu.: 0.0511
## Max. : 0.4354 Max. : 0.391323 Max. : 0.45194 Max. : 0.3312
## BC 25 BC 26 BC 27 BC 28
## Min. :-0.41234 Min. :-0.37424 Min. :-0.3661 Min. :-0.45316
## 1st Qu.:-0.05760 1st Qu.:-0.06394 1st Qu.:-0.0692 1st Qu.:-0.05082
## Median : 0.01065 Median : 0.00776 Median :-0.0119 Median : 0.00772
## Mean : 0.00246 Mean : 0.00160 Mean :-0.0096 Mean : 0.00456
## 3rd Qu.: 0.05838 3rd Qu.: 0.06065 3rd Qu.: 0.0509 3rd Qu.: 0.06762
## Max. : 0.45614 Max. : 0.42619 Max. : 0.3875 Max. : 0.51087
## BC 29 BC 30 BC 31 BC 32
## Min. :-0.45688 Min. :-0.35264 Min. :-0.474413 Min. :-0.47171
## 1st Qu.:-0.04651 1st Qu.:-0.05341 1st Qu.:-0.050898 1st Qu.:-0.05937
## Median : 0.01390 Median : 0.01023 Median : 0.003517 Median :-0.00131
## Mean : 0.00603 Mean : 0.00284 Mean : 0.000253 Mean : 0.00095
## 3rd Qu.: 0.06486 3rd Qu.: 0.05901 3rd Qu.: 0.052240 3rd Qu.: 0.05286
## Max. : 0.41573 Max. : 0.31738 Max. : 0.368727 Max. : 0.35039
## BC 33 BC 34 BC 35 BC 36
## Min. :-0.4475 Min. :-0.46650 Min. :-0.39517 Min. :-0.43558
## 1st Qu.:-0.0655 1st Qu.:-0.07821 1st Qu.:-0.04894 1st Qu.:-0.06146
## Median :-0.0159 Median : 0.00316 Median : 0.00644 Median :-0.00774
## Mean :-0.0103 Mean : 0.00180 Mean : 0.00412 Mean :-0.00586
## 3rd Qu.: 0.0384 3rd Qu.: 0.07319 3rd Qu.: 0.06438 3rd Qu.: 0.04410
## Max. : 0.4070 Max. : 0.56378 Max. : 0.29570 Max. : 0.50803
## BC 37 BC 38 BC 39 BC 40
## Min. :-0.34818 Min. :-0.517118 Min. :-0.34873 Min. :-4.01e-01
## 1st Qu.:-0.05360 1st Qu.:-0.048567 1st Qu.:-0.05611 1st Qu.:-4.55e-02
## Median :-0.00416 Median : 0.004237 Median :-0.01241 Median :-3.98e-03
## Mean :-0.00183 Mean : 0.000285 Mean :-0.00506 Mean :-3.72e-05
## 3rd Qu.: 0.04841 3rd Qu.: 0.058465 3rd Qu.: 0.04869 3rd Qu.: 5.03e-02
## Max. : 0.30242 Max. : 0.384646 Max. : 0.27256 Max. : 3.21e-01
## BC 41 BC 42 BC 43
## Min. :-0.567878 Min. :-3.55e-01 Min. :-0.4500
## 1st Qu.:-0.043734 1st Qu.:-5.33e-02 1st Qu.:-0.0766
## Median : 0.000862 Median :-3.59e-05 Median :-0.0159
## Mean : 0.004638 Mean :-1.93e-03 Mean :-0.0074
## 3rd Qu.: 0.056179 3rd Qu.: 4.57e-02 3rd Qu.: 0.0657
## Max. : 0.299498 Max. : 5.67e-01 Max. : 0.3720plot(fabia_43)
extractPlot(fabia_43)
fabia_results = list("1bc" = fabia_1,
"2bc" = fabia_2,
"3bc" = fabia_3,
"5bc" = fabia_5,
"10bc" = fabia_10,
"15bc" = fabia_15,
"20bc" = fabia_20,
"35bc" = fabia_35,
"43bc" = fabia_43)
saveRDS(fabia_results, file = "data/out_models/results_fabia.rds")2. Meta Data Exploration
data.horizontal = readRDS("data/derived/data_horizontal.rds")
meta.data = data.horizontal$colData.selectedA. Bicluster Loading & Metadata
bind.Z.meta = function(fabia.result) {
Z.df = as.data.frame(t(as.matrix(fabia.result@Z)))
if (identical(rownames(Z.df), rownames(meta.data))) {
return(cbind(Z.df, meta.data))
} else {
stop("Z and Meta Data Sample names mismatched!")
}
}1 Bicluster
#Z.df = as.data.frame(t(as.matrix(fabia_1@Z)))
#identical(rownames(Z.df), rownames(meta.data))
#df.Zmeta = cbind(Z.df, meta.data)
#plot(as.data.frame(t(as.matrix(fabia_1@Z))))Death/Survival time:
ggplot(data = bind.Z.meta(fabia_1), aes(x = patientID, y = bicluster1, color = event_time)) +
geom_point() +
scale_color_gradient(low = 'green', high = 'red') +
scale_x_discrete(guide = guide_axis(angle = 90)) +
ggtitle("Biscluster scores of patientIDs \n(1-Bicuster FABIA)") +
theme(plot.title = element_text(hjust = 0.5))
Vital Status:
ggplot(data = bind.Z.meta(fabia_1), aes(x = patientID, y = bicluster1, color = vital_status)) +
geom_point() +
scale_color_manual(values = c("blue","red")) +
scale_x_discrete(guide = guide_axis(angle = 90)) +
ggtitle("Biscluster scores of patientIDs \n(1-Bicuster FABIA)") +
theme(plot.title = element_text(hjust = 0.5))
2 Biclusters
Death/Survival time:
ggplot(data = bind.Z.meta(fabia_2), aes(x = patientID, y = bicluster1, color = event_time)) +
geom_point() +
scale_color_gradient(low = 'green', high = 'red') +
scale_x_discrete(guide = guide_axis(angle = 90)) +
ggtitle("Biscluster scores of patientIDs \n(2-Bicusters FABIA)") +
theme(plot.title = element_text(hjust = 0.5))
ggplot(data = bind.Z.meta(fabia_2), aes(x = patientID, y = bicluster2, color = event_time)) +
geom_point() +
scale_color_gradient(low = 'green', high = 'red') +
scale_x_discrete(guide = guide_axis(angle = 90)) +
ggtitle("Biscluster scores of patientIDs \n(2-Bicusters FABIA)") +
theme(plot.title = element_text(hjust = 0.5))
Vital Status:
ggplot(data = bind.Z.meta(fabia_2), aes(x = patientID, y = bicluster1, color = vital_status)) +
geom_point() +
scale_color_manual(values = c("blue","red")) +
scale_x_discrete(guide = guide_axis(angle = 90)) +
ggtitle("Biscluster scores of patientIDs \n(2-Bicusters FABIA)") +
theme(plot.title = element_text(hjust = 0.5))
ggplot(data = bind.Z.meta(fabia_2), aes(x = patientID, y = bicluster2, color = vital_status)) +
geom_point() +
scale_color_manual(values = c("blue","red")) +
scale_x_discrete(guide = guide_axis(angle = 90)) +
ggtitle("Biscluster scores of patientIDs \n(2-Bicusters FABIA)") +
theme(plot.title = element_text(hjust = 0.5))
3 Biclusters
Death/Survival time:
ggplot(data = bind.Z.meta(fabia_3), aes(x = patientID, y = bicluster1, color = event_time)) +
geom_point() +
scale_color_gradient(low = 'green', high = 'red') +
scale_x_discrete(guide = guide_axis(angle = 90)) +
ggtitle("Biscluster scores of patientIDs \n(3-Bicusters FABIA)") +
theme(plot.title = element_text(hjust = 0.5))
ggplot(data = bind.Z.meta(fabia_3), aes(x = patientID, y = bicluster2, color = event_time)) +
geom_point() +
scale_color_gradient(low = 'green', high = 'red') +
scale_x_discrete(guide = guide_axis(angle = 90)) +
ggtitle("Biscluster scores of patientIDs \n(3-Bicusters FABIA)") +
theme(plot.title = element_text(hjust = 0.5))
ggplot(data = bind.Z.meta(fabia_3), aes(x = patientID, y = bicluster3, color = event_time)) +
geom_point() +
scale_color_gradient(low = 'green', high = 'red') +
scale_x_discrete(guide = guide_axis(angle = 90)) +
ggtitle("Biscluster scores of patientIDs \n(3-Bicusters FABIA)") +
theme(plot.title = element_text(hjust = 0.5))
Vital Status:
ggplot(data = bind.Z.meta(fabia_3), aes(x = patientID, y = bicluster1, color = vital_status)) +
geom_point() +
scale_color_manual(values = c("blue","red")) +
scale_x_discrete(guide = guide_axis(angle = 90)) +
ggtitle("Biscluster scores of patientIDs \n(3-Bicusters FABIA)") +
theme(plot.title = element_text(hjust = 0.5))
ggplot(data = bind.Z.meta(fabia_3), aes(x = patientID, y = bicluster2, color = vital_status)) +
geom_point() +
scale_color_manual(values = c("blue","red")) +
scale_x_discrete(guide = guide_axis(angle = 90)) +
ggtitle("Biscluster scores of patientIDs \n(3-Bicusters FABIA)") +
theme(plot.title = element_text(hjust = 0.5))
ggplot(data = bind.Z.meta(fabia_3), aes(x = patientID, y = bicluster3, color = vital_status)) +
geom_point() +
scale_color_manual(values = c("blue","red")) +
scale_x_discrete(guide = guide_axis(angle = 90)) +
ggtitle("Biscluster scores of patientIDs \n(3-Bicusters FABIA)") +
theme(plot.title = element_text(hjust = 0.5))
3. Results comparison
A. Average information content per bicluster
info.content = data.frame(
biclusters = c(1,2,3,5,10,15,20,35,43),
info.sum = c(fabia_1@avini[2],
fabia_2@avini[3],
fabia_3@avini[4],
fabia_5@avini[6],
fabia_10@avini[11],
fabia_15@avini[16],
fabia_20@avini[21],
fabia_35@avini[36],
fabia_43@avini[44])
)info.content$info.avg = info.content$info.sum/info.content$biclustersplot(info.content$biclusters, info.content$info.avg)
#ggplot(data = BCs, aes(x = biclusters))B. Top n% features of each Bicluster
top_x_percent = function(fabia.result, perct = 5, print = T, show.loading = F) {
quantile = 1 - perct * 0.01
fabia_L = fabia.result@L
out.list = vector("list", length = ncol(fabia_L))
names(out.list) = colnames(fabia_L)
for (i in 1:ncol(fabia_L)) {
L_curr = fabia_L[,i]
quant = quantile(abs(L_curr), quantile)
sel = abs(L_curr) >= quant
out.list[[i]] = L_curr[sel]
if(print) {
print(colnames(fabia_L)[i])
if (show.loading) {
print(L_curr[sel])
} else {
print(names(L_curr[sel]))
}
}
}
out.list
}
#boxplot(fabia_1@L)Top 5%
f1_5 = top_x_percent(fabia_1)## [1] "bicluster1"
## [1] "G6PD.RPPA" "TGM2.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [5] "hsa-mir-1197" "hsa-mir-127" "hsa-mir-134" "hsa-mir-136"
## [9] "hsa-mir-154" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [13] "hsa-mir-329-2" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [17] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-380" "hsa-mir-382"
## [21] "hsa-mir-409" "hsa-mir-411" "hsa-mir-433" "hsa-mir-485"
## [25] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-496" "hsa-mir-541"
## [29] "hsa-mir-543" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [33] "hsa-mir-665" "hsa-mir-668" "hsa-mir-770" "hsa-mir-889"f2_5 = top_x_percent(fabia_2)## [1] "bicluster2"
## [1] "G6PD.RPPA" "FASN.RPPA" "TGM2.R2Gn" "hsa-mir-1185-1"
## [5] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-323" "hsa-mir-329-1"
## [9] "hsa-mir-329-2" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [13] "hsa-mir-377" "hsa-mir-380" "hsa-mir-411" "hsa-mir-433"
## [17] "hsa-mir-466" "hsa-mir-487a" "hsa-mir-494" "hsa-mir-506"
## [21] "hsa-mir-507" "hsa-mir-508" "hsa-mir-510" "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [29] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-541" "hsa-mir-655"
## [33] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-770"
## [1] "bicluster1"
## [1] "FN1.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn" "hsa-mir-1185-1"
## [5] "hsa-mir-1185-2" "hsa-mir-135b" "hsa-mir-206" "hsa-mir-3166"
## [9] "hsa-mir-3199-1" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-376a-2"
## [13] "hsa-mir-380" "hsa-mir-3923" "hsa-mir-411" "hsa-mir-433"
## [17] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494" "hsa-mir-506"
## [21] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [25] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [29] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [33] "hsa-mir-543" "hsa-mir-655" "hsa-mir-656" "hsa-mir-668"f3_5 = top_x_percent(fabia_3)## [1] "bicluster2"
## [1] "G6PD.RPPA" "FASN.RPPA" "TTF1.RPPA" "TGM2.R2Gn"
## [5] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1197" "hsa-mir-329-1"
## [9] "hsa-mir-329-2" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-377"
## [13] "hsa-mir-380" "hsa-mir-466" "hsa-mir-487a" "hsa-mir-506"
## [17] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [21] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [25] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [29] "hsa-mir-514-3" "hsa-mir-541" "hsa-mir-605" "hsa-mir-655"
## [33] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-770"
## [1] "bicluster3"
## [1] "GATA3.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn" "CTNNB1.R2Gn"
## [5] "CCND1.R2Gn" "hsa-mir-1185-1" "hsa-mir-124-3" "hsa-mir-135b"
## [9] "hsa-mir-206" "hsa-mir-2114" "hsa-mir-3166" "hsa-mir-3199-1"
## [13] "hsa-mir-3655" "hsa-mir-3923" "hsa-mir-3926-2" "hsa-mir-411"
## [17] "hsa-mir-429" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-506"
## [21] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [25] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [29] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [33] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-582" "hsa-mir-656"
## [1] "bicluster1"
## [1] "CTNNB1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [5] "hsa-mir-127" "hsa-mir-134" "hsa-mir-136" "hsa-mir-154"
## [9] "hsa-mir-206" "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b"
## [13] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-370" "hsa-mir-376a-1"
## [17] "hsa-mir-376a-2" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-380"
## [21] "hsa-mir-382" "hsa-mir-409" "hsa-mir-411" "hsa-mir-433"
## [25] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494" "hsa-mir-496"
## [29] "hsa-mir-517a" "hsa-mir-541" "hsa-mir-543" "hsa-mir-654"
## [33] "hsa-mir-655" "hsa-mir-656" "hsa-mir-668" "hsa-mir-889"f5_5 = top_x_percent(fabia_5)## [1] "bicluster2"
## [1] "G6PD.RPPA" "FASN.RPPA" "TGM2.R2Gn" "hsa-mir-1185-1"
## [5] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-127" "hsa-mir-134"
## [9] "hsa-mir-154" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [13] "hsa-mir-329-2" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [17] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-380" "hsa-mir-382"
## [21] "hsa-mir-409" "hsa-mir-411" "hsa-mir-433" "hsa-mir-485"
## [25] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-496" "hsa-mir-541"
## [29] "hsa-mir-543" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [33] "hsa-mir-665" "hsa-mir-668" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster5"
## [1] "RBM15.RPPA" "GATA3.RPPA" "FASN.RPPA" "VHL.RPPA"
## [5] "FN1.R2Gn" "CDH2.R2Gn" "GATA3.R2Gn" "CTNNB1.R2Gn"
## [9] "CCND1.R2Gn" "hsa-mir-124-3" "hsa-mir-1258" "hsa-mir-135b"
## [13] "hsa-mir-139" "hsa-mir-206" "hsa-mir-2114" "hsa-mir-3166"
## [17] "hsa-mir-3199-1" "hsa-mir-3655" "hsa-mir-3923" "hsa-mir-3926-2"
## [21] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [25] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [29] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [33] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-605"
## [1] "bicluster1"
## [1] "FASN.RPPA" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [5] "hsa-mir-323" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-376a-1"
## [9] "hsa-mir-376a-2" "hsa-mir-377" "hsa-mir-380" "hsa-mir-431"
## [13] "hsa-mir-432" "hsa-mir-433" "hsa-mir-466" "hsa-mir-487a"
## [17] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [21] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [29] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-541" "hsa-mir-655"
## [33] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-770"
## [1] "bicluster4"
## [1] "G6PD.RPPA" "GATA3.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn"
## [5] "CCND1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1269"
## [9] "hsa-mir-135b" "hsa-mir-206" "hsa-mir-2114" "hsa-mir-3166"
## [13] "hsa-mir-329-1" "hsa-mir-3655" "hsa-mir-377" "hsa-mir-3923"
## [17] "hsa-mir-411" "hsa-mir-429" "hsa-mir-485" "hsa-mir-487a"
## [21] "hsa-mir-494" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [25] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [29] "hsa-mir-513a-2" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [33] "hsa-mir-514b" "hsa-mir-543" "hsa-mir-655" "hsa-mir-656"
## [1] "bicluster3"
## [1] "CTNNB1.R2Gn" "TGM2.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [5] "hsa-mir-1197" "hsa-mir-206" "hsa-mir-323" "hsa-mir-323b"
## [9] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-370" "hsa-mir-376a-1"
## [13] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-380" "hsa-mir-409"
## [17] "hsa-mir-411" "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a"
## [21] "hsa-mir-494" "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1"
## [25] "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-519a-2" "hsa-mir-520a"
## [29] "hsa-mir-541" "hsa-mir-543" "hsa-mir-654" "hsa-mir-655"
## [33] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-770"f10_5 = top_x_percent(fabia_10)## [1] "bicluster9"
## [1] "G6PD.RPPA" "FASN.RPPA" "TGM2.R2Gn" "hsa-mir-1185-1"
## [5] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-127" "hsa-mir-134"
## [9] "hsa-mir-136" "hsa-mir-154" "hsa-mir-323" "hsa-mir-323b"
## [13] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-370" "hsa-mir-376a-1"
## [17] "hsa-mir-376a-2" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-380"
## [21] "hsa-mir-382" "hsa-mir-409" "hsa-mir-411" "hsa-mir-485"
## [25] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-496" "hsa-mir-541"
## [29] "hsa-mir-543" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [33] "hsa-mir-665" "hsa-mir-668" "hsa-mir-770" "hsa-mir-876"
## [1] "bicluster10"
## [1] "FASN.RPPA" "TTF1.RPPA" "VHL.RPPA" "IGFBP2.R2Gn"
## [5] "FASN.R2Gn" "CTNNB1.R2Gn" "PIK3R1.R2Gn" "hsa-mir-1193"
## [9] "hsa-mir-1258" "hsa-mir-2114" "hsa-mir-329-2" "hsa-mir-380"
## [13] "hsa-mir-3909" "hsa-mir-3922" "hsa-mir-3926-2" "hsa-mir-466"
## [17] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [21] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [29] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-605"
## [33] "hsa-mir-656" "hsa-mir-665" "hsa-mir-770" "hsa-mir-876"
## [1] "bicluster7"
## [1] "GATA3.RPPA" "FN1.R2Gn" "GATA3.R2Gn" "CTNNB1.R2Gn"
## [5] "CCND1.R2Gn" "hsa-mir-1185-1" "hsa-mir-135b" "hsa-mir-206"
## [9] "hsa-mir-2114" "hsa-mir-296" "hsa-mir-3166" "hsa-mir-3199-1"
## [13] "hsa-mir-320c-2" "hsa-mir-3655" "hsa-mir-3923" "hsa-mir-3926-2"
## [17] "hsa-mir-411" "hsa-mir-429" "hsa-mir-485" "hsa-mir-487a"
## [21] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [25] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [29] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [33] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-656"
## [1] "bicluster2"
## [1] "G6PD.RPPA" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [5] "hsa-mir-127" "hsa-mir-134" "hsa-mir-136" "hsa-mir-154"
## [9] "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [13] "hsa-mir-329-2" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [17] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379" "hsa-mir-380"
## [21] "hsa-mir-382" "hsa-mir-409" "hsa-mir-411" "hsa-mir-433"
## [25] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494" "hsa-mir-496"
## [29] "hsa-mir-541" "hsa-mir-543" "hsa-mir-654" "hsa-mir-655"
## [33] "hsa-mir-656" "hsa-mir-668" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster1"
## [1] "FN1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [5] "hsa-mir-127" "hsa-mir-134" "hsa-mir-136" "hsa-mir-154"
## [9] "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [13] "hsa-mir-329-2" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [17] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379" "hsa-mir-380"
## [21] "hsa-mir-382" "hsa-mir-409" "hsa-mir-411" "hsa-mir-433"
## [25] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494" "hsa-mir-496"
## [29] "hsa-mir-541" "hsa-mir-543" "hsa-mir-654" "hsa-mir-655"
## [33] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-770"
## [1] "bicluster3"
## [1] "FASN.RPPA" "TGM2.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [5] "hsa-mir-1197" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [9] "hsa-mir-376a-1" "hsa-mir-380" "hsa-mir-433" "hsa-mir-487a"
## [13] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [17] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [21] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [25] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-516a-1"
## [29] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [33] "hsa-mir-541" "hsa-mir-656" "hsa-mir-668" "hsa-mir-770"
## [1] "bicluster8"
## [1] "G6PD.RPPA" "ERBB3.R2Gn" "TGM2.R2Gn" "hsa-mir-1185-1"
## [5] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-136" "hsa-mir-154"
## [9] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [13] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-377"
## [17] "hsa-mir-380" "hsa-mir-382" "hsa-mir-409" "hsa-mir-411"
## [21] "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b"
## [25] "hsa-mir-494" "hsa-mir-496" "hsa-mir-517a" "hsa-mir-541"
## [29] "hsa-mir-543" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [33] "hsa-mir-665" "hsa-mir-668" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster6"
## [1] "G6PD.RPPA" "RBM15.RPPA" "FASN.RPPA" "VHL.RPPA"
## [5] "GAPDH.RPPA" "MSH6.RPPA" "CDH2.R2Gn" "EEF2.R2Gn"
## [9] "SQSTM1.R2Gn" "hsa-mir-1193" "hsa-mir-124-3" "hsa-mir-1258"
## [13] "hsa-mir-1270-1" "hsa-mir-3926-2" "hsa-mir-3934" "hsa-mir-466"
## [17] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [21] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [29] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-548v"
## [33] "hsa-mir-552" "hsa-mir-592" "hsa-mir-605" "hsa-mir-653"
## [1] "bicluster5"
## [1] "CDH2.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn" "hsa-mir-1185-1"
## [5] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-1269" "hsa-mir-127"
## [9] "hsa-mir-136" "hsa-mir-154" "hsa-mir-323" "hsa-mir-323b"
## [13] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-370" "hsa-mir-376a-1"
## [17] "hsa-mir-376a-2" "hsa-mir-380" "hsa-mir-381" "hsa-mir-410"
## [21] "hsa-mir-411" "hsa-mir-432" "hsa-mir-433" "hsa-mir-485"
## [25] "hsa-mir-487a" "hsa-mir-488" "hsa-mir-494" "hsa-mir-495"
## [29] "hsa-mir-496" "hsa-mir-541" "hsa-mir-543" "hsa-mir-552"
## [33] "hsa-mir-654" "hsa-mir-655" "hsa-mir-668" "hsa-mir-889"
## [1] "bicluster4"
## [1] "G6PD.RPPA" "NF2.RPPA" "G6PD.R2Gn" "TFRC.R2Gn"
## [5] "PXN.R2Gn" "hsa-mir-105-1" "hsa-mir-105-2" "hsa-mir-1185-1"
## [9] "hsa-mir-1185-2" "hsa-mir-1249" "hsa-mir-1269" "hsa-mir-134"
## [13] "hsa-mir-136" "hsa-mir-216b" "hsa-mir-217" "hsa-mir-329-1"
## [17] "hsa-mir-329-2" "hsa-mir-377" "hsa-mir-380" "hsa-mir-433"
## [21] "hsa-mir-483" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494"
## [25] "hsa-mir-507" "hsa-mir-543" "hsa-mir-552" "hsa-mir-577"
## [29] "hsa-mir-598" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [33] "hsa-mir-668" "hsa-mir-767" "hsa-mir-770" "hsa-mir-876"f15_5 = top_x_percent(fabia_15)## [1] "bicluster10"
## [1] "G6PD.RPPA" "FASN.RPPA" "TSC1.RPPA" "TFRC.RPPA"
## [5] "IGFBP2.R2Gn" "CTNNB1.R2Gn" "PIK3R1.R2Gn" "GAPDH.R2Gn"
## [9] "hsa-mir-1193" "hsa-mir-1258" "hsa-mir-2114" "hsa-mir-329-2"
## [13] "hsa-mir-376a-1" "hsa-mir-380" "hsa-mir-3922" "hsa-mir-466"
## [17] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [21] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [29] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-541"
## [33] "hsa-mir-605" "hsa-mir-656" "hsa-mir-665" "hsa-mir-770"
## [1] "bicluster9"
## [1] "G6PD.RPPA" "TGM2.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [5] "hsa-mir-1197" "hsa-mir-127" "hsa-mir-134" "hsa-mir-154"
## [9] "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [13] "hsa-mir-329-2" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [17] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-380" "hsa-mir-382"
## [21] "hsa-mir-409" "hsa-mir-411" "hsa-mir-433" "hsa-mir-485"
## [25] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-496" "hsa-mir-517a"
## [29] "hsa-mir-541" "hsa-mir-543" "hsa-mir-654" "hsa-mir-655"
## [33] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-770"
## [1] "bicluster13"
## [1] "TGM2.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [5] "hsa-mir-154" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [9] "hsa-mir-329-2" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [13] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-380"
## [17] "hsa-mir-382" "hsa-mir-409" "hsa-mir-411" "hsa-mir-433"
## [21] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-494"
## [25] "hsa-mir-496" "hsa-mir-510" "hsa-mir-518b" "hsa-mir-541"
## [29] "hsa-mir-543" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [33] "hsa-mir-665" "hsa-mir-668" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster2"
## [1] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-127"
## [5] "hsa-mir-134" "hsa-mir-136" "hsa-mir-154" "hsa-mir-299"
## [9] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [13] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376c"
## [17] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-382"
## [21] "hsa-mir-409" "hsa-mir-411" "hsa-mir-433" "hsa-mir-485"
## [25] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-496" "hsa-mir-541"
## [29] "hsa-mir-543" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [33] "hsa-mir-668" "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster11"
## [1] "GATA3.RPPA" "ERBB3.R2Gn" "FN1.R2Gn" "CTNNB1.R2Gn"
## [5] "CCND1.R2Gn" "hsa-mir-1185-1" "hsa-mir-124-3" "hsa-mir-135b"
## [9] "hsa-mir-206" "hsa-mir-3166" "hsa-mir-3655" "hsa-mir-3926-2"
## [13] "hsa-mir-411" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494"
## [17] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [21] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [29] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-516a-1"
## [33] "hsa-mir-516a-2" "hsa-mir-543" "hsa-mir-655" "hsa-mir-656"
## [1] "bicluster1"
## [1] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-127"
## [5] "hsa-mir-134" "hsa-mir-136" "hsa-mir-154" "hsa-mir-299"
## [9] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [13] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376c"
## [17] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-382"
## [21] "hsa-mir-409" "hsa-mir-411" "hsa-mir-433" "hsa-mir-485"
## [25] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-496" "hsa-mir-541"
## [29] "hsa-mir-543" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [33] "hsa-mir-665" "hsa-mir-668" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster12"
## [1] "IGFBP2.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn" "CTNNB1.R2Gn"
## [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1269" "hsa-mir-135b"
## [9] "hsa-mir-206" "hsa-mir-2114" "hsa-mir-296" "hsa-mir-3144"
## [13] "hsa-mir-3166" "hsa-mir-3923" "hsa-mir-411" "hsa-mir-429"
## [17] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494" "hsa-mir-506"
## [21] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [25] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [29] "hsa-mir-513b" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [33] "hsa-mir-514b" "hsa-mir-543" "hsa-mir-655" "hsa-mir-656"
## [1] "bicluster7"
## [1] "GATA3.RPPA" "GATA3.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn"
## [5] "hsa-mir-1185-1" "hsa-mir-124-3" "hsa-mir-1269" "hsa-mir-206"
## [9] "hsa-mir-2114" "hsa-mir-296" "hsa-mir-3166" "hsa-mir-3199-1"
## [13] "hsa-mir-3655" "hsa-mir-3923" "hsa-mir-411" "hsa-mir-485"
## [17] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [21] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [29] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-543"
## [33] "hsa-mir-548q" "hsa-mir-582" "hsa-mir-656" "hsa-mir-668"
## [1] "bicluster15"
## [1] "G6PD.RPPA" "RBM15.RPPA" "FASN.RPPA" "TTF1.RPPA"
## [5] "VHL.RPPA" "AKT2.R2Gn" "PXN.R2Gn" "SQSTM1.R2Gn"
## [9] "hsa-mir-1258" "hsa-mir-196a-2" "hsa-mir-196b" "hsa-mir-2114"
## [13] "hsa-mir-329-2" "hsa-mir-3926-2" "hsa-mir-466" "hsa-mir-506"
## [17] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [21] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [25] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [29] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-552" "hsa-mir-605"
## [33] "hsa-mir-615" "hsa-mir-656" "hsa-mir-665" "hsa-mir-876"
## [1] "bicluster8"
## [1] "G6PD.RPPA" "ERBB3.R2Gn" "FN1.R2Gn" "AKT2.R2Gn"
## [5] "BIRC2.R2Gn" "GAPDH.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn"
## [9] "PARP1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [13] "hsa-mir-194-1" "hsa-mir-194-2" "hsa-mir-3130-1" "hsa-mir-3170"
## [17] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [21] "hsa-mir-377" "hsa-mir-380" "hsa-mir-3922" "hsa-mir-411"
## [25] "hsa-mir-433" "hsa-mir-466" "hsa-mir-487a" "hsa-mir-496"
## [29] "hsa-mir-543" "hsa-mir-548s" "hsa-mir-654" "hsa-mir-655"
## [33] "hsa-mir-656" "hsa-mir-668" "hsa-mir-887" "hsa-mir-889"
## [1] "bicluster3"
## [1] "ERBB3.R2Gn" "CDH2.R2Gn" "BECN1.R2Gn" "GATA3.R2Gn"
## [5] "ADAR.R2Gn" "STMN1.R2Gn" "TGM2.R2Gn" "PIK3R1.R2Gn"
## [9] "ERRFI1.R2Gn" "PARP1.R2Gn" "hsa-mir-133b" "hsa-mir-187"
## [13] "hsa-mir-192" "hsa-mir-194-1" "hsa-mir-194-2" "hsa-mir-196b"
## [17] "hsa-mir-205" "hsa-mir-3130-1" "hsa-mir-3170" "hsa-mir-3191"
## [21] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-383" "hsa-mir-507"
## [25] "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-514b"
## [29] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"
## [33] "hsa-mir-518b" "hsa-mir-577" "hsa-mir-9-3" "hsa-mir-939"
## [1] "bicluster14"
## [1] "G6PD.RPPA" "CTNNB1.R2Gn" "TGM2.R2Gn" "hsa-mir-1185-1"
## [5] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-1269" "hsa-mir-135a-1"
## [9] "hsa-mir-138-1" "hsa-mir-154" "hsa-mir-206" "hsa-mir-3199-1"
## [13] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [17] "hsa-mir-370" "hsa-mir-376a-2" "hsa-mir-377" "hsa-mir-380"
## [21] "hsa-mir-382" "hsa-mir-411" "hsa-mir-433" "hsa-mir-485"
## [25] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-496" "hsa-mir-517a"
## [29] "hsa-mir-541" "hsa-mir-543" "hsa-mir-654" "hsa-mir-655"
## [33] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-770"
## [1] "bicluster5"
## [1] "EGFR.RPPA" "FASN.RPPA" "GAPDH.RPPA" "CTNNB1.R2Gn"
## [5] "GAPDH.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-127"
## [9] "hsa-mir-136" "hsa-mir-154" "hsa-mir-200a" "hsa-mir-200b"
## [13] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [17] "hsa-mir-370" "hsa-mir-376a-2" "hsa-mir-380" "hsa-mir-381"
## [21] "hsa-mir-3909" "hsa-mir-410" "hsa-mir-411" "hsa-mir-433"
## [25] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494" "hsa-mir-495"
## [29] "hsa-mir-541" "hsa-mir-543" "hsa-mir-548v" "hsa-mir-654"
## [33] "hsa-mir-655" "hsa-mir-656" "hsa-mir-668" "hsa-mir-770"
## [1] "bicluster6"
## [1] "RBM15.RPPA" "ATM.RPPA" "FASN.RPPA" "INPP4B.RPPA"
## [5] "PRDX1.RPPA" "MSH6.RPPA" "TFRC.RPPA" "PREX1.RPPA"
## [9] "CDH2.R2Gn" "FASN.R2Gn" "EEF2.R2Gn" "RPS6.R2Gn"
## [13] "PRKCA.R2Gn" "STMN1.R2Gn" "STAT3.R2Gn" "CDK1.R2Gn"
## [17] "PIK3R1.R2Gn" "CCNB1.R2Gn" "HSPA1A.R2Gn" "PXN.R2Gn"
## [21] "ERRFI1.R2Gn" "RET.R2Gn" "hsa-mir-105-2" "hsa-mir-1193"
## [25] "hsa-mir-135b" "hsa-mir-138-1" "hsa-mir-216a" "hsa-mir-29b-1"
## [29] "hsa-mir-29b-2" "hsa-mir-3191" "hsa-mir-3922" "hsa-mir-3923"
## [33] "hsa-mir-3926-2" "hsa-mir-510" "hsa-mir-605" "hsa-mir-767"
## [1] "bicluster4"
## [1] "G6PD.RPPA" "GATA3.RPPA" "MYH11.RPPA" "G6PD.R2Gn"
## [5] "IGFBP2.R2Gn" "EEF2.R2Gn" "RPS6.R2Gn" "PIK3R1.R2Gn"
## [9] "GAPDH.R2Gn" "hsa-mir-105-1" "hsa-mir-105-2" "hsa-mir-1249"
## [13] "hsa-mir-125b-2" "hsa-mir-1270-2" "hsa-mir-182" "hsa-mir-183"
## [17] "hsa-mir-216b" "hsa-mir-217" "hsa-mir-218-1" "hsa-mir-326"
## [21] "hsa-mir-329-2" "hsa-mir-380" "hsa-mir-3926-1" "hsa-mir-3926-2"
## [25] "hsa-mir-487a" "hsa-mir-488" "hsa-mir-509-2" "hsa-mir-548q"
## [29] "hsa-mir-570" "hsa-mir-585" "hsa-mir-642a" "hsa-mir-655"
## [33] "hsa-mir-767" "hsa-mir-891a" "hsa-mir-939" "hsa-mir-96"f20_5 = top_x_percent(fabia_20)## [1] "bicluster10"
## [1] "G6PD.RPPA" "RBM15.RPPA" "ATM.RPPA" "FASN.RPPA"
## [5] "TSC1.RPPA" "GAPDH.RPPA" "TFRC.RPPA" "FN1.R2Gn"
## [9] "CTNNB1.R2Gn" "GAPDH.R2Gn" "PXN.R2Gn" "hsa-mir-1258"
## [13] "hsa-mir-2114" "hsa-mir-329-2" "hsa-mir-3926-2" "hsa-mir-466"
## [17] "hsa-mir-490" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [21] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [25] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [29] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [33] "hsa-mir-605" "hsa-mir-665" "hsa-mir-767" "hsa-mir-876"
## [1] "bicluster9"
## [1] "G6PD.RPPA" "TTF1.RPPA" "TGM2.R2Gn" "SQSTM1.R2Gn"
## [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-1269"
## [9] "hsa-mir-134" "hsa-mir-136" "hsa-mir-154" "hsa-mir-299"
## [13] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [17] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376c"
## [21] "hsa-mir-377" "hsa-mir-380" "hsa-mir-409" "hsa-mir-411"
## [25] "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494"
## [29] "hsa-mir-541" "hsa-mir-543" "hsa-mir-654" "hsa-mir-655"
## [33] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-770"
## [1] "bicluster19"
## [1] "TGM2.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [5] "hsa-mir-154" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [9] "hsa-mir-329-2" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [13] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-380" "hsa-mir-382"
## [17] "hsa-mir-409" "hsa-mir-411" "hsa-mir-433" "hsa-mir-485"
## [21] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-496" "hsa-mir-516a-1"
## [25] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [29] "hsa-mir-541" "hsa-mir-543" "hsa-mir-654" "hsa-mir-655"
## [33] "hsa-mir-656" "hsa-mir-668" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster1"
## [1] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-127"
## [5] "hsa-mir-134" "hsa-mir-136" "hsa-mir-154" "hsa-mir-299"
## [9] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [13] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [17] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-380" "hsa-mir-382"
## [21] "hsa-mir-409" "hsa-mir-411" "hsa-mir-433" "hsa-mir-485"
## [25] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-496" "hsa-mir-541"
## [29] "hsa-mir-543" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [33] "hsa-mir-665" "hsa-mir-668" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster2"
## [1] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-127"
## [5] "hsa-mir-134" "hsa-mir-154" "hsa-mir-299" "hsa-mir-323"
## [9] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-369"
## [13] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"
## [17] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-380" "hsa-mir-382"
## [21] "hsa-mir-409" "hsa-mir-411" "hsa-mir-485" "hsa-mir-487a"
## [25] "hsa-mir-494" "hsa-mir-496" "hsa-mir-541" "hsa-mir-543"
## [29] "hsa-mir-580" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [33] "hsa-mir-668" "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster16"
## [1] "ERBB3.R2Gn" "IGFBP2.R2Gn" "ERRFI1.R2Gn" "hsa-mir-1185-1"
## [5] "hsa-mir-1193" "hsa-mir-1197" "hsa-mir-323" "hsa-mir-323b"
## [9] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-376a-1" "hsa-mir-380"
## [13] "hsa-mir-3922" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [17] "hsa-mir-466" "hsa-mir-487a" "hsa-mir-488" "hsa-mir-506"
## [21] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [25] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [29] "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [33] "hsa-mir-541" "hsa-mir-656" "hsa-mir-668" "hsa-mir-770"
## [1] "bicluster17"
## [1] "RBM15.RPPA" "PTEN.RPPA" "FASN.RPPA" "TSC1.RPPA"
## [5] "PDCD4.RPPA" "VHL.RPPA" "GATA3.R2Gn" "PEA15.R2Gn"
## [9] "CTNNB1.R2Gn" "SHC1.R2Gn" "CCND1.R2Gn" "PXN.R2Gn"
## [13] "hsa-mir-1258" "hsa-mir-135b" "hsa-mir-2114" "hsa-mir-3166"
## [17] "hsa-mir-320c-2" "hsa-mir-329-2" "hsa-mir-3926-2" "hsa-mir-466"
## [21] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [25] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [29] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [33] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-767"
## [1] "bicluster15"
## [1] "G6PD.RPPA" "FASN.RPPA" "TTF1.RPPA" "VHL.RPPA"
## [5] "TGM2.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1258"
## [9] "hsa-mir-218-1" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-377"
## [13] "hsa-mir-380" "hsa-mir-3940" "hsa-mir-466" "hsa-mir-487a"
## [17] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [21] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [29] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-615"
## [33] "hsa-mir-656" "hsa-mir-665" "hsa-mir-770" "hsa-mir-876"
## [1] "bicluster13"
## [1] "FASN.RPPA" "FN1.R2Gn" "TGM2.R2Gn" "COL6A1.R2Gn"
## [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193" "hsa-mir-1197"
## [9] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [13] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"
## [17] "hsa-mir-377" "hsa-mir-380" "hsa-mir-3922" "hsa-mir-412"
## [21] "hsa-mir-466" "hsa-mir-487a" "hsa-mir-494" "hsa-mir-496"
## [25] "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513c"
## [29] "hsa-mir-514-2" "hsa-mir-541" "hsa-mir-655" "hsa-mir-656"
## [33] "hsa-mir-665" "hsa-mir-668" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster7"
## [1] "FN1.R2Gn" "CDH2.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn"
## [5] "hsa-mir-1185-1" "hsa-mir-124-1" "hsa-mir-1269" "hsa-mir-135b"
## [9] "hsa-mir-206" "hsa-mir-2114" "hsa-mir-3166" "hsa-mir-3199-1"
## [13] "hsa-mir-3655" "hsa-mir-3923" "hsa-mir-411" "hsa-mir-485"
## [17] "hsa-mir-487a" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [21] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [25] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [29] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [33] "hsa-mir-543" "hsa-mir-582" "hsa-mir-655" "hsa-mir-668"
## [1] "bicluster20"
## [1] "RBM15.RPPA" "GAPDH.RPPA" "ERBB3.R2Gn" "FN1.R2Gn"
## [5] "GATA3.R2Gn" "EIF4G1.R2Gn" "STMN1.R2Gn" "CDK1.R2Gn"
## [9] "GAPDH.R2Gn" "TYMS.R2Gn" "FOXM1.R2Gn" "ERRFI1.R2Gn"
## [13] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-135b" "hsa-mir-187"
## [17] "hsa-mir-3170" "hsa-mir-372" "hsa-mir-3923" "hsa-mir-3926-1"
## [21] "hsa-mir-3926-2" "hsa-mir-411" "hsa-mir-506" "hsa-mir-507"
## [25] "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3"
## [29] "hsa-mir-510" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [33] "hsa-mir-514b" "hsa-mir-655" "hsa-mir-656" "hsa-mir-887"
## [1] "bicluster12"
## [1] "RBM15.RPPA" "MSH6.RPPA" "TFRC.RPPA" "IGFBP2.R2Gn"
## [5] "FN1.R2Gn" "GATA3.R2Gn" "EEF2.R2Gn" "CTNNB1.R2Gn"
## [9] "CCND1.R2Gn" "hsa-mir-1185-2" "hsa-mir-1258" "hsa-mir-135b"
## [13] "hsa-mir-206" "hsa-mir-2114" "hsa-mir-3166" "hsa-mir-3199-1"
## [17] "hsa-mir-320c-2" "hsa-mir-3655" "hsa-mir-3923" "hsa-mir-429"
## [21] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [25] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [29] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [33] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-656"
## [1] "bicluster11"
## [1] "GATA3.RPPA" "EGFR.RPPA" "CTNNB1.R2Gn" "CCND1.R2Gn"
## [5] "RPTOR.R2Gn" "hsa-mir-1185-1" "hsa-mir-124-3" "hsa-mir-1270-1"
## [9] "hsa-mir-1270-2" "hsa-mir-135b" "hsa-mir-206" "hsa-mir-3166"
## [13] "hsa-mir-3199-1" "hsa-mir-411" "hsa-mir-485" "hsa-mir-487a"
## [17] "hsa-mir-494" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [21] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [25] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-514-1" "hsa-mir-514-2"
## [29] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-516a-1" "hsa-mir-525"
## [33] "hsa-mir-543" "hsa-mir-580" "hsa-mir-655" "hsa-mir-656"
## [1] "bicluster14"
## [1] "G6PD.RPPA" "ATM.RPPA" "PDCD4.RPPA" "GAPDH.RPPA"
## [5] "ERBB3.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn" "CTNNB1.R2Gn"
## [9] "GAPDH.R2Gn" "COL6A1.R2Gn" "hsa-mir-105-1" "hsa-mir-105-2"
## [13] "hsa-mir-1185-1" "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-1270-2"
## [17] "hsa-mir-199a-1" "hsa-mir-199a-2" "hsa-mir-199b" "hsa-mir-200b"
## [21] "hsa-mir-214" "hsa-mir-216b" "hsa-mir-3199-1" "hsa-mir-329-1"
## [25] "hsa-mir-3926-1" "hsa-mir-411" "hsa-mir-433" "hsa-mir-517a"
## [29] "hsa-mir-548b" "hsa-mir-548q" "hsa-mir-552" "hsa-mir-577"
## [33] "hsa-mir-655" "hsa-mir-665" "hsa-mir-767" "hsa-mir-876"
## [1] "bicluster18"
## [1] "GATA3.RPPA" "GAPDH.RPPA" "ERBB3.R2Gn" "AKT1S1.R2Gn"
## [5] "GATA3.R2Gn" "EEF2.R2Gn" "TGM2.R2Gn" "CCND1.R2Gn"
## [9] "GAPDH.R2Gn" "MYH9.R2Gn" "TFRC.R2Gn" "HSPA1A.R2Gn"
## [13] "ERRFI1.R2Gn" "PARP1.R2Gn" "hsa-mir-1249" "hsa-mir-1258"
## [17] "hsa-mir-296" "hsa-mir-3130-1" "hsa-mir-3170" "hsa-mir-383"
## [21] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [25] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [29] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [33] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-548q"
## [1] "bicluster5"
## [1] "ATM.RPPA" "EGFR.RPPA" "GAPDH.RPPA" "ERBB3.R2Gn"
## [5] "PEA15.R2Gn" "ADAR.R2Gn" "CTNNB1.R2Gn" "SHC1.R2Gn"
## [9] "TGM2.R2Gn" "GAPDH.R2Gn" "ERRFI1.R2Gn" "hsa-mir-1185-1"
## [13] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-200a" "hsa-mir-299"
## [17] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [21] "hsa-mir-370" "hsa-mir-376a-2" "hsa-mir-380" "hsa-mir-381"
## [25] "hsa-mir-411" "hsa-mir-452" "hsa-mir-485" "hsa-mir-487a"
## [29] "hsa-mir-494" "hsa-mir-518b" "hsa-mir-541" "hsa-mir-543"
## [33] "hsa-mir-655" "hsa-mir-656" "hsa-mir-668" "hsa-mir-889"
## [1] "bicluster6"
## [1] "G6PD.RPPA" "RBM15.RPPA" "ATM.RPPA" "FASN.RPPA"
## [5] "VHL.RPPA" "PRDX1.RPPA" "XBP1.RPPA" "MSH6.RPPA"
## [9] "TFRC.RPPA" "PREX1.RPPA" "FN1.R2Gn" "CDH2.R2Gn"
## [13] "EEF2.R2Gn" "PRKCA.R2Gn" "CTNNA1.R2Gn" "YWHAB.R2Gn"
## [17] "HSPA1A.R2Gn" "PXN.R2Gn" "RET.R2Gn" "SQSTM1.R2Gn"
## [21] "hsa-mir-1258" "hsa-mir-135b" "hsa-mir-199a-1" "hsa-mir-199a-2"
## [25] "hsa-mir-199b" "hsa-mir-3923" "hsa-mir-3926-2" "hsa-mir-3934"
## [29] "hsa-mir-466" "hsa-mir-483" "hsa-mir-507" "hsa-mir-510"
## [33] "hsa-mir-513a-2" "hsa-mir-605" "hsa-mir-873" "hsa-mir-876"
## [1] "bicluster3"
## [1] "IGFBP2.RPPA" "PEA15.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [5] "CDH2.R2Gn" "ADAR.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [9] "hsa-mir-1197" "hsa-mir-206" "hsa-mir-323b" "hsa-mir-329-1"
## [13] "hsa-mir-329-2" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-380"
## [17] "hsa-mir-411" "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a"
## [21] "hsa-mir-494" "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1"
## [25] "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-518f" "hsa-mir-519a-2"
## [29] "hsa-mir-520a" "hsa-mir-525" "hsa-mir-526b" "hsa-mir-541"
## [33] "hsa-mir-543" "hsa-mir-655" "hsa-mir-656" "hsa-mir-668"
## [1] "bicluster8"
## [1] "ASNS.RPPA" "PTEN.RPPA" "PEA15.RPPA" "ERBB3.R2Gn"
## [5] "FN1.R2Gn" "AKT2.R2Gn" "CDH2.R2Gn" "SERPINE1.R2Gn"
## [9] "PDCD4.R2Gn" "YWHAB.R2Gn" "ERRFI1.R2Gn" "CHGA.R2Gn"
## [13] "hsa-mir-100" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1293"
## [17] "hsa-mir-135b" "hsa-mir-141" "hsa-mir-146b" "hsa-mir-184"
## [21] "hsa-mir-199a-1" "hsa-mir-199a-2" "hsa-mir-199b" "hsa-mir-214"
## [25] "hsa-mir-30c-1" "hsa-mir-3170" "hsa-mir-3173" "hsa-mir-323b"
## [29] "hsa-mir-329-2" "hsa-mir-3678" "hsa-mir-3926-1" "hsa-mir-496"
## [33] "hsa-mir-548s" "hsa-mir-552" "hsa-mir-656" "hsa-mir-668"
## [1] "bicluster4"
## [1] "G6PD.RPPA" "G6PD.R2Gn" "FN1.R2Gn" "ADAR.R2Gn"
## [5] "RPS6.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1248"
## [9] "hsa-mir-1249" "hsa-mir-1270-2" "hsa-mir-135b" "hsa-mir-206"
## [13] "hsa-mir-2114" "hsa-mir-216b" "hsa-mir-217" "hsa-mir-218-1"
## [17] "hsa-mir-323b" "hsa-mir-326" "hsa-mir-329-1" "hsa-mir-329-2"
## [21] "hsa-mir-346" "hsa-mir-34b" "hsa-mir-377" "hsa-mir-380"
## [25] "hsa-mir-3923" "hsa-mir-411" "hsa-mir-429" "hsa-mir-485"
## [29] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-548j" "hsa-mir-627"
## [33] "hsa-mir-642a" "hsa-mir-655" "hsa-mir-663" "hsa-mir-891a"f35_5 = top_x_percent(fabia_35)## [1] "bicluster21"
## [1] "RBM15.RPPA" "FASN.RPPA" "VHL.RPPA" "TFRC.RPPA"
## [5] "hsa-mir-1193" "hsa-mir-124-3" "hsa-mir-1258" "hsa-mir-3191"
## [9] "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-329-2" "hsa-mir-3682"
## [13] "hsa-mir-3909" "hsa-mir-3926-2" "hsa-mir-3934" "hsa-mir-466"
## [17] "hsa-mir-499" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [21] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [25] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [29] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [33] "hsa-mir-544" "hsa-mir-548v" "hsa-mir-581" "hsa-mir-605"
## [1] "bicluster19"
## [1] "INPP4B.RPPA" "FN1.R2Gn" "CTNNB1.R2Gn" "TGM2.R2Gn"
## [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-206"
## [9] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-370"
## [13] "hsa-mir-376a-2" "hsa-mir-380" "hsa-mir-382" "hsa-mir-3926-1"
## [17] "hsa-mir-411" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494"
## [21] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"
## [25] "hsa-mir-518b" "hsa-mir-518c" "hsa-mir-518f" "hsa-mir-519a-2"
## [29] "hsa-mir-520a" "hsa-mir-525" "hsa-mir-526b" "hsa-mir-541"
## [33] "hsa-mir-543" "hsa-mir-656" "hsa-mir-668" "hsa-mir-770"
## [1] "bicluster16"
## [1] "GATA3.RPPA" "PDCD4.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [5] "PRKCA.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn" "RBM3.R2Gn"
## [9] "hsa-mir-1185-1" "hsa-mir-1197" "hsa-mir-1228" "hsa-mir-1245"
## [13] "hsa-mir-1270-1" "hsa-mir-135a-1" "hsa-mir-200b" "hsa-mir-214"
## [17] "hsa-mir-3170" "hsa-mir-335" "hsa-mir-3678" "hsa-mir-3909"
## [21] "hsa-mir-3922" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [25] "hsa-mir-466" "hsa-mir-488" "hsa-mir-493" "hsa-mir-506"
## [29] "hsa-mir-507" "hsa-mir-510" "hsa-mir-541" "hsa-mir-550a-2"
## [33] "hsa-mir-656" "hsa-mir-668" "hsa-mir-876" "hsa-mir-937"
## [1] "bicluster24"
## [1] "G6PD.RPPA" "FASN.RPPA" "TTF1.RPPA" "CDK1.RPPA"
## [5] "VHL.RPPA" "PRDX1.RPPA" "XBP1.RPPA" "GAPDH.RPPA"
## [9] "MSH6.RPPA" "TFRC.RPPA" "PREX1.RPPA" "FASN.R2Gn"
## [13] "CTNNB1.R2Gn" "PRKCA.R2Gn" "TGM2.R2Gn" "PIK3R1.R2Gn"
## [17] "PXN.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1258" "hsa-mir-200a"
## [21] "hsa-mir-329-2" "hsa-mir-380" "hsa-mir-3909" "hsa-mir-3934"
## [25] "hsa-mir-3940" "hsa-mir-466" "hsa-mir-487a" "hsa-mir-507"
## [29] "hsa-mir-510" "hsa-mir-513a-2" "hsa-mir-605" "hsa-mir-653"
## [33] "hsa-mir-656" "hsa-mir-665" "hsa-mir-873" "hsa-mir-876"
## [1] "bicluster9"
## [1] "G6PD.RPPA" "GATA3.RPPA" "FASN.RPPA" "TTF1.RPPA"
## [5] "VHL.RPPA" "G6PD.R2Gn" "FN1.R2Gn" "TGM2.R2Gn"
## [9] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [13] "hsa-mir-1247" "hsa-mir-1269" "hsa-mir-320c-2" "hsa-mir-323"
## [17] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-370" "hsa-mir-376a-2"
## [21] "hsa-mir-377" "hsa-mir-411" "hsa-mir-433" "hsa-mir-485"
## [25] "hsa-mir-487a" "hsa-mir-489" "hsa-mir-494" "hsa-mir-516a-1"
## [29] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-525" "hsa-mir-543"
## [33] "hsa-mir-655" "hsa-mir-656" "hsa-mir-668" "hsa-mir-770"
## [1] "bicluster2"
## [1] "FASN.RPPA" "TTF1.RPPA" "MSH6.RPPA" "MYH11.RPPA"
## [5] "TFRC.RPPA" "PIK3R1.R2Gn" "BCL2L1.R2Gn" "TFRC.R2Gn"
## [9] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1197" "hsa-mir-124-1"
## [13] "hsa-mir-124-2" "hsa-mir-124-3" "hsa-mir-3193" "hsa-mir-329-1"
## [17] "hsa-mir-329-2" "hsa-mir-3687" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [21] "hsa-mir-377" "hsa-mir-380" "hsa-mir-3912" "hsa-mir-411"
## [25] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494" "hsa-mir-541"
## [29] "hsa-mir-655" "hsa-mir-656" "hsa-mir-668" "hsa-mir-670"
## [33] "hsa-mir-770" "hsa-mir-873" "hsa-mir-876" "hsa-mir-937"
## [1] "bicluster13"
## [1] "ASNS.RPPA" "FASN.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn"
## [5] "AKT2.R2Gn" "EEF2.R2Gn" "RPS6.R2Gn" "JUN.R2Gn"
## [9] "COL6A1.R2Gn" "ANXA1.R2Gn" "HSPA1A.R2Gn" "SYP.R2Gn"
## [13] "hsa-mir-1193" "hsa-mir-124-2" "hsa-mir-124-3" "hsa-mir-146b"
## [17] "hsa-mir-202" "hsa-mir-31" "hsa-mir-3682" "hsa-mir-412"
## [21] "hsa-mir-466" "hsa-mir-490" "hsa-mir-510" "hsa-mir-511-1"
## [25] "hsa-mir-516a-2" "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-518f"
## [29] "hsa-mir-519a-2" "hsa-mir-544" "hsa-mir-552" "hsa-mir-582"
## [33] "hsa-mir-605" "hsa-mir-653" "hsa-mir-656" "hsa-mir-891a"
## [1] "bicluster29"
## [1] "PEA15.RPPA" "TFRC.RPPA" "PREX1.RPPA" "ERBB3.R2Gn"
## [5] "CDH2.R2Gn" "PEA15.R2Gn" "ITGA2.R2Gn" "ADAR.R2Gn"
## [9] "CTNNB1.R2Gn" "PRKCA.R2Gn" "PIK3R2.R2Gn" "HSPA1A.R2Gn"
## [13] "ERRFI1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [17] "hsa-mir-1258" "hsa-mir-135a-1" "hsa-mir-139" "hsa-mir-196b"
## [21] "hsa-mir-206" "hsa-mir-3166" "hsa-mir-3170" "hsa-mir-3199-1"
## [25] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-335" "hsa-mir-3678"
## [29] "hsa-mir-433" "hsa-mir-487a" "hsa-mir-488" "hsa-mir-517a"
## [33] "hsa-mir-541" "hsa-mir-656" "hsa-mir-668" "hsa-mir-876"
## [1] "bicluster10"
## [1] "ATM.RPPA" "FASN.RPPA" "TSC1.RPPA" "GAPDH.RPPA"
## [5] "TFRC.RPPA" "ERBB3.R2Gn" "CDH2.R2Gn" "XRCC5.R2Gn"
## [9] "CTNNB1.R2Gn" "PIK3R1.R2Gn" "GAPDH.R2Gn" "TFRC.R2Gn"
## [13] "PARP1.R2Gn" "hsa-mir-1269" "hsa-mir-2114" "hsa-mir-320c-2"
## [17] "hsa-mir-3922" "hsa-mir-3923" "hsa-mir-3926-2" "hsa-mir-466"
## [21] "hsa-mir-490" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [25] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [29] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [33] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-585"
## [1] "bicluster7"
## [1] "GATA3.RPPA" "ATM.RPPA" "EGFR.RPPA" "TSC1.RPPA"
## [5] "GAPDH.RPPA" "TFRC.RPPA" "ERBB3.R2Gn" "FN1.R2Gn"
## [9] "CCND1.R2Gn" "GAPDH.R2Gn" "SYP.R2Gn" "PARP1.R2Gn"
## [13] "hsa-mir-1185-1" "hsa-mir-1226" "hsa-mir-1269" "hsa-mir-1293"
## [17] "hsa-mir-184" "hsa-mir-2114" "hsa-mir-30c-1" "hsa-mir-3199-1"
## [21] "hsa-mir-320c-2" "hsa-mir-3923" "hsa-mir-429" "hsa-mir-506"
## [25] "hsa-mir-507" "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-510"
## [29] "hsa-mir-513a-2" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [33] "hsa-mir-514b" "hsa-mir-548v" "hsa-mir-582" "hsa-mir-937"
## [1] "bicluster34"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "FASN.RPPA" "PDCD4.RPPA"
## [5] "MSH6.RPPA" "MSH2.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [9] "RPS6KA1.R2Gn" "ADAR.R2Gn" "EEF2.R2Gn" "CTNNB1.R2Gn"
## [13] "GAPDH.R2Gn" "hsa-mir-124-1" "hsa-mir-124-3" "hsa-mir-1248"
## [17] "hsa-mir-1251" "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-1270-2"
## [21] "hsa-mir-135b" "hsa-mir-187" "hsa-mir-200b" "hsa-mir-218-2"
## [25] "hsa-mir-296" "hsa-mir-3130-1" "hsa-mir-3166" "hsa-mir-3687"
## [29] "hsa-mir-3690" "hsa-mir-411" "hsa-mir-510" "hsa-mir-511-2"
## [33] "hsa-mir-552" "hsa-mir-605" "hsa-mir-887" "hsa-mir-940"
## [1] "bicluster31"
## [1] "G6PD.RPPA" "ATM.RPPA" "EGFR.RPPA" "GAPDH.RPPA"
## [5] "MYH11.RPPA" "ERBB3.R2Gn" "CDKN1A.R2Gn" "YWHAE.R2Gn"
## [9] "RPS6.R2Gn" "PRDX1.R2Gn" "GAPDH.R2Gn" "HSPA1A.R2Gn"
## [13] "RET.R2Gn" "hsa-mir-105-2" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [17] "hsa-mir-1193" "hsa-mir-1197" "hsa-mir-1249" "hsa-mir-1293"
## [21] "hsa-mir-200b" "hsa-mir-329-2" "hsa-mir-33b" "hsa-mir-376a-1"
## [25] "hsa-mir-3922" "hsa-mir-433" "hsa-mir-490" "hsa-mir-496"
## [29] "hsa-mir-516a-1" "hsa-mir-544" "hsa-mir-585" "hsa-mir-605"
## [33] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-891a"
## [1] "bicluster27"
## [1] "GATA3.RPPA" "GAPDH.RPPA" "ERBB3.R2Gn" "FN1.R2Gn"
## [5] "CDH2.R2Gn" "SERPINE1.R2Gn" "CTNNB1.R2Gn" "TGM2.R2Gn"
## [9] "PRDX1.R2Gn" "NDRG1.R2Gn" "HSPA1A.R2Gn" "SYP.R2Gn"
## [13] "hsa-mir-1255a" "hsa-mir-1270-1" "hsa-mir-133b" "hsa-mir-184"
## [17] "hsa-mir-205" "hsa-mir-3928" "hsa-mir-3934" "hsa-mir-483"
## [21] "hsa-mir-499" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [25] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [29] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514b"
## [33] "hsa-mir-516a-1" "hsa-mir-517a" "hsa-mir-525" "hsa-mir-767"
## [1] "bicluster15"
## [1] "G6PD.RPPA" "PTEN.RPPA" "INPP4B.RPPA" "PDCD4.RPPA"
## [5] "TTF1.RPPA" "VHL.RPPA" "PRDX1.RPPA" "XBP1.RPPA"
## [9] "TGM2.R2Gn" "ANXA1.R2Gn" "SQSTM1.R2Gn" "hsa-mir-122"
## [13] "hsa-mir-1258" "hsa-mir-153-1" "hsa-mir-2114" "hsa-mir-218-1"
## [17] "hsa-mir-3173" "hsa-mir-320c-1" "hsa-mir-320c-2" "hsa-mir-3610"
## [21] "hsa-mir-3940" "hsa-mir-466" "hsa-mir-489" "hsa-mir-507"
## [25] "hsa-mir-513a-1" "hsa-mir-551b" "hsa-mir-552" "hsa-mir-570"
## [29] "hsa-mir-653" "hsa-mir-656" "hsa-mir-665" "hsa-mir-7-2"
## [33] "hsa-mir-765" "hsa-mir-770" "hsa-mir-876" "hsa-mir-95"
## [1] "bicluster25"
## [1] "IGFBP2.RPPA" "ATM.RPPA" "AR.RPPA" "GAPDH.RPPA"
## [5] "IGFBP2.R2Gn" "CTNNB1.R2Gn" "PRRT2.R2Gn" "GAPDH.R2Gn"
## [9] "ANXA1.R2Gn" "ERRFI1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1269"
## [13] "hsa-mir-183" "hsa-mir-190b" "hsa-mir-196b" "hsa-mir-205"
## [17] "hsa-mir-301b" "hsa-mir-3173" "hsa-mir-3187" "hsa-mir-320c-1"
## [21] "hsa-mir-329-2" "hsa-mir-3610" "hsa-mir-3620" "hsa-mir-3940"
## [25] "hsa-mir-466" "hsa-mir-483" "hsa-mir-517a" "hsa-mir-548q"
## [29] "hsa-mir-580" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [33] "hsa-mir-873" "hsa-mir-876" "hsa-mir-891a" "hsa-mir-96"
## [1] "bicluster22"
## [1] "GATA3.RPPA" "ATM.RPPA" "AR.RPPA" "ERBB3.R2Gn"
## [5] "PEA15.R2Gn" "ADAR.R2Gn" "CTNNB1.R2Gn" "SHC1.R2Gn"
## [9] "TGM2.R2Gn" "GAPDH.R2Gn" "hsa-mir-105-1" "hsa-mir-133b"
## [13] "hsa-mir-135b" "hsa-mir-206" "hsa-mir-3166" "hsa-mir-320c-2"
## [17] "hsa-mir-3678" "hsa-mir-3922" "hsa-mir-3926-2" "hsa-mir-429"
## [21] "hsa-mir-509-2" "hsa-mir-510" "hsa-mir-516a-1" "hsa-mir-516a-2"
## [25] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-518f"
## [29] "hsa-mir-519a-2" "hsa-mir-520a" "hsa-mir-525" "hsa-mir-548s"
## [33] "hsa-mir-579" "hsa-mir-605" "hsa-mir-7-2" "hsa-mir-767"
## [1] "bicluster1"
## [1] "BRCA2.RPPA" "FASN.RPPA" "ACVRL1.RPPA" "GAPDH.RPPA"
## [5] "ERBB3.R2Gn" "FN1.R2Gn" "FASN.R2Gn" "FOXO3.R2Gn"
## [9] "GAPDH.R2Gn" "hsa-mir-105-1" "hsa-mir-106a" "hsa-mir-124-3"
## [13] "hsa-mir-134" "hsa-mir-135a-2" "hsa-mir-144" "hsa-mir-190"
## [17] "hsa-mir-26a-1" "hsa-mir-320c-1" "hsa-mir-323b" "hsa-mir-329-1"
## [21] "hsa-mir-329-2" "hsa-mir-34b" "hsa-mir-376a-2" "hsa-mir-380"
## [25] "hsa-mir-3912" "hsa-mir-411" "hsa-mir-433" "hsa-mir-451"
## [29] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-511-1" "hsa-mir-517a"
## [33] "hsa-mir-541" "hsa-mir-580" "hsa-mir-655" "hsa-mir-770"
## [1] "bicluster28"
## [1] "TFRC.RPPA" "ERBB3.R2Gn" "GATA3.R2Gn" "CCND1.R2Gn"
## [5] "XBP1.R2Gn" "GAPDH.R2Gn" "TFRC.R2Gn" "HSPA1A.R2Gn"
## [9] "ERRFI1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1193" "hsa-mir-1249"
## [13] "hsa-mir-1269" "hsa-mir-135a-1" "hsa-mir-138-1" "hsa-mir-138-2"
## [17] "hsa-mir-187" "hsa-mir-196a-2" "hsa-mir-205" "hsa-mir-216b"
## [21] "hsa-mir-3130-1" "hsa-mir-346" "hsa-mir-34b" "hsa-mir-376a-2"
## [25] "hsa-mir-380" "hsa-mir-411" "hsa-mir-432" "hsa-mir-433"
## [29] "hsa-mir-485" "hsa-mir-488" "hsa-mir-490" "hsa-mir-541"
## [33] "hsa-mir-543" "hsa-mir-615" "hsa-mir-636" "hsa-mir-9-3"
## [1] "bicluster12"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "TTF1.RPPA" "GAPDH.RPPA"
## [5] "MSH6.RPPA" "TFRC.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [9] "FN1.R2Gn" "STMN1.R2Gn" "SNAI2.R2Gn" "SQSTM1.R2Gn"
## [13] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1262" "hsa-mir-1269"
## [17] "hsa-mir-129-2" "hsa-mir-200a" "hsa-mir-2114" "hsa-mir-29b-1"
## [21] "hsa-mir-29b-2" "hsa-mir-29c" "hsa-mir-31" "hsa-mir-320c-2"
## [25] "hsa-mir-34b" "hsa-mir-3923" "hsa-mir-411" "hsa-mir-429"
## [29] "hsa-mir-487a" "hsa-mir-510" "hsa-mir-513b" "hsa-mir-548q"
## [33] "hsa-mir-655" "hsa-mir-656" "hsa-mir-891a" "hsa-mir-937"
## [1] "bicluster20"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [5] "FN1.R2Gn" "EIF4G1.R2Gn" "ADAR.R2Gn" "RPS6.R2Gn"
## [9] "ANLN.R2Gn" "STMN1.R2Gn" "CDK1.R2Gn" "CTNNA1.R2Gn"
## [13] "CAV1.R2Gn" "TYMS.R2Gn" "TUBA1B.R2Gn" "FOXM1.R2Gn"
## [17] "COL6A1.R2Gn" "EZH2.R2Gn" "CDKN2A.R2Gn" "hsa-mir-1245"
## [21] "hsa-mir-1247" "hsa-mir-135b" "hsa-mir-138-1" "hsa-mir-138-2"
## [25] "hsa-mir-202" "hsa-mir-29c" "hsa-mir-3144" "hsa-mir-3191"
## [29] "hsa-mir-372" "hsa-mir-3923" "hsa-mir-3926-1" "hsa-mir-3926-2"
## [33] "hsa-mir-499" "hsa-mir-507" "hsa-mir-876" "hsa-mir-940"
## [1] "bicluster11"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "EGFR.RPPA" "MSH6.RPPA"
## [5] "G6PD.R2Gn" "ERBB3.R2Gn" "FN1.R2Gn" "TGM2.R2Gn"
## [9] "CCND1.R2Gn" "COL6A1.R2Gn" "HSPA1A.R2Gn" "hsa-mir-1185-1"
## [13] "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-206"
## [17] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-376a-2" "hsa-mir-377"
## [21] "hsa-mir-380" "hsa-mir-411" "hsa-mir-466" "hsa-mir-485"
## [25] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-516a-1" "hsa-mir-516a-2"
## [29] "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-525" "hsa-mir-543"
## [33] "hsa-mir-655" "hsa-mir-656" "hsa-mir-876" "hsa-mir-889"
## [1] "bicluster14"
## [1] "G6PD.RPPA" "FASN.RPPA" "NF2.RPPA" "ERBB3.R2Gn"
## [5] "FN1.R2Gn" "FASN.R2Gn" "CTNNB1.R2Gn" "FOXO3.R2Gn"
## [9] "BCL2.R2Gn" "CCND1.R2Gn" "XBP1.R2Gn" "GAPDH.R2Gn"
## [13] "COL6A1.R2Gn" "HSPA1A.R2Gn" "SYP.R2Gn" "hsa-mir-105-2"
## [17] "hsa-mir-1269" "hsa-mir-200a" "hsa-mir-200b" "hsa-mir-26a-1"
## [21] "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-329-1" "hsa-mir-3690"
## [25] "hsa-mir-3926-1" "hsa-mir-433" "hsa-mir-488" "hsa-mir-511-2"
## [29] "hsa-mir-516a-1" "hsa-mir-517a" "hsa-mir-520a" "hsa-mir-526b"
## [33] "hsa-mir-548q" "hsa-mir-585" "hsa-mir-885" "hsa-mir-9-3"
## [1] "bicluster17"
## [1] "PEA15.RPPA" "TSC1.RPPA" "TTF1.RPPA" "VHL.RPPA"
## [5] "ERBB3.R2Gn" "PEA15.R2Gn" "ADAR.R2Gn" "SERPINE1.R2Gn"
## [9] "CTNNB1.R2Gn" "SHC1.R2Gn" "CCND1.R2Gn" "GAPDH.R2Gn"
## [13] "hsa-mir-1249" "hsa-mir-1255a" "hsa-mir-1292" "hsa-mir-138-2"
## [17] "hsa-mir-218-1" "hsa-mir-3190" "hsa-mir-506" "hsa-mir-507"
## [21] "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3"
## [25] "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"
## [29] "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [33] "hsa-mir-514b" "hsa-mir-659" "hsa-mir-760" "hsa-mir-876"
## [1] "bicluster33"
## [1] "IGFBP2.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn" "PIK3R1.R2Gn"
## [5] "HSPA1A.R2Gn" "ERRFI1.R2Gn" "hsa-mir-1185-2" "hsa-mir-1247"
## [9] "hsa-mir-1249" "hsa-mir-1269" "hsa-mir-1292" "hsa-mir-138-2"
## [13] "hsa-mir-196a-2" "hsa-mir-216b" "hsa-mir-3170" "hsa-mir-3173"
## [17] "hsa-mir-3193" "hsa-mir-329-2" "hsa-mir-346" "hsa-mir-3678"
## [21] "hsa-mir-383" "hsa-mir-487a" "hsa-mir-504" "hsa-mir-510"
## [25] "hsa-mir-516a-2" "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-519a-2"
## [29] "hsa-mir-520a" "hsa-mir-526b" "hsa-mir-541" "hsa-mir-615"
## [33] "hsa-mir-656" "hsa-mir-665" "hsa-mir-760" "hsa-mir-876"
## [1] "bicluster5"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "ASNS.RPPA" "RBM15.RPPA"
## [5] "PEA15.RPPA" "ATM.RPPA" "EGFR.RPPA" "TSC1.RPPA"
## [9] "GAPDH.RPPA" "NF2.RPPA" "CDH2.R2Gn" "CDKN1A.R2Gn"
## [13] "PEA15.R2Gn" "ADAR.R2Gn" "SHC1.R2Gn" "GAPDH.R2Gn"
## [17] "SYP.R2Gn" "hsa-mir-1255a" "hsa-mir-1305" "hsa-mir-184"
## [21] "hsa-mir-200a" "hsa-mir-200b" "hsa-mir-206" "hsa-mir-218-1"
## [25] "hsa-mir-296" "hsa-mir-301b" "hsa-mir-3610" "hsa-mir-3687"
## [29] "hsa-mir-3909" "hsa-mir-3917" "hsa-mir-3926-1" "hsa-mir-3940"
## [33] "hsa-mir-429" "hsa-mir-548q" "hsa-mir-552" "hsa-mir-580"
## [1] "bicluster18"
## [1] "GATA3.RPPA" "PEA15.RPPA" "MAPK14.R2Gn" "ERBB3.R2Gn"
## [5] "CDH2.R2Gn" "GATA3.R2Gn" "EIF4G1.R2Gn" "ITGA2.R2Gn"
## [9] "ADAR.R2Gn" "EEF2.R2Gn" "CTNNB1.R2Gn" "RPS6.R2Gn"
## [13] "TGM2.R2Gn" "GAPDH.R2Gn" "NDRG1.R2Gn" "BID.R2Gn"
## [17] "TFRC.R2Gn" "ERRFI1.R2Gn" "PARP1.R2Gn" "TFF1.R2Gn"
## [21] "hsa-mir-124-3" "hsa-mir-1269" "hsa-mir-3130-1" "hsa-mir-3170"
## [25] "hsa-mir-320c-2" "hsa-mir-383" "hsa-mir-3922" "hsa-mir-452"
## [29] "hsa-mir-499" "hsa-mir-507" "hsa-mir-510" "hsa-mir-513a-1"
## [33] "hsa-mir-513a-2" "hsa-mir-514b" "hsa-mir-516a-1" "hsa-mir-518b"
## [1] "bicluster26"
## [1] "G6PD.RPPA" "EGFR.RPPA" "TFRC.RPPA" "ERBB3.R2Gn"
## [5] "FN1.R2Gn" "SERPINE1.R2Gn" "JUN.R2Gn" "PIK3R1.R2Gn"
## [9] "TFRC.R2Gn" "ERRFI1.R2Gn" "hsa-mir-1185-1" "hsa-mir-124-1"
## [13] "hsa-mir-190b" "hsa-mir-2114" "hsa-mir-216b" "hsa-mir-217"
## [17] "hsa-mir-224" "hsa-mir-296" "hsa-mir-3130-1" "hsa-mir-3170"
## [21] "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-3662" "hsa-mir-3923"
## [25] "hsa-mir-452" "hsa-mir-487a" "hsa-mir-488" "hsa-mir-494"
## [29] "hsa-mir-499" "hsa-mir-516a-1" "hsa-mir-548q" "hsa-mir-548s"
## [33] "hsa-mir-577" "hsa-mir-580" "hsa-mir-656" "hsa-mir-873"
## [1] "bicluster3"
## [1] "IGFBP2.RPPA" "PDCD4.RPPA" "ERBB3.R2Gn" "FN1.R2Gn"
## [5] "ADAR.R2Gn" "SERPINE1.R2Gn" "PIK3R1.R2Gn" "MYH9.R2Gn"
## [9] "SYP.R2Gn" "PARP1.R2Gn" "hsa-mir-1248" "hsa-mir-129-2"
## [13] "hsa-mir-1292" "hsa-mir-1304" "hsa-mir-182" "hsa-mir-183"
## [17] "hsa-mir-187" "hsa-mir-216b" "hsa-mir-34b" "hsa-mir-3678"
## [21] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"
## [25] "hsa-mir-518b" "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"
## [29] "hsa-mir-525" "hsa-mir-526b" "hsa-mir-570" "hsa-mir-636"
## [33] "hsa-mir-7-2" "hsa-mir-760" "hsa-mir-765" "hsa-mir-96"
## [1] "bicluster23"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "PTEN.RPPA" "EGFR.RPPA"
## [5] "FASN.RPPA" "IRS1.RPPA" "ERCC1.RPPA" "AKT1.R2Gn"
## [9] "ADAR.R2Gn" "EGFR.R2Gn" "SERPINE1.R2Gn" "SHC1.R2Gn"
## [13] "PIK3R1.R2Gn" "TUBA1B.R2Gn" "PXN.R2Gn" "SYP.R2Gn"
## [17] "ANXA7.R2Gn" "hsa-mir-1251" "hsa-mir-1269" "hsa-mir-129-1"
## [21] "hsa-mir-129-2" "hsa-mir-135a-1" "hsa-mir-138-2" "hsa-mir-184"
## [25] "hsa-mir-187" "hsa-mir-196a-2" "hsa-mir-2277" "hsa-mir-30c-1"
## [29] "hsa-mir-3651" "hsa-mir-3687" "hsa-mir-570" "hsa-mir-605"
## [33] "hsa-mir-659" "hsa-mir-7-3" "hsa-mir-767" "hsa-mir-9-3"
## [1] "bicluster4"
## [1] "IGFBP2.RPPA" "FASN.RPPA" "MSH6.RPPA" "PREX1.RPPA"
## [5] "ERBB3.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn" "FASN.R2Gn"
## [9] "CCND1.R2Gn" "GAPDH.R2Gn" "PIK3R2.R2Gn" "ERRFI1.R2Gn"
## [13] "SYP.R2Gn" "SNAI2.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1248"
## [17] "hsa-mir-1249" "hsa-mir-135b" "hsa-mir-200b" "hsa-mir-2114"
## [21] "hsa-mir-218-1" "hsa-mir-29c" "hsa-mir-301b" "hsa-mir-31"
## [25] "hsa-mir-34b" "hsa-mir-3614" "hsa-mir-3923" "hsa-mir-429"
## [29] "hsa-mir-489" "hsa-mir-511-1" "hsa-mir-511-2" "hsa-mir-516a-1"
## [33] "hsa-mir-516a-2" "hsa-mir-605" "hsa-mir-627" "hsa-mir-642a"
## [1] "bicluster8"
## [1] "IGFBP2.RPPA" "PTEN.RPPA" "GATA3.RPPA" "PEA15.RPPA"
## [5] "ATM.RPPA" "FASN.RPPA" "MYH11.RPPA" "TFRC.RPPA"
## [9] "KDR.R2Gn" "ERBB3.R2Gn" "FN1.R2Gn" "AKT2.R2Gn"
## [13] "CDH2.R2Gn" "EEF2.R2Gn" "SERPINE1.R2Gn" "PDK1.R2Gn"
## [17] "HSPA1A.R2Gn" "ERRFI1.R2Gn" "hsa-mir-122" "hsa-mir-1270-1"
## [21] "hsa-mir-135b" "hsa-mir-184" "hsa-mir-188" "hsa-mir-194-1"
## [25] "hsa-mir-194-2" "hsa-mir-210" "hsa-mir-30c-1" "hsa-mir-3170"
## [29] "hsa-mir-3678" "hsa-mir-3909" "hsa-mir-3926-2" "hsa-mir-519a-2"
## [33] "hsa-mir-548s" "hsa-mir-639" "hsa-mir-765" "hsa-mir-939"
## [1] "bicluster6"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "RBM15.RPPA" "GATA3.RPPA"
## [5] "ATM.RPPA" "EGFR.RPPA" "PRDX1.RPPA" "MSH6.RPPA"
## [9] "G6PD.R2Gn" "KDR.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn"
## [13] "CDH2.R2Gn" "RB1.R2Gn" "SERPINE1.R2Gn" "NDRG1.R2Gn"
## [17] "HSPA1A.R2Gn" "SYP.R2Gn" "hsa-mir-1228" "hsa-mir-1249"
## [21] "hsa-mir-135b" "hsa-mir-137" "hsa-mir-138-1" "hsa-mir-138-2"
## [25] "hsa-mir-216a" "hsa-mir-30c-1" "hsa-mir-3144" "hsa-mir-3199-1"
## [29] "hsa-mir-3620" "hsa-mir-372" "hsa-mir-3926-1" "hsa-mir-585"
## [33] "hsa-mir-760" "hsa-mir-765" "hsa-mir-873" "hsa-mir-876"
## [1] "bicluster35"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "GATA3.RPPA" "PDCD4.RPPA"
## [5] "AR.RPPA" "GAPDH.RPPA" "IGFBP2.R2Gn" "EEF2.R2Gn"
## [9] "PRKCA.R2Gn" "GAPDH.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn"
## [13] "hsa-mir-105-1" "hsa-mir-1229" "hsa-mir-1255a" "hsa-mir-204"
## [17] "hsa-mir-2114" "hsa-mir-216a" "hsa-mir-3191" "hsa-mir-3620"
## [21] "hsa-mir-3928" "hsa-mir-450a-2" "hsa-mir-455" "hsa-mir-488"
## [25] "hsa-mir-507" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-514b"
## [29] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-526b" "hsa-mir-545"
## [33] "hsa-mir-552" "hsa-mir-760" "hsa-mir-891a" "hsa-mir-937"
## [1] "bicluster32"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "DIRAS3.R2Gn" "ERBB3.R2Gn"
## [5] "IGFBP2.R2Gn" "CDKN1A.R2Gn" "GATA3.R2Gn" "EEF2.R2Gn"
## [9] "SERPINE1.R2Gn" "CTNNB1.R2Gn" "RPS6.R2Gn" "PRDX1.R2Gn"
## [13] "NRG1.R2Gn" "HSPA1A.R2Gn" "CDKN2A.R2Gn" "IDH3A.R2Gn"
## [17] "hsa-mir-105-1" "hsa-mir-105-2" "hsa-mir-122" "hsa-mir-1226"
## [21] "hsa-mir-1249" "hsa-mir-1269" "hsa-mir-141" "hsa-mir-144"
## [25] "hsa-mir-182" "hsa-mir-183" "hsa-mir-506" "hsa-mir-509-3"
## [29] "hsa-mir-510" "hsa-mir-518c" "hsa-mir-525" "hsa-mir-570"
## [33] "hsa-mir-580" "hsa-mir-663" "hsa-mir-7-2" "hsa-mir-760"
## [1] "bicluster30"
## [1] "G6PD.RPPA" "RBM15.RPPA" "GATA3.RPPA" "EGFR.RPPA"
## [5] "INPP4B.RPPA" "ACVRL1.RPPA" "PRDX1.RPPA" "TFRC.RPPA"
## [9] "IGFBP2.R2Gn" "ADAR.R2Gn" "CTNNB1.R2Gn" "RPS6.R2Gn"
## [13] "PRKCA.R2Gn" "SHC1.R2Gn" "STAT5A.R2Gn" "ERRFI1.R2Gn"
## [17] "SYP.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1245" "hsa-mir-1270-1"
## [21] "hsa-mir-1270-2" "hsa-mir-1274b" "hsa-mir-137" "hsa-mir-138-1"
## [25] "hsa-mir-138-2" "hsa-mir-153-1" "hsa-mir-204" "hsa-mir-206"
## [29] "hsa-mir-3610" "hsa-mir-3678" "hsa-mir-3917" "hsa-mir-499"
## [33] "hsa-mir-519a-2" "hsa-mir-551b" "hsa-mir-570" "hsa-mir-618"f43_5 = top_x_percent(fabia_43)## [1] "bicluster41"
## [1] "G6PD.RPPA" "ASNS.RPPA" "RBM15.RPPA" "PTEN.RPPA"
## [5] "ATM.RPPA" "FASN.RPPA" "INPP4B.RPPA" "PDCD4.RPPA"
## [9] "CDK1.RPPA" "VHL.RPPA" "PRDX1.RPPA" "EEF2.R2Gn"
## [13] "TGM2.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1197"
## [17] "hsa-mir-1269" "hsa-mir-137" "hsa-mir-146a" "hsa-mir-200b"
## [21] "hsa-mir-218-1" "hsa-mir-329-1" "hsa-mir-376a-2" "hsa-mir-377"
## [25] "hsa-mir-380" "hsa-mir-3926-1" "hsa-mir-3940" "hsa-mir-487a"
## [29] "hsa-mir-489" "hsa-mir-516a-1" "hsa-mir-517a" "hsa-mir-552"
## [33] "hsa-mir-607" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [1] "bicluster21"
## [1] "FASN.RPPA" "TFRC.RPPA" "CDH2.R2Gn" "ADAR.R2Gn"
## [5] "hsa-mir-1193" "hsa-mir-124-1" "hsa-mir-124-3" "hsa-mir-153-1"
## [9] "hsa-mir-153-2" "hsa-mir-3199-1" "hsa-mir-3682" "hsa-mir-383"
## [13] "hsa-mir-3909" "hsa-mir-3926-2" "hsa-mir-3934" "hsa-mir-499"
## [17] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [21] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-514-1" "hsa-mir-514-2"
## [29] "hsa-mir-514-3" "hsa-mir-516a-1" "hsa-mir-525" "hsa-mir-548s"
## [33] "hsa-mir-550a-2" "hsa-mir-580" "hsa-mir-581" "hsa-mir-605"
## [1] "bicluster19"
## [1] "ASNS.RPPA" "INPP4B.RPPA" "MYH11.RPPA" "ERBB3.R2Gn"
## [5] "FN1.R2Gn" "CTNNB1.R2Gn" "SHC1.R2Gn" "PARK7.R2Gn"
## [9] "TGM2.R2Gn" "HSPA1A.R2Gn" "hsa-mir-1293" "hsa-mir-205"
## [13] "hsa-mir-206" "hsa-mir-30c-1" "hsa-mir-329-1" "hsa-mir-3682"
## [17] "hsa-mir-380" "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-487a"
## [21] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"
## [25] "hsa-mir-518b" "hsa-mir-518c" "hsa-mir-518f" "hsa-mir-519a-1"
## [29] "hsa-mir-519a-2" "hsa-mir-520a" "hsa-mir-525" "hsa-mir-526b"
## [33] "hsa-mir-541" "hsa-mir-577" "hsa-mir-656" "hsa-mir-668"
## [1] "bicluster38"
## [1] "G6PD.RPPA" "FASN.RPPA" "PDCD4.RPPA" "AR.RPPA"
## [5] "GAPDH.RPPA" "MSH6.RPPA" "KDR.R2Gn" "ERBB3.R2Gn"
## [9] "IGFBP2.R2Gn" "FASN.R2Gn" "PRKCA.R2Gn" "GAPDH.R2Gn"
## [13] "COL6A1.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn" "hsa-mir-1179"
## [17] "hsa-mir-1247" "hsa-mir-135b" "hsa-mir-187" "hsa-mir-200a"
## [21] "hsa-mir-2114" "hsa-mir-216b" "hsa-mir-224" "hsa-mir-3130-1"
## [25] "hsa-mir-3170" "hsa-mir-3934" "hsa-mir-452" "hsa-mir-488"
## [29] "hsa-mir-517a" "hsa-mir-519a-2" "hsa-mir-551b" "hsa-mir-577"
## [33] "hsa-mir-605" "hsa-mir-636" "hsa-mir-876" "hsa-mir-939"
## [1] "bicluster16"
## [1] "GATA3.RPPA" "PDCD4.RPPA" "PREX1.RPPA" "ERBB3.R2Gn"
## [5] "IGFBP2.R2Gn" "PRKCA.R2Gn" "GAPDH.R2Gn" "HSPA1A.R2Gn"
## [9] "ERRFI1.R2Gn" "RBM3.R2Gn" "hsa-mir-105-2" "hsa-mir-1197"
## [13] "hsa-mir-1224" "hsa-mir-135a-1" "hsa-mir-194-2" "hsa-mir-200b"
## [17] "hsa-mir-215" "hsa-mir-335" "hsa-mir-3678" "hsa-mir-3909"
## [21] "hsa-mir-3922" "hsa-mir-431" "hsa-mir-4326" "hsa-mir-466"
## [25] "hsa-mir-488" "hsa-mir-504" "hsa-mir-541" "hsa-mir-550a-2"
## [29] "hsa-mir-585" "hsa-mir-607" "hsa-mir-656" "hsa-mir-7-2"
## [33] "hsa-mir-7-3" "hsa-mir-765" "hsa-mir-767" "hsa-mir-876"
## [1] "bicluster34"
## [1] "PDCD4.RPPA" "MSH6.RPPA" "TFRC.RPPA" "MSH2.RPPA"
## [5] "ERBB3.R2Gn" "RPS6KA1.R2Gn" "ADAR.R2Gn" "EEF2.R2Gn"
## [9] "CTNNB1.R2Gn" "SHC1.R2Gn" "CHGA.R2Gn" "hsa-mir-106a"
## [13] "hsa-mir-124-1" "hsa-mir-124-2" "hsa-mir-124-3" "hsa-mir-1248"
## [17] "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1274b" "hsa-mir-141"
## [21] "hsa-mir-200b" "hsa-mir-218-2" "hsa-mir-296" "hsa-mir-3130-1"
## [25] "hsa-mir-320c-2" "hsa-mir-34b" "hsa-mir-3648" "hsa-mir-3676"
## [29] "hsa-mir-3687" "hsa-mir-411" "hsa-mir-511-2" "hsa-mir-518b"
## [33] "hsa-mir-552" "hsa-mir-605" "hsa-mir-887" "hsa-mir-940"
## [1] "bicluster42"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "PEA15.RPPA" "EGFR.RPPA"
## [5] "TSC1.RPPA" "PDCD4.RPPA" "TFRC.RPPA" "IGFBP2.R2Gn"
## [9] "CDH2.R2Gn" "CTNNA1.R2Gn" "NDRG1.R2Gn" "SYP.R2Gn"
## [13] "RPTOR.R2Gn" "hsa-mir-1255a" "hsa-mir-1269" "hsa-mir-1270-1"
## [17] "hsa-mir-153-1" "hsa-mir-153-2" "hsa-mir-187" "hsa-mir-29a"
## [21] "hsa-mir-3166" "hsa-mir-3173" "hsa-mir-320c-2" "hsa-mir-346"
## [25] "hsa-mir-3651" "hsa-mir-3662" "hsa-mir-3676" "hsa-mir-552"
## [29] "hsa-mir-570" "hsa-mir-642a" "hsa-mir-766" "hsa-mir-876"
## [33] "hsa-mir-885" "hsa-mir-935" "hsa-mir-937" "hsa-mir-95"
## [1] "bicluster22"
## [1] "GATA3.RPPA" "ATM.RPPA" "AR.RPPA" "ERBB3.R2Gn"
## [5] "PEA15.R2Gn" "ADAR.R2Gn" "EEF2.R2Gn" "SERPINE1.R2Gn"
## [9] "SHC1.R2Gn" "hsa-mir-105-1" "hsa-mir-105-2" "hsa-mir-133b"
## [13] "hsa-mir-135b" "hsa-mir-137" "hsa-mir-200a" "hsa-mir-206"
## [17] "hsa-mir-3166" "hsa-mir-3191" "hsa-mir-3678" "hsa-mir-3922"
## [21] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"
## [25] "hsa-mir-518b" "hsa-mir-518f" "hsa-mir-519a-2" "hsa-mir-520a"
## [29] "hsa-mir-525" "hsa-mir-548s" "hsa-mir-579" "hsa-mir-605"
## [33] "hsa-mir-7-2" "hsa-mir-708" "hsa-mir-767" "hsa-mir-891a"
## [1] "bicluster25"
## [1] "IGFBP2.RPPA" "PTEN.RPPA" "AR.RPPA" "GAPDH.RPPA"
## [5] "IGFBP2.R2Gn" "ITGA2.R2Gn" "CTNNB1.R2Gn" "PRRT2.R2Gn"
## [9] "BCL2L1.R2Gn" "GAPDH.R2Gn" "ERRFI1.R2Gn" "hsa-mir-1262"
## [13] "hsa-mir-190b" "hsa-mir-196b" "hsa-mir-296" "hsa-mir-301b"
## [17] "hsa-mir-3187" "hsa-mir-320c-1" "hsa-mir-329-2" "hsa-mir-3610"
## [21] "hsa-mir-3620" "hsa-mir-3928" "hsa-mir-3940" "hsa-mir-483"
## [25] "hsa-mir-503" "hsa-mir-516a-1" "hsa-mir-517a" "hsa-mir-518c"
## [29] "hsa-mir-548q" "hsa-mir-580" "hsa-mir-7-3" "hsa-mir-765"
## [33] "hsa-mir-873" "hsa-mir-876" "hsa-mir-891a" "hsa-mir-937"
## [1] "bicluster10"
## [1] "EGFR.RPPA" "FASN.RPPA" "TSC1.RPPA" "GAPDH.RPPA"
## [5] "TFRC.RPPA" "CDH2.R2Gn" "FASN.R2Gn" "EEF2.R2Gn"
## [9] "CTNNB1.R2Gn" "PIK3R1.R2Gn" "GAPDH.R2Gn" "TUBA1B.R2Gn"
## [13] "TFRC.R2Gn" "hsa-mir-1228" "hsa-mir-1269" "hsa-mir-129-2"
## [17] "hsa-mir-3173" "hsa-mir-3651" "hsa-mir-3655" "hsa-mir-3922"
## [21] "hsa-mir-3923" "hsa-mir-3926-2" "hsa-mir-490" "hsa-mir-506"
## [25] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [29] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-2" "hsa-mir-514-1"
## [33] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-585" "hsa-mir-876"
## [1] "bicluster2"
## [1] "GATA3.RPPA" "TTF1.RPPA" "MYH11.RPPA" "TFRC.RPPA"
## [5] "CTNNB1.R2Gn" "PIK3R1.R2Gn" "BCL2L1.R2Gn" "TFRC.R2Gn"
## [9] "SQSTM1.R2Gn" "hsa-mir-1-2" "hsa-mir-1185-1" "hsa-mir-124-1"
## [13] "hsa-mir-124-2" "hsa-mir-301b" "hsa-mir-3193" "hsa-mir-3199-1"
## [17] "hsa-mir-329-2" "hsa-mir-3610" "hsa-mir-376a-2" "hsa-mir-380"
## [21] "hsa-mir-3912" "hsa-mir-411" "hsa-mir-487a" "hsa-mir-494"
## [25] "hsa-mir-541" "hsa-mir-570" "hsa-mir-580" "hsa-mir-585"
## [29] "hsa-mir-655" "hsa-mir-656" "hsa-mir-7-2" "hsa-mir-765"
## [33] "hsa-mir-770" "hsa-mir-873" "hsa-mir-876" "hsa-mir-937"
## [1] "bicluster13"
## [1] "ASNS.RPPA" "GATA3.RPPA" "FN1.R2Gn" "EEF2.R2Gn"
## [5] "RPS6.R2Gn" "JUN.R2Gn" "PARK7.R2Gn" "CCND1.R2Gn"
## [9] "COL6A1.R2Gn" "ANXA1.R2Gn" "HSPA1A.R2Gn" "SYP.R2Gn"
## [13] "hsa-mir-1193" "hsa-mir-124-2" "hsa-mir-124-3" "hsa-mir-202"
## [17] "hsa-mir-206" "hsa-mir-31" "hsa-mir-320c-2" "hsa-mir-34b"
## [21] "hsa-mir-3682" "hsa-mir-383" "hsa-mir-466" "hsa-mir-490"
## [25] "hsa-mir-511-1" "hsa-mir-517a" "hsa-mir-518f" "hsa-mir-519a-2"
## [29] "hsa-mir-582" "hsa-mir-592" "hsa-mir-605" "hsa-mir-618"
## [33] "hsa-mir-653" "hsa-mir-7-2" "hsa-mir-891a" "hsa-mir-937"
## [1] "bicluster29"
## [1] "PEA15.RPPA" "EGFR.RPPA" "FASN.RPPA" "TTF1.RPPA"
## [5] "TFRC.RPPA" "PREX1.RPPA" "ERBB3.R2Gn" "ITGA2.R2Gn"
## [9] "FASN.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn" "PIK3R2.R2Gn"
## [13] "HSPA1A.R2Gn" "hsa-mir-1185-1" "hsa-mir-1258" "hsa-mir-135a-1"
## [17] "hsa-mir-139" "hsa-mir-187" "hsa-mir-196b" "hsa-mir-206"
## [21] "hsa-mir-3166" "hsa-mir-3170" "hsa-mir-3199-1" "hsa-mir-320c-2"
## [25] "hsa-mir-335" "hsa-mir-3678" "hsa-mir-433" "hsa-mir-487a"
## [29] "hsa-mir-488" "hsa-mir-517a" "hsa-mir-525" "hsa-mir-541"
## [33] "hsa-mir-668" "hsa-mir-7-3" "hsa-mir-876" "hsa-mir-940"
## [1] "bicluster7"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "GATA3.RPPA" "ATM.RPPA"
## [5] "EGFR.RPPA" "GAPDH.RPPA" "PDK1.RPPA" "TFRC.RPPA"
## [9] "G6PD.R2Gn" "ERBB3.R2Gn" "FN1.R2Gn" "SERPINE1.R2Gn"
## [13] "CCND1.R2Gn" "GAPDH.R2Gn" "NOTCH3.R2Gn" "SYP.R2Gn"
## [17] "PARP1.R2Gn" "IDH3A.R2Gn" "hsa-mir-105-1" "hsa-mir-105-2"
## [21] "hsa-mir-1185-1" "hsa-mir-1226" "hsa-mir-1254" "hsa-mir-1293"
## [25] "hsa-mir-149" "hsa-mir-184" "hsa-mir-2114" "hsa-mir-30c-1"
## [29] "hsa-mir-3130-1" "hsa-mir-3662" "hsa-mir-3922" "hsa-mir-510"
## [33] "hsa-mir-518b" "hsa-mir-548v" "hsa-mir-550a-2" "hsa-mir-582"
## [1] "bicluster31"
## [1] "G6PD.RPPA" "ATM.RPPA" "EGFR.RPPA" "GAPDH.RPPA"
## [5] "MYH11.RPPA" "ERBB3.R2Gn" "CDKN1A.R2Gn" "YBX1.R2Gn"
## [9] "RPS6.R2Gn" "TGM2.R2Gn" "GAPDH.R2Gn" "HSPA1A.R2Gn"
## [13] "hsa-mir-1249" "hsa-mir-1293" "hsa-mir-135a-1" "hsa-mir-200a"
## [17] "hsa-mir-200b" "hsa-mir-3130-1" "hsa-mir-3199-1" "hsa-mir-33b"
## [21] "hsa-mir-3610" "hsa-mir-3682" "hsa-mir-3687" "hsa-mir-372"
## [25] "hsa-mir-3909" "hsa-mir-3934" "hsa-mir-516a-1" "hsa-mir-518c"
## [29] "hsa-mir-525" "hsa-mir-550a-2" "hsa-mir-579" "hsa-mir-580"
## [33] "hsa-mir-585" "hsa-mir-605" "hsa-mir-624" "hsa-mir-7-3"
## [1] "bicluster43"
## [1] "PTEN.RPPA" "FASN.RPPA" "PDCD4.RPPA" "MSH6.RPPA"
## [5] "KDR.R2Gn" "ERBB3.R2Gn" "AKT2.R2Gn" "FASN.R2Gn"
## [9] "RET.R2Gn" "hsa-mir-1269" "hsa-mir-129-1" "hsa-mir-129-2"
## [13] "hsa-mir-1291" "hsa-mir-138-2" "hsa-mir-196a-2" "hsa-mir-200a"
## [17] "hsa-mir-2114" "hsa-mir-3170" "hsa-mir-3191" "hsa-mir-3193"
## [21] "hsa-mir-320c-2" "hsa-mir-3610" "hsa-mir-3687" "hsa-mir-3909"
## [25] "hsa-mir-4326" "hsa-mir-466" "hsa-mir-488" "hsa-mir-510"
## [29] "hsa-mir-552" "hsa-mir-585" "hsa-mir-607" "hsa-mir-615"
## [33] "hsa-mir-636" "hsa-mir-7-2" "hsa-mir-876" "hsa-mir-95"
## [1] "bicluster27"
## [1] "GATA3.RPPA" "ACVRL1.RPPA" "GAPDH.RPPA" "ERBB3.R2Gn"
## [5] "FN1.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn" "NDRG1.R2Gn"
## [9] "HSPA1A.R2Gn" "ERRFI1.R2Gn" "SYP.R2Gn" "PARP1.R2Gn"
## [13] "hsa-mir-1245" "hsa-mir-1255a" "hsa-mir-1270-1" "hsa-mir-1270-2"
## [17] "hsa-mir-133b" "hsa-mir-184" "hsa-mir-29c" "hsa-mir-3934"
## [21] "hsa-mir-483" "hsa-mir-499" "hsa-mir-507" "hsa-mir-510"
## [25] "hsa-mir-511-1" "hsa-mir-511-2" "hsa-mir-513c" "hsa-mir-514b"
## [29] "hsa-mir-516a-1" "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-570"
## [33] "hsa-mir-579" "hsa-mir-580" "hsa-mir-675" "hsa-mir-767"
## [1] "bicluster20"
## [1] "IGFBP2.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn"
## [5] "AKT3.R2Gn" "EIF4G1.R2Gn" "ADAR.R2Gn" "RPS6.R2Gn"
## [9] "ANLN.R2Gn" "STMN1.R2Gn" "TGM2.R2Gn" "CDK1.R2Gn"
## [13] "CTNNA1.R2Gn" "CAV1.R2Gn" "TYMS.R2Gn" "TUBA1B.R2Gn"
## [17] "FOXM1.R2Gn" "COL6A1.R2Gn" "YWHAB.R2Gn" "EZH2.R2Gn"
## [21] "CDKN2A.R2Gn" "hsa-mir-1245" "hsa-mir-1247" "hsa-mir-138-1"
## [25] "hsa-mir-138-2" "hsa-mir-26a-1" "hsa-mir-3190" "hsa-mir-3191"
## [29] "hsa-mir-3199-1" "hsa-mir-372" "hsa-mir-3923" "hsa-mir-3926-1"
## [33] "hsa-mir-466" "hsa-mir-499" "hsa-mir-507" "hsa-mir-876"
## [1] "bicluster37"
## [1] "G6PD.RPPA" "FASN.RPPA" "TTF1.RPPA" "GAPDH.RPPA"
## [5] "MSH6.RPPA" "PREX1.RPPA" "DIRAS3.R2Gn" "FASN.R2Gn"
## [9] "FOXO3.R2Gn" "GAPDH.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1255a"
## [13] "hsa-mir-1292" "hsa-mir-196a-2" "hsa-mir-218-1" "hsa-mir-3191"
## [17] "hsa-mir-3687" "hsa-mir-4326" "hsa-mir-488" "hsa-mir-489"
## [21] "hsa-mir-499" "hsa-mir-504" "hsa-mir-510" "hsa-mir-513a-1"
## [25] "hsa-mir-516b-1" "hsa-mir-518c" "hsa-mir-519a-2" "hsa-mir-548s"
## [29] "hsa-mir-584" "hsa-mir-653" "hsa-mir-656" "hsa-mir-675"
## [33] "hsa-mir-760" "hsa-mir-770" "hsa-mir-873" "hsa-mir-876"
## [1] "bicluster5"
## [1] "G6PD.RPPA" "ASNS.RPPA" "RBM15.RPPA" "ATM.RPPA"
## [5] "EGFR.RPPA" "TSC1.RPPA" "GAPDH.RPPA" "TFRC.RPPA"
## [9] "CDKN1A.R2Gn" "PEA15.R2Gn" "ADAR.R2Gn" "SHC1.R2Gn"
## [13] "GAPDH.R2Gn" "HSPA1A.R2Gn" "hsa-mir-1179" "hsa-mir-1255a"
## [17] "hsa-mir-1305" "hsa-mir-200a" "hsa-mir-200b" "hsa-mir-206"
## [21] "hsa-mir-216b" "hsa-mir-217" "hsa-mir-218-1" "hsa-mir-219-1"
## [25] "hsa-mir-26a-1" "hsa-mir-296" "hsa-mir-3173" "hsa-mir-3676"
## [29] "hsa-mir-3687" "hsa-mir-3909" "hsa-mir-3926-1" "hsa-mir-3940"
## [33] "hsa-mir-548q" "hsa-mir-552" "hsa-mir-580" "hsa-mir-636"
## [1] "bicluster28"
## [1] "TFRC.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn"
## [5] "GAPDH.R2Gn" "TFRC.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn"
## [9] "hsa-mir-1185-1" "hsa-mir-1197" "hsa-mir-1249" "hsa-mir-1254"
## [13] "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1292"
## [17] "hsa-mir-135a-1" "hsa-mir-138-1" "hsa-mir-138-2" "hsa-mir-346"
## [21] "hsa-mir-3610" "hsa-mir-3687" "hsa-mir-380" "hsa-mir-3926-1"
## [25] "hsa-mir-433" "hsa-mir-466" "hsa-mir-488" "hsa-mir-490"
## [29] "hsa-mir-499" "hsa-mir-525" "hsa-mir-541" "hsa-mir-543"
## [33] "hsa-mir-615" "hsa-mir-770" "hsa-mir-885" "hsa-mir-9-3"
## [1] "bicluster9"
## [1] "G6PD.RPPA" "GATA3.RPPA" "EGFR.RPPA" "INPP4B.RPPA"
## [5] "VHL.RPPA" "MYH11.RPPA" "NF2.RPPA" "TFRC.RPPA"
## [9] "G6PD.R2Gn" "CDH2.R2Gn" "TGM2.R2Gn" "HSPA1A.R2Gn"
## [13] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1228"
## [17] "hsa-mir-1247" "hsa-mir-1269" "hsa-mir-206" "hsa-mir-2277"
## [21] "hsa-mir-301b" "hsa-mir-320c-2" "hsa-mir-376a-2" "hsa-mir-411"
## [25] "hsa-mir-499" "hsa-mir-516a-1" "hsa-mir-516b-1" "hsa-mir-517a"
## [29] "hsa-mir-520a" "hsa-mir-525" "hsa-mir-548v" "hsa-mir-577"
## [33] "hsa-mir-607" "hsa-mir-655" "hsa-mir-656" "hsa-mir-668"
## [1] "bicluster12"
## [1] "IGFBP2.RPPA" "GAPDH.RPPA" "TFRC.RPPA" "MSH2.RPPA"
## [5] "ERBB3.R2Gn" "IGFBP2.R2Gn" "CDKN1A.R2Gn" "PDCD4.R2Gn"
## [9] "HSPA1A.R2Gn" "SNAI2.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1"
## [13] "hsa-mir-1262" "hsa-mir-1269" "hsa-mir-129-2" "hsa-mir-1293"
## [17] "hsa-mir-200a" "hsa-mir-31" "hsa-mir-3199-1" "hsa-mir-320c-2"
## [21] "hsa-mir-34b" "hsa-mir-3655" "hsa-mir-3687" "hsa-mir-3923"
## [25] "hsa-mir-3934" "hsa-mir-411" "hsa-mir-429" "hsa-mir-4326"
## [29] "hsa-mir-510" "hsa-mir-548q" "hsa-mir-656" "hsa-mir-891a"
## [33] "hsa-mir-9-1" "hsa-mir-9-2" "hsa-mir-9-3" "hsa-mir-937"
## [1] "bicluster1"
## [1] "G6PD.RPPA" "BRCA2.RPPA" "FASN.RPPA" "ACVRL1.RPPA"
## [5] "GAPDH.RPPA" "TFRC.RPPA" "IGFBP2.R2Gn" "NFE2L2.R2Gn"
## [9] "GAPDH.R2Gn" "hsa-mir-106a" "hsa-mir-1228" "hsa-mir-124-3"
## [13] "hsa-mir-1269" "hsa-mir-1270-2" "hsa-mir-1274b" "hsa-mir-1292"
## [17] "hsa-mir-135a-1" "hsa-mir-135a-2" "hsa-mir-139" "hsa-mir-215"
## [21] "hsa-mir-3130-1" "hsa-mir-3173" "hsa-mir-320c-1" "hsa-mir-346"
## [25] "hsa-mir-34b" "hsa-mir-3619" "hsa-mir-3690" "hsa-mir-380"
## [29] "hsa-mir-516b-1" "hsa-mir-525" "hsa-mir-580" "hsa-mir-607"
## [33] "hsa-mir-618" "hsa-mir-636" "hsa-mir-639" "hsa-mir-765"
## [1] "bicluster23"
## [1] "IGFBP2.RPPA" "PTEN.RPPA" "EGFR.RPPA" "FASN.RPPA"
## [5] "MYH11.RPPA" "PDK1.RPPA" "ERCC1.RPPA" "ADAR.R2Gn"
## [9] "EGFR.R2Gn" "FASN.R2Gn" "SHC1.R2Gn" "PIK3R1.R2Gn"
## [13] "TUBA1B.R2Gn" "ERRFI1.R2Gn" "SYP.R2Gn" "hsa-mir-1251"
## [17] "hsa-mir-135a-1" "hsa-mir-187" "hsa-mir-196a-2" "hsa-mir-219-1"
## [21] "hsa-mir-2277" "hsa-mir-26a-1" "hsa-mir-30c-1" "hsa-mir-3173"
## [25] "hsa-mir-3651" "hsa-mir-3676" "hsa-mir-3687" "hsa-mir-548s"
## [29] "hsa-mir-551b" "hsa-mir-570" "hsa-mir-605" "hsa-mir-636"
## [33] "hsa-mir-659" "hsa-mir-663" "hsa-mir-7-2" "hsa-mir-767"
## [1] "bicluster4"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "G6PD.R2Gn" "IGFBP2.R2Gn"
## [5] "RPS6.R2Gn" "PTK2.R2Gn" "CCND1.R2Gn" "PIK3R2.R2Gn"
## [9] "ERRFI1.R2Gn" "hsa-mir-105-1" "hsa-mir-105-2" "hsa-mir-1247"
## [13] "hsa-mir-1248" "hsa-mir-1249" "hsa-mir-200a" "hsa-mir-204"
## [17] "hsa-mir-2114" "hsa-mir-216b" "hsa-mir-218-1" "hsa-mir-301b"
## [21] "hsa-mir-326" "hsa-mir-34b" "hsa-mir-3610" "hsa-mir-3614"
## [25] "hsa-mir-3909" "hsa-mir-489" "hsa-mir-511-1" "hsa-mir-511-2"
## [29] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-548s" "hsa-mir-561"
## [33] "hsa-mir-615" "hsa-mir-627" "hsa-mir-642a" "hsa-mir-891a"
## [1] "bicluster36"
## [1] "IGFBP2.RPPA" "TTF1.RPPA" "IGFBP2.R2Gn" "ITGA2.R2Gn"
## [5] "COL6A1.R2Gn" "TFRC.R2Gn" "HSPA1A.R2Gn" "SYP.R2Gn"
## [9] "RET.R2Gn" "hsa-mir-1193" "hsa-mir-122" "hsa-mir-124-2"
## [13] "hsa-mir-1248" "hsa-mir-1249" "hsa-mir-1255a" "hsa-mir-1305"
## [17] "hsa-mir-187" "hsa-mir-2114" "hsa-mir-30c-1" "hsa-mir-3173"
## [21] "hsa-mir-3187" "hsa-mir-3199-2" "hsa-mir-3610" "hsa-mir-372"
## [25] "hsa-mir-3926-2" "hsa-mir-429" "hsa-mir-433" "hsa-mir-517a"
## [29] "hsa-mir-551b" "hsa-mir-552" "hsa-mir-585" "hsa-mir-7-3"
## [33] "hsa-mir-876" "hsa-mir-9-1" "hsa-mir-9-2" "hsa-mir-9-3"
## [1] "bicluster14"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "NF2.RPPA" "ERBB3.R2Gn"
## [5] "IGFBP2.R2Gn" "FN1.R2Gn" "EEF2.R2Gn" "CTNNB1.R2Gn"
## [9] "BCL2.R2Gn" "CCND1.R2Gn" "PIK3R1.R2Gn" "GAPDH.R2Gn"
## [13] "COL6A1.R2Gn" "HSPA1A.R2Gn" "SYP.R2Gn" "hsa-mir-1249"
## [17] "hsa-mir-1262" "hsa-mir-1269" "hsa-mir-153-1" "hsa-mir-200a"
## [21] "hsa-mir-200b" "hsa-mir-26a-1" "hsa-mir-301b" "hsa-mir-329-1"
## [25] "hsa-mir-3690" "hsa-mir-3926-1" "hsa-mir-488" "hsa-mir-516a-1"
## [29] "hsa-mir-516a-2" "hsa-mir-517a" "hsa-mir-520a" "hsa-mir-526b"
## [33] "hsa-mir-585" "hsa-mir-7-2" "hsa-mir-7-3" "hsa-mir-9-3"
## [1] "bicluster17"
## [1] "G6PD.RPPA" "FASN.RPPA" "TSC1.RPPA" "TTF1.RPPA"
## [5] "MYH11.RPPA" "ERBB3.R2Gn" "PRKCD.R2Gn" "FN1.R2Gn"
## [9] "PEA15.R2Gn" "ADAR.R2Gn" "SERPINE1.R2Gn" "SHC1.R2Gn"
## [13] "CCND1.R2Gn" "ANXA7.R2Gn" "hsa-mir-124-3" "hsa-mir-1255a"
## [17] "hsa-mir-1270-1" "hsa-mir-1292" "hsa-mir-218-1" "hsa-mir-3199-2"
## [21] "hsa-mir-3610" "hsa-mir-3652" "hsa-mir-3926-2" "hsa-mir-4326"
## [25] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-3"
## [29] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-514-1" "hsa-mir-514-2"
## [33] "hsa-mir-514-3" "hsa-mir-636" "hsa-mir-760" "hsa-mir-9-3"
## [1] "bicluster3"
## [1] "PDCD4.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn" "ADAR.R2Gn"
## [5] "SERPINE1.R2Gn" "MYH9.R2Gn" "HSPA1A.R2Gn" "hsa-mir-124-3"
## [9] "hsa-mir-1248" "hsa-mir-1270-1" "hsa-mir-129-2" "hsa-mir-1292"
## [13] "hsa-mir-1304" "hsa-mir-182" "hsa-mir-183" "hsa-mir-2114"
## [17] "hsa-mir-320c-2" "hsa-mir-3676" "hsa-mir-3678" "hsa-mir-3682"
## [21] "hsa-mir-499" "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1"
## [25] "hsa-mir-518b" "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"
## [29] "hsa-mir-525" "hsa-mir-526b" "hsa-mir-570" "hsa-mir-580"
## [33] "hsa-mir-624" "hsa-mir-7-2" "hsa-mir-765" "hsa-mir-96"
## [1] "bicluster35"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "GATA3.RPPA" "PEA15.RPPA"
## [5] "PDCD4.RPPA" "AR.RPPA" "GAPDH.RPPA" "IGFBP2.R2Gn"
## [9] "CDH2.R2Gn" "EEF2.R2Gn" "YWHAE.R2Gn" "PRKCA.R2Gn"
## [13] "PRRT2.R2Gn" "CAV1.R2Gn" "GAPDH.R2Gn" "HSPA1A.R2Gn"
## [17] "hsa-mir-105-1" "hsa-mir-200b" "hsa-mir-204" "hsa-mir-216a"
## [21] "hsa-mir-296" "hsa-mir-301b" "hsa-mir-3191" "hsa-mir-320c-1"
## [25] "hsa-mir-3926-2" "hsa-mir-3940" "hsa-mir-488" "hsa-mir-516b-1"
## [29] "hsa-mir-517a" "hsa-mir-545" "hsa-mir-548v" "hsa-mir-552"
## [33] "hsa-mir-7-3" "hsa-mir-760" "hsa-mir-891a" "hsa-mir-937"
## [1] "bicluster39"
## [1] "VHL.RPPA" "GAPDH.RPPA" "MSH6.RPPA" "TFRC.RPPA"
## [5] "EEF2.R2Gn" "YWHAE.R2Gn" "PDCD4.R2Gn" "PARK7.R2Gn"
## [9] "PIK3R1.R2Gn" "PRDX1.R2Gn" "TYMS.R2Gn" "NDRG1.R2Gn"
## [13] "TFRC.R2Gn" "ERRFI1.R2Gn" "SQSTM1.R2Gn" "hsa-mir-105-1"
## [17] "hsa-mir-1247" "hsa-mir-1248" "hsa-mir-1251" "hsa-mir-1255a"
## [21] "hsa-mir-1269" "hsa-mir-129-2" "hsa-mir-141" "hsa-mir-183"
## [25] "hsa-mir-218-1" "hsa-mir-3144" "hsa-mir-3928" "hsa-mir-570"
## [29] "hsa-mir-579" "hsa-mir-607" "hsa-mir-627" "hsa-mir-643"
## [33] "hsa-mir-7-3" "hsa-mir-873" "hsa-mir-876" "hsa-mir-939"
## [1] "bicluster26"
## [1] "ATM.RPPA" "EGFR.RPPA" "PDCD4.RPPA" "TFRC.RPPA"
## [5] "ERBB3.R2Gn" "FN1.R2Gn" "CDH2.R2Gn" "SERPINE1.R2Gn"
## [9] "PIK3R1.R2Gn" "TFRC.R2Gn" "ERRFI1.R2Gn" "hsa-mir-1249"
## [13] "hsa-mir-1274b" "hsa-mir-190b" "hsa-mir-216b" "hsa-mir-217"
## [17] "hsa-mir-224" "hsa-mir-296" "hsa-mir-3173" "hsa-mir-3199-1"
## [21] "hsa-mir-320c-2" "hsa-mir-3662" "hsa-mir-3923" "hsa-mir-452"
## [25] "hsa-mir-488" "hsa-mir-499" "hsa-mir-516a-1" "hsa-mir-516a-2"
## [29] "hsa-mir-516b-1" "hsa-mir-525" "hsa-mir-548q" "hsa-mir-561"
## [33] "hsa-mir-577" "hsa-mir-580" "hsa-mir-663" "hsa-mir-675"
## [1] "bicluster40"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "EGFR.RPPA" "MSH6.RPPA"
## [5] "MYH11.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn" "EEF2.R2Gn"
## [9] "TGM2.R2Gn" "MYH11.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1-2"
## [13] "hsa-mir-122" "hsa-mir-1249" "hsa-mir-1270-1" "hsa-mir-129-1"
## [17] "hsa-mir-129-2" "hsa-mir-200a" "hsa-mir-3166" "hsa-mir-3199-1"
## [21] "hsa-mir-429" "hsa-mir-452" "hsa-mir-466" "hsa-mir-489"
## [25] "hsa-mir-490" "hsa-mir-517a" "hsa-mir-526b" "hsa-mir-551b"
## [29] "hsa-mir-639" "hsa-mir-656" "hsa-mir-675" "hsa-mir-7-2"
## [33] "hsa-mir-767" "hsa-mir-873" "hsa-mir-876" "hsa-mir-937"
## [1] "bicluster18"
## [1] "GATA3.RPPA" "PEA15.RPPA" "MSH6.RPPA" "MYH11.RPPA"
## [5] "DIRAS3.R2Gn" "ERBB3.R2Gn" "CDH2.R2Gn" "ITGA2.R2Gn"
## [9] "ADAR.R2Gn" "CTNNB1.R2Gn" "RPS6.R2Gn" "TGM2.R2Gn"
## [13] "GAPDH.R2Gn" "BID.R2Gn" "TFRC.R2Gn" "SYP.R2Gn"
## [17] "PARP1.R2Gn" "TFF1.R2Gn" "hsa-mir-124-3" "hsa-mir-1254"
## [21] "hsa-mir-1255a" "hsa-mir-1269" "hsa-mir-1304" "hsa-mir-3130-1"
## [25] "hsa-mir-3652" "hsa-mir-3678" "hsa-mir-383" "hsa-mir-3926-2"
## [29] "hsa-mir-452" "hsa-mir-510" "hsa-mir-516a-1" "hsa-mir-518b"
## [33] "hsa-mir-548b" "hsa-mir-639" "hsa-mir-656" "hsa-mir-7-2"
## [1] "bicluster6"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "RBM15.RPPA" "EGFR.RPPA"
## [5] "FASN.RPPA" "MSH6.RPPA" "IGFBP2.R2Gn" "CDH2.R2Gn"
## [9] "YWHAZ.R2Gn" "NDRG1.R2Gn" "HSPA1A.R2Gn" "IDH3A.R2Gn"
## [13] "hsa-mir-1228" "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-1292"
## [17] "hsa-mir-135b" "hsa-mir-138-1" "hsa-mir-138-2" "hsa-mir-1909"
## [21] "hsa-mir-216a" "hsa-mir-217" "hsa-mir-296" "hsa-mir-30c-1"
## [25] "hsa-mir-3144" "hsa-mir-3614" "hsa-mir-3620" "hsa-mir-3912"
## [29] "hsa-mir-3940" "hsa-mir-548v" "hsa-mir-585" "hsa-mir-605"
## [33] "hsa-mir-765" "hsa-mir-873" "hsa-mir-876" "hsa-mir-939"
## [1] "bicluster30"
## [1] "EGFR.RPPA" "INPP4B.RPPA" "ACVRL1.RPPA" "PRDX1.RPPA"
## [5] "TFRC.RPPA" "ADAR.R2Gn" "PCNA.R2Gn" "CTNNB1.R2Gn"
## [9] "RPS6.R2Gn" "SHC1.R2Gn" "CCND1.R2Gn" "SYP.R2Gn"
## [13] "RBM3.R2Gn" "RET.R2Gn" "hsa-mir-105-2" "hsa-mir-124-1"
## [17] "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1274b" "hsa-mir-1292"
## [21] "hsa-mir-133b" "hsa-mir-153-1" "hsa-mir-206" "hsa-mir-2114"
## [25] "hsa-mir-3610" "hsa-mir-3614" "hsa-mir-3678" "hsa-mir-3917"
## [29] "hsa-mir-499" "hsa-mir-519a-2" "hsa-mir-570" "hsa-mir-577"
## [33] "hsa-mir-639" "hsa-mir-7-2" "hsa-mir-767" "hsa-mir-940"
## [1] "bicluster8"
## [1] "G6PD.RPPA" "ASNS.RPPA" "PTEN.RPPA" "PEA15.RPPA"
## [5] "ATM.RPPA" "MYH11.RPPA" "TFRC.RPPA" "KDR.R2Gn"
## [9] "ERBB3.R2Gn" "FN1.R2Gn" "AKT2.R2Gn" "CDH2.R2Gn"
## [13] "EEF2.R2Gn" "SERPINE1.R2Gn" "TGM2.R2Gn" "PDK1.R2Gn"
## [17] "hsa-mir-122" "hsa-mir-141" "hsa-mir-149" "hsa-mir-30c-1"
## [21] "hsa-mir-3170" "hsa-mir-3191" "hsa-mir-329-2" "hsa-mir-346"
## [25] "hsa-mir-3652" "hsa-mir-3682" "hsa-mir-3687" "hsa-mir-3909"
## [29] "hsa-mir-3940" "hsa-mir-511-2" "hsa-mir-519a-2" "hsa-mir-520a"
## [33] "hsa-mir-548s" "hsa-mir-592" "hsa-mir-639" "hsa-mir-765"
## [1] "bicluster11"
## [1] "G6PD.RPPA" "PEA15.RPPA" "ACVRL1.RPPA" "VHL.RPPA"
## [5] "AR.RPPA" "MYH11.RPPA" "G6PD.R2Gn" "ERBB3.R2Gn"
## [9] "FN1.R2Gn" "EEF2.R2Gn" "TGM2.R2Gn" "COL6A1.R2Gn"
## [13] "CHGA.R2Gn" "hsa-mir-1270-1" "hsa-mir-129-2" "hsa-mir-1293"
## [17] "hsa-mir-1909" "hsa-mir-26a-1" "hsa-mir-320c-1" "hsa-mir-329-1"
## [21] "hsa-mir-3610" "hsa-mir-3655" "hsa-mir-3676" "hsa-mir-4326"
## [25] "hsa-mir-507" "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-518b"
## [29] "hsa-mir-525" "hsa-mir-570" "hsa-mir-580" "hsa-mir-592"
## [33] "hsa-mir-639" "hsa-mir-655" "hsa-mir-765" "hsa-mir-940"
## [1] "bicluster15"
## [1] "PEA15.RPPA" "FASN.RPPA" "PDCD4.RPPA" "VHL.RPPA"
## [5] "ERRFI1.R2Gn" "SYP.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1258"
## [9] "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1274b" "hsa-mir-153-1"
## [13] "hsa-mir-2114" "hsa-mir-218-1" "hsa-mir-301b" "hsa-mir-3173"
## [17] "hsa-mir-320c-1" "hsa-mir-346" "hsa-mir-3662" "hsa-mir-483"
## [21] "hsa-mir-507" "hsa-mir-516a-1" "hsa-mir-516b-1" "hsa-mir-517a"
## [25] "hsa-mir-518b" "hsa-mir-519a-2" "hsa-mir-548b" "hsa-mir-551b"
## [29] "hsa-mir-552" "hsa-mir-561" "hsa-mir-570" "hsa-mir-670"
## [33] "hsa-mir-7-2" "hsa-mir-765" "hsa-mir-876" "hsa-mir-935"
## [1] "bicluster32"
## [1] "G6PD.RPPA" "RBM15.RPPA" "MSH6.RPPA" "DIRAS3.R2Gn"
## [5] "ERBB3.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn" "CDKN1A.R2Gn"
## [9] "SERPINE1.R2Gn" "CTNNB1.R2Gn" "LCN2.R2Gn" "RPS6.R2Gn"
## [13] "JUN.R2Gn" "HSPA1A.R2Gn" "IDH3A.R2Gn" "hsa-mir-105-2"
## [17] "hsa-mir-1249" "hsa-mir-1269" "hsa-mir-133b" "hsa-mir-141"
## [21] "hsa-mir-144" "hsa-mir-2114" "hsa-mir-3170" "hsa-mir-3926-2"
## [25] "hsa-mir-451" "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a"
## [29] "hsa-mir-518c" "hsa-mir-561" "hsa-mir-570" "hsa-mir-605"
## [33] "hsa-mir-663" "hsa-mir-708" "hsa-mir-760" "hsa-mir-935"
## [1] "bicluster33"
## [1] "PDCD4.RPPA" "FN1.R2Gn" "CTNNB1.R2Gn" "GAPDH.R2Gn"
## [5] "HSPA1A.R2Gn" "hsa-mir-1185-2" "hsa-mir-1247" "hsa-mir-1249"
## [9] "hsa-mir-133b" "hsa-mir-137" "hsa-mir-138-1" "hsa-mir-187"
## [13] "hsa-mir-196a-2" "hsa-mir-200a" "hsa-mir-216b" "hsa-mir-3173"
## [17] "hsa-mir-3191" "hsa-mir-3193" "hsa-mir-346" "hsa-mir-3678"
## [21] "hsa-mir-383" "hsa-mir-490" "hsa-mir-499" "hsa-mir-504"
## [25] "hsa-mir-510" "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1"
## [29] "hsa-mir-517a" "hsa-mir-526b" "hsa-mir-615" "hsa-mir-765"
## [33] "hsa-mir-876" "hsa-mir-891a" "hsa-mir-939" "hsa-mir-940"
## [1] "bicluster24"
## [1] "EGFR.RPPA" "TTF1.RPPA" "XBP1.RPPA" "MSH6.RPPA"
## [5] "NF2.RPPA" "PDK1.RPPA" "CTNNB1.R2Gn" "RPS6.R2Gn"
## [9] "PRKCA.R2Gn" "PIK3R1.R2Gn" "NDRG1.R2Gn" "HSPA1A.R2Gn"
## [13] "CHGA.R2Gn" "hsa-mir-1197" "hsa-mir-1258" "hsa-mir-1270-1"
## [17] "hsa-mir-1304" "hsa-mir-1305" "hsa-mir-200a" "hsa-mir-205"
## [21] "hsa-mir-3610" "hsa-mir-3909" "hsa-mir-507" "hsa-mir-511-1"
## [25] "hsa-mir-516a-1" "hsa-mir-516b-1" "hsa-mir-518b" "hsa-mir-548q"
## [29] "hsa-mir-548v" "hsa-mir-552" "hsa-mir-570" "hsa-mir-577"
## [33] "hsa-mir-605" "hsa-mir-653" "hsa-mir-656" "hsa-mir-937"top_5_perc_result = list("1bc" = f1_5,
"2bc" = f2_5,
"3bc" = f3_5,
"5bc" = f5_5,
"10bc" = f10_5,
"15bc" = f15_5,
"20bc" = f20_5,
"35bc" = f35_5,
"43bc" = f43_5)
saveRDS(top_5_perc_result, file = "data/sel_features/results_fabia_top_5_percent.rds")Top 10%
f1_10 = top_x_percent(fabia_1, perct = 10)## [1] "bicluster1"
## [1] "G6PD.RPPA" "FASN.RPPA" "INPP4B.RPPA" "TTF1.RPPA"
## [5] "PRDX1.RPPA" "G6PD.R2Gn" "TGM2.R2Gn" "SQSTM1.R2Gn"
## [9] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193" "hsa-mir-1197"
## [13] "hsa-mir-127" "hsa-mir-134" "hsa-mir-136" "hsa-mir-154"
## [17] "hsa-mir-205" "hsa-mir-206" "hsa-mir-299" "hsa-mir-323"
## [21] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337"
## [25] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [29] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [33] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-409"
## [37] "hsa-mir-410" "hsa-mir-411" "hsa-mir-412" "hsa-mir-431"
## [41] "hsa-mir-432" "hsa-mir-433" "hsa-mir-466" "hsa-mir-485"
## [45] "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-489" "hsa-mir-493"
## [49] "hsa-mir-494" "hsa-mir-495" "hsa-mir-496" "hsa-mir-516a-2"
## [53] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-518f"
## [57] "hsa-mir-520a" "hsa-mir-526b" "hsa-mir-539" "hsa-mir-541"
## [61] "hsa-mir-543" "hsa-mir-577" "hsa-mir-654" "hsa-mir-655"
## [65] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-758"
## [69] "hsa-mir-770" "hsa-mir-876" "hsa-mir-889"f2_10 = top_x_percent(fabia_2, perct = 10)## [1] "bicluster2"
## [1] "G6PD.RPPA" "FASN.RPPA" "TTF1.RPPA" "TGM2.R2Gn"
## [5] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [9] "hsa-mir-127" "hsa-mir-134" "hsa-mir-136" "hsa-mir-154"
## [13] "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [17] "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369" "hsa-mir-370"
## [21] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c"
## [25] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-381"
## [29] "hsa-mir-382" "hsa-mir-409" "hsa-mir-410" "hsa-mir-411"
## [33] "hsa-mir-412" "hsa-mir-431" "hsa-mir-432" "hsa-mir-433"
## [37] "hsa-mir-466" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b"
## [41] "hsa-mir-493" "hsa-mir-494" "hsa-mir-495" "hsa-mir-496"
## [45] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [49] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [53] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [57] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-539"
## [61] "hsa-mir-541" "hsa-mir-543" "hsa-mir-605" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster1"
## [1] "GATA3.RPPA" "FN1.R2Gn" "CDH2.R2Gn" "CTNNB1.R2Gn"
## [5] "CCND1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [9] "hsa-mir-124-3" "hsa-mir-1269" "hsa-mir-127" "hsa-mir-134"
## [13] "hsa-mir-135b" "hsa-mir-136" "hsa-mir-154" "hsa-mir-206"
## [17] "hsa-mir-2114" "hsa-mir-296" "hsa-mir-299" "hsa-mir-3144"
## [21] "hsa-mir-3166" "hsa-mir-3199-1" "hsa-mir-323" "hsa-mir-323b"
## [25] "hsa-mir-329-1" "hsa-mir-3655" "hsa-mir-370" "hsa-mir-376a-1"
## [29] "hsa-mir-376a-2" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [33] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-3923"
## [37] "hsa-mir-3926-2" "hsa-mir-409" "hsa-mir-411" "hsa-mir-429"
## [41] "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494"
## [45] "hsa-mir-496" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [49] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [53] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [57] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [61] "hsa-mir-517a" "hsa-mir-541" "hsa-mir-543" "hsa-mir-580"
## [65] "hsa-mir-582" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [69] "hsa-mir-668" "hsa-mir-758" "hsa-mir-889"f3_10 = top_x_percent(fabia_3, perct = 10)## [1] "bicluster2"
## [1] "G6PD.RPPA" "RBM15.RPPA" "FASN.RPPA" "TTF1.RPPA"
## [5] "VHL.RPPA" "TGM2.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1"
## [9] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-1258" "hsa-mir-127"
## [13] "hsa-mir-134" "hsa-mir-136" "hsa-mir-154" "hsa-mir-299"
## [17] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [21] "hsa-mir-337" "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1"
## [25] "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377"
## [29] "hsa-mir-379" "hsa-mir-380" "hsa-mir-381" "hsa-mir-382"
## [33] "hsa-mir-409" "hsa-mir-410" "hsa-mir-411" "hsa-mir-412"
## [37] "hsa-mir-431" "hsa-mir-432" "hsa-mir-433" "hsa-mir-466"
## [41] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-494"
## [45] "hsa-mir-496" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [49] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [53] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [57] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [61] "hsa-mir-539" "hsa-mir-541" "hsa-mir-605" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster3"
## [1] "PTEN.RPPA" "GATA3.RPPA" "TSC1.RPPA" "IGFBP2.R2Gn"
## [5] "FN1.R2Gn" "AKT2.R2Gn" "CDH2.R2Gn" "GATA3.R2Gn"
## [9] "PEA15.R2Gn" "ADAR.R2Gn" "CTNNB1.R2Gn" "SHC1.R2Gn"
## [13] "CCND1.R2Gn" "GAPDH.R2Gn" "RPTOR.R2Gn" "hsa-mir-1185-1"
## [17] "hsa-mir-1185-2" "hsa-mir-124-1" "hsa-mir-124-3" "hsa-mir-1258"
## [21] "hsa-mir-1269" "hsa-mir-1293" "hsa-mir-135b" "hsa-mir-139"
## [25] "hsa-mir-183" "hsa-mir-206" "hsa-mir-2114" "hsa-mir-296"
## [29] "hsa-mir-3144" "hsa-mir-3166" "hsa-mir-3193" "hsa-mir-3199-1"
## [33] "hsa-mir-320c-2" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-3655"
## [37] "hsa-mir-3662" "hsa-mir-376a-2" "hsa-mir-3923" "hsa-mir-3926-2"
## [41] "hsa-mir-411" "hsa-mir-429" "hsa-mir-485" "hsa-mir-487a"
## [45] "hsa-mir-494" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [49] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [53] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [57] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [61] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-518b" "hsa-mir-519a-2"
## [65] "hsa-mir-525" "hsa-mir-543" "hsa-mir-580" "hsa-mir-582"
## [69] "hsa-mir-655" "hsa-mir-656" "hsa-mir-668"
## [1] "bicluster1"
## [1] "G6PD.RPPA" "ERBB3.R2Gn" "FN1.R2Gn" "CDH2.R2Gn"
## [5] "CTNNB1.R2Gn" "TGM2.R2Gn" "CCND1.R2Gn" "hsa-mir-1185-1"
## [9] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-1269" "hsa-mir-127"
## [13] "hsa-mir-1270-2" "hsa-mir-134" "hsa-mir-135b" "hsa-mir-136"
## [17] "hsa-mir-154" "hsa-mir-206" "hsa-mir-299" "hsa-mir-3144"
## [21] "hsa-mir-3166" "hsa-mir-3199-1" "hsa-mir-323" "hsa-mir-323b"
## [25] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-3655"
## [29] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [33] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [37] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-3923"
## [41] "hsa-mir-409" "hsa-mir-410" "hsa-mir-411" "hsa-mir-431"
## [45] "hsa-mir-432" "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a"
## [49] "hsa-mir-487b" "hsa-mir-494" "hsa-mir-495" "hsa-mir-496"
## [53] "hsa-mir-507" "hsa-mir-510" "hsa-mir-517a" "hsa-mir-518b"
## [57] "hsa-mir-520a" "hsa-mir-526b" "hsa-mir-539" "hsa-mir-541"
## [61] "hsa-mir-543" "hsa-mir-577" "hsa-mir-580" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"f5_10 = top_x_percent(fabia_5, perct = 10)## [1] "bicluster2"
## [1] "G6PD.RPPA" "FASN.RPPA" "INPP4B.RPPA" "TTF1.RPPA"
## [5] "PRDX1.RPPA" "MSH6.RPPA" "G6PD.R2Gn" "TGM2.R2Gn"
## [9] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"
## [13] "hsa-mir-1197" "hsa-mir-127" "hsa-mir-134" "hsa-mir-136"
## [17] "hsa-mir-146a" "hsa-mir-154" "hsa-mir-299" "hsa-mir-323"
## [21] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337"
## [25] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [29] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [33] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-409"
## [37] "hsa-mir-410" "hsa-mir-411" "hsa-mir-412" "hsa-mir-431"
## [41] "hsa-mir-432" "hsa-mir-433" "hsa-mir-466" "hsa-mir-485"
## [45] "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-489" "hsa-mir-493"
## [49] "hsa-mir-494" "hsa-mir-495" "hsa-mir-496" "hsa-mir-516a-2"
## [53] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-518f"
## [57] "hsa-mir-539" "hsa-mir-541" "hsa-mir-543" "hsa-mir-577"
## [61] "hsa-mir-605" "hsa-mir-653" "hsa-mir-654" "hsa-mir-655"
## [65] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-758"
## [69] "hsa-mir-770" "hsa-mir-876" "hsa-mir-889"
## [1] "bicluster5"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "PTEN.RPPA" "GATA3.RPPA"
## [5] "FASN.RPPA" "TSC1.RPPA" "VHL.RPPA" "TFRC.RPPA"
## [9] "AKT1S1.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn" "AKT2.R2Gn"
## [13] "CDH2.R2Gn" "GATA3.R2Gn" "PEA15.R2Gn" "CTNNB1.R2Gn"
## [17] "SHC1.R2Gn" "CCND1.R2Gn" "PIK3R1.R2Gn" "XIAP.R2Gn"
## [21] "PXN.R2Gn" "RPTOR.R2Gn" "hsa-mir-124-1" "hsa-mir-124-3"
## [25] "hsa-mir-1258" "hsa-mir-1291" "hsa-mir-135b" "hsa-mir-139"
## [29] "hsa-mir-182" "hsa-mir-183" "hsa-mir-196b" "hsa-mir-206"
## [33] "hsa-mir-2114" "hsa-mir-218-2" "hsa-mir-296" "hsa-mir-3166"
## [37] "hsa-mir-3170" "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-3655"
## [41] "hsa-mir-3662" "hsa-mir-3690" "hsa-mir-3909" "hsa-mir-3923"
## [45] "hsa-mir-3926-2" "hsa-mir-429" "hsa-mir-466" "hsa-mir-506"
## [49] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [53] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [57] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [61] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-548b" "hsa-mir-548q"
## [65] "hsa-mir-552" "hsa-mir-582" "hsa-mir-605" "hsa-mir-615"
## [69] "hsa-mir-675" "hsa-mir-887" "hsa-mir-935"
## [1] "bicluster1"
## [1] "G6PD.RPPA" "FASN.RPPA" "TTF1.RPPA" "TGM2.R2Gn"
## [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193" "hsa-mir-1197"
## [9] "hsa-mir-127" "hsa-mir-134" "hsa-mir-136" "hsa-mir-154"
## [13] "hsa-mir-2114" "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b"
## [17] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369"
## [21] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"
## [25] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379" "hsa-mir-380"
## [29] "hsa-mir-381" "hsa-mir-382" "hsa-mir-409" "hsa-mir-410"
## [33] "hsa-mir-411" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [37] "hsa-mir-433" "hsa-mir-466" "hsa-mir-485" "hsa-mir-487a"
## [41] "hsa-mir-487b" "hsa-mir-493" "hsa-mir-494" "hsa-mir-495"
## [45] "hsa-mir-496" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [49] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [53] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [57] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [61] "hsa-mir-539" "hsa-mir-541" "hsa-mir-543" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster4"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "GATA3.RPPA" "EGFR.RPPA"
## [5] "G6PD.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn" "CTNNB1.R2Gn"
## [9] "CCND1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-124-3"
## [13] "hsa-mir-1269" "hsa-mir-127" "hsa-mir-134" "hsa-mir-135b"
## [17] "hsa-mir-136" "hsa-mir-154" "hsa-mir-206" "hsa-mir-2114"
## [21] "hsa-mir-296" "hsa-mir-299" "hsa-mir-3144" "hsa-mir-3166"
## [25] "hsa-mir-3199-1" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [29] "hsa-mir-329-2" "hsa-mir-3655" "hsa-mir-3662" "hsa-mir-370"
## [33] "hsa-mir-376a-2" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [37] "hsa-mir-380" "hsa-mir-382" "hsa-mir-3923" "hsa-mir-409"
## [41] "hsa-mir-411" "hsa-mir-429" "hsa-mir-433" "hsa-mir-485"
## [45] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-496" "hsa-mir-506"
## [49] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [53] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [57] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [61] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-543" "hsa-mir-548q"
## [65] "hsa-mir-577" "hsa-mir-582" "hsa-mir-654" "hsa-mir-655"
## [69] "hsa-mir-656" "hsa-mir-668" "hsa-mir-889"
## [1] "bicluster3"
## [1] "G6PD.RPPA" "INPP4B.RPPA" "CDH2.R2Gn" "CTNNB1.R2Gn"
## [5] "TGM2.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [9] "hsa-mir-1269" "hsa-mir-127" "hsa-mir-133b" "hsa-mir-134"
## [13] "hsa-mir-136" "hsa-mir-154" "hsa-mir-205" "hsa-mir-206"
## [17] "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [21] "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-3678" "hsa-mir-369"
## [25] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"
## [29] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379" "hsa-mir-380"
## [33] "hsa-mir-381" "hsa-mir-382" "hsa-mir-409" "hsa-mir-410"
## [37] "hsa-mir-411" "hsa-mir-431" "hsa-mir-432" "hsa-mir-433"
## [41] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-494"
## [45] "hsa-mir-495" "hsa-mir-496" "hsa-mir-516a-1" "hsa-mir-516a-2"
## [49] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-518c"
## [53] "hsa-mir-518f" "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"
## [57] "hsa-mir-525" "hsa-mir-526b" "hsa-mir-539" "hsa-mir-541"
## [61] "hsa-mir-543" "hsa-mir-577" "hsa-mir-580" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"f10_10 = top_x_percent(fabia_10, perct = 10)## [1] "bicluster9"
## [1] "G6PD.RPPA" "FASN.RPPA" "INPP4B.RPPA" "TTF1.RPPA"
## [5] "VHL.RPPA" "PRDX1.RPPA" "FASN.R2Gn" "TGM2.R2Gn"
## [9] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [13] "hsa-mir-127" "hsa-mir-134" "hsa-mir-136" "hsa-mir-146a"
## [17] "hsa-mir-154" "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b"
## [21] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369"
## [25] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"
## [29] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379" "hsa-mir-380"
## [33] "hsa-mir-381" "hsa-mir-382" "hsa-mir-409" "hsa-mir-410"
## [37] "hsa-mir-411" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [41] "hsa-mir-433" "hsa-mir-466" "hsa-mir-485" "hsa-mir-487a"
## [45] "hsa-mir-487b" "hsa-mir-489" "hsa-mir-493" "hsa-mir-494"
## [49] "hsa-mir-495" "hsa-mir-496" "hsa-mir-510" "hsa-mir-513a-1"
## [53] "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-539" "hsa-mir-541"
## [57] "hsa-mir-543" "hsa-mir-548v" "hsa-mir-577" "hsa-mir-605"
## [61] "hsa-mir-653" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [65] "hsa-mir-665" "hsa-mir-668" "hsa-mir-758" "hsa-mir-770"
## [69] "hsa-mir-873" "hsa-mir-876" "hsa-mir-889"
## [1] "bicluster10"
## [1] "G6PD.RPPA" "RBM15.RPPA" "FASN.RPPA" "TSC1.RPPA"
## [5] "TTF1.RPPA" "VHL.RPPA" "AR.RPPA" "TFRC.RPPA"
## [9] "AKT1S1.R2Gn" "IGFBP2.R2Gn" "AKT2.R2Gn" "FASN.R2Gn"
## [13] "CTNNB1.R2Gn" "CCND1.R2Gn" "PIK3R1.R2Gn" "PXN.R2Gn"
## [17] "RPTOR.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1193"
## [21] "hsa-mir-1258" "hsa-mir-127" "hsa-mir-1291" "hsa-mir-136"
## [25] "hsa-mir-2114" "hsa-mir-323" "hsa-mir-329-1" "hsa-mir-329-2"
## [29] "hsa-mir-337" "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1"
## [33] "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-377" "hsa-mir-380"
## [37] "hsa-mir-3909" "hsa-mir-3922" "hsa-mir-3926-2" "hsa-mir-412"
## [41] "hsa-mir-431" "hsa-mir-432" "hsa-mir-466" "hsa-mir-487a"
## [45] "hsa-mir-487b" "hsa-mir-493" "hsa-mir-506" "hsa-mir-507"
## [49] "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3"
## [53] "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"
## [57] "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [61] "hsa-mir-514b" "hsa-mir-541" "hsa-mir-605" "hsa-mir-615"
## [65] "hsa-mir-653" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [69] "hsa-mir-665" "hsa-mir-770" "hsa-mir-876"
## [1] "bicluster7"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "GATA3.RPPA" "TSC1.RPPA"
## [5] "TFRC.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn" "CDH2.R2Gn"
## [9] "GATA3.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn" "XIAP.R2Gn"
## [13] "RPTOR.R2Gn" "SNAI2.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [17] "hsa-mir-124-1" "hsa-mir-124-3" "hsa-mir-1258" "hsa-mir-1269"
## [21] "hsa-mir-135b" "hsa-mir-154" "hsa-mir-183" "hsa-mir-187"
## [25] "hsa-mir-199a-2" "hsa-mir-206" "hsa-mir-2114" "hsa-mir-218-2"
## [29] "hsa-mir-296" "hsa-mir-29c" "hsa-mir-3144" "hsa-mir-3166"
## [33] "hsa-mir-3191" "hsa-mir-3193" "hsa-mir-3199-1" "hsa-mir-320c-2"
## [37] "hsa-mir-323b" "hsa-mir-3655" "hsa-mir-3662" "hsa-mir-3690"
## [41] "hsa-mir-377" "hsa-mir-3923" "hsa-mir-3926-2" "hsa-mir-411"
## [45] "hsa-mir-429" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494"
## [49] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [53] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [57] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [61] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-543"
## [65] "hsa-mir-548q" "hsa-mir-582" "hsa-mir-605" "hsa-mir-655"
## [69] "hsa-mir-656" "hsa-mir-668" "hsa-mir-887"
## [1] "bicluster2"
## [1] "G6PD.RPPA" "GATA3.RPPA" "G6PD.R2Gn" "FN1.R2Gn"
## [5] "CTNNB1.R2Gn" "TGM2.R2Gn" "CCND1.R2Gn" "hsa-mir-1185-1"
## [9] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-127" "hsa-mir-134"
## [13] "hsa-mir-136" "hsa-mir-154" "hsa-mir-206" "hsa-mir-299"
## [17] "hsa-mir-3193" "hsa-mir-3199-1" "hsa-mir-323" "hsa-mir-323b"
## [21] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369"
## [25] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"
## [29] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379" "hsa-mir-380"
## [33] "hsa-mir-381" "hsa-mir-382" "hsa-mir-409" "hsa-mir-410"
## [37] "hsa-mir-411" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [41] "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b"
## [45] "hsa-mir-493" "hsa-mir-494" "hsa-mir-495" "hsa-mir-496"
## [49] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"
## [53] "hsa-mir-518b" "hsa-mir-518c" "hsa-mir-518f" "hsa-mir-519a-2"
## [57] "hsa-mir-520a" "hsa-mir-526b" "hsa-mir-539" "hsa-mir-541"
## [61] "hsa-mir-543" "hsa-mir-577" "hsa-mir-580" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster1"
## [1] "G6PD.RPPA" "ASNS.RPPA" "FASN.RPPA" "TTF1.RPPA"
## [5] "FN1.R2Gn" "YWHAE.R2Gn" "TGM2.R2Gn" "hsa-mir-1185-1"
## [9] "hsa-mir-1185-2" "hsa-mir-1193" "hsa-mir-1197" "hsa-mir-1269"
## [13] "hsa-mir-127" "hsa-mir-129-2" "hsa-mir-134" "hsa-mir-136"
## [17] "hsa-mir-137" "hsa-mir-146a" "hsa-mir-154" "hsa-mir-155"
## [21] "hsa-mir-206" "hsa-mir-26a-1" "hsa-mir-296" "hsa-mir-299"
## [25] "hsa-mir-3144" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [29] "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369" "hsa-mir-370"
## [33] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c"
## [37] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-381"
## [41] "hsa-mir-382" "hsa-mir-3926-1" "hsa-mir-409" "hsa-mir-410"
## [45] "hsa-mir-411" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [49] "hsa-mir-433" "hsa-mir-452" "hsa-mir-485" "hsa-mir-487a"
## [53] "hsa-mir-487b" "hsa-mir-493" "hsa-mir-494" "hsa-mir-495"
## [57] "hsa-mir-496" "hsa-mir-539" "hsa-mir-541" "hsa-mir-543"
## [61] "hsa-mir-544" "hsa-mir-577" "hsa-mir-582" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster3"
## [1] "FASN.RPPA" "PDCD4.RPPA" "AKT1S1.R2Gn" "FN1.R2Gn"
## [5] "TGM2.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [9] "hsa-mir-127" "hsa-mir-134" "hsa-mir-136" "hsa-mir-154"
## [13] "hsa-mir-205" "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b"
## [17] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-370" "hsa-mir-376a-1"
## [21] "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377"
## [25] "hsa-mir-380" "hsa-mir-382" "hsa-mir-409" "hsa-mir-410"
## [29] "hsa-mir-411" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [33] "hsa-mir-433" "hsa-mir-466" "hsa-mir-485" "hsa-mir-487a"
## [37] "hsa-mir-487b" "hsa-mir-494" "hsa-mir-496" "hsa-mir-506"
## [41] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [45] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [49] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [53] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-516a-1" "hsa-mir-516a-2"
## [57] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-518f"
## [61] "hsa-mir-520a" "hsa-mir-539" "hsa-mir-541" "hsa-mir-543"
## [65] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [69] "hsa-mir-668" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster8"
## [1] "G6PD.RPPA" "G6PD.R2Gn" "ERBB3.R2Gn" "FN1.R2Gn"
## [5] "TGM2.R2Gn" "ERRFI1.R2Gn" "hsa-mir-105-2" "hsa-mir-1185-1"
## [9] "hsa-mir-1185-2" "hsa-mir-1193" "hsa-mir-1197" "hsa-mir-1269"
## [13] "hsa-mir-127" "hsa-mir-1270-2" "hsa-mir-134" "hsa-mir-136"
## [17] "hsa-mir-154" "hsa-mir-205" "hsa-mir-206" "hsa-mir-299"
## [21] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [25] "hsa-mir-337" "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1"
## [29] "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377"
## [33] "hsa-mir-379" "hsa-mir-380" "hsa-mir-381" "hsa-mir-382"
## [37] "hsa-mir-409" "hsa-mir-410" "hsa-mir-411" "hsa-mir-412"
## [41] "hsa-mir-431" "hsa-mir-432" "hsa-mir-433" "hsa-mir-466"
## [45] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-493"
## [49] "hsa-mir-494" "hsa-mir-495" "hsa-mir-496" "hsa-mir-516a-1"
## [53] "hsa-mir-516a-2" "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-519a-2"
## [57] "hsa-mir-520a" "hsa-mir-526b" "hsa-mir-539" "hsa-mir-541"
## [61] "hsa-mir-543" "hsa-mir-544" "hsa-mir-654" "hsa-mir-655"
## [65] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-758"
## [69] "hsa-mir-767" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster6"
## [1] "G6PD.RPPA" "RBM15.RPPA" "FASN.RPPA" "VHL.RPPA"
## [5] "PRDX1.RPPA" "GAPDH.RPPA" "MSH6.RPPA" "TFRC.RPPA"
## [9] "PREX1.RPPA" "AKT1S1.R2Gn" "IGFBP2.R2Gn" "AKT2.R2Gn"
## [13] "CDH2.R2Gn" "GATA3.R2Gn" "FASN.R2Gn" "EEF2.R2Gn"
## [17] "CTNNB1.R2Gn" "GAPDH.R2Gn" "COL6A1.R2Gn" "ANXA1.R2Gn"
## [21] "HSPA1A.R2Gn" "PXN.R2Gn" "SYP.R2Gn" "RPTOR.R2Gn"
## [25] "SQSTM1.R2Gn" "hsa-mir-1193" "hsa-mir-124-1" "hsa-mir-124-3"
## [29] "hsa-mir-1258" "hsa-mir-1270-1" "hsa-mir-135b" "hsa-mir-137"
## [33] "hsa-mir-146a" "hsa-mir-153-1" "hsa-mir-153-2" "hsa-mir-196a-1"
## [37] "hsa-mir-196a-2" "hsa-mir-26a-1" "hsa-mir-3166" "hsa-mir-3682"
## [41] "hsa-mir-3690" "hsa-mir-3922" "hsa-mir-3926-2" "hsa-mir-3934"
## [45] "hsa-mir-3940" "hsa-mir-412" "hsa-mir-466" "hsa-mir-506"
## [49] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [53] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [57] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [61] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-544" "hsa-mir-548q"
## [65] "hsa-mir-548v" "hsa-mir-552" "hsa-mir-592" "hsa-mir-605"
## [69] "hsa-mir-653" "hsa-mir-708" "hsa-mir-9-3"
## [1] "bicluster5"
## [1] "ASNS.RPPA" "EGFR.RPPA" "CDH2.R2Gn" "PEA15.R2Gn"
## [5] "ADAR.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn" "GAPDH.R2Gn"
## [9] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193" "hsa-mir-1197"
## [13] "hsa-mir-1255a" "hsa-mir-1269" "hsa-mir-127" "hsa-mir-134"
## [17] "hsa-mir-136" "hsa-mir-138-1" "hsa-mir-139" "hsa-mir-154"
## [21] "hsa-mir-218-1" "hsa-mir-218-2" "hsa-mir-299" "hsa-mir-320b-2"
## [25] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [29] "hsa-mir-337" "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1"
## [33] "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377"
## [37] "hsa-mir-379" "hsa-mir-380" "hsa-mir-381" "hsa-mir-382"
## [41] "hsa-mir-3909" "hsa-mir-3926-1" "hsa-mir-409" "hsa-mir-410"
## [45] "hsa-mir-411" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [49] "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b"
## [53] "hsa-mir-488" "hsa-mir-493" "hsa-mir-494" "hsa-mir-495"
## [57] "hsa-mir-496" "hsa-mir-499" "hsa-mir-539" "hsa-mir-541"
## [61] "hsa-mir-543" "hsa-mir-552" "hsa-mir-585" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-668" "hsa-mir-758"
## [69] "hsa-mir-770" "hsa-mir-887" "hsa-mir-889"
## [1] "bicluster4"
## [1] "G6PD.RPPA" "PEA15.RPPA" "VHL.RPPA" "NF2.RPPA"
## [5] "G6PD.R2Gn" "PEA15.R2Gn" "PCNA.R2Gn" "ANLN.R2Gn"
## [9] "SHC1.R2Gn" "CTNNA1.R2Gn" "GAPDH.R2Gn" "TUBA1B.R2Gn"
## [13] "TFRC.R2Gn" "PXN.R2Gn" "hsa-mir-105-1" "hsa-mir-105-2"
## [17] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1249" "hsa-mir-1269"
## [21] "hsa-mir-127" "hsa-mir-134" "hsa-mir-136" "hsa-mir-154"
## [25] "hsa-mir-195" "hsa-mir-216b" "hsa-mir-217" "hsa-mir-2277"
## [29] "hsa-mir-296" "hsa-mir-299" "hsa-mir-3200" "hsa-mir-323"
## [33] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337"
## [37] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376c"
## [41] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-382"
## [45] "hsa-mir-3926-2" "hsa-mir-411" "hsa-mir-433" "hsa-mir-483"
## [49] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494" "hsa-mir-496"
## [53] "hsa-mir-507" "hsa-mir-508" "hsa-mir-511-2" "hsa-mir-539"
## [57] "hsa-mir-543" "hsa-mir-548q" "hsa-mir-552" "hsa-mir-577"
## [61] "hsa-mir-598" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [65] "hsa-mir-665" "hsa-mir-668" "hsa-mir-767" "hsa-mir-770"
## [69] "hsa-mir-873" "hsa-mir-876" "hsa-mir-940"f15_10 = top_x_percent(fabia_15, perct = 10)## [1] "bicluster10"
## [1] "G6PD.RPPA" "RBM15.RPPA" "FASN.RPPA" "TSC1.RPPA"
## [5] "VHL.RPPA" "TFRC.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [9] "AKT2.R2Gn" "CDH2.R2Gn" "CTNNB1.R2Gn" "PIK3R1.R2Gn"
## [13] "GAPDH.R2Gn" "PXN.R2Gn" "RPTOR.R2Gn" "hsa-mir-1185-1"
## [17] "hsa-mir-1193" "hsa-mir-1197" "hsa-mir-1224" "hsa-mir-1258"
## [21] "hsa-mir-2114" "hsa-mir-3166" "hsa-mir-3199-1" "hsa-mir-320c-2"
## [25] "hsa-mir-323" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-376a-1"
## [29] "hsa-mir-377" "hsa-mir-380" "hsa-mir-3909" "hsa-mir-3922"
## [33] "hsa-mir-3923" "hsa-mir-3926-2" "hsa-mir-410" "hsa-mir-412"
## [37] "hsa-mir-431" "hsa-mir-432" "hsa-mir-466" "hsa-mir-487a"
## [41] "hsa-mir-487b" "hsa-mir-490" "hsa-mir-493" "hsa-mir-496"
## [45] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [49] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [53] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [57] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-541"
## [61] "hsa-mir-552" "hsa-mir-585" "hsa-mir-605" "hsa-mir-655"
## [65] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-767"
## [69] "hsa-mir-770" "hsa-mir-876" "hsa-mir-891a"
## [1] "bicluster9"
## [1] "G6PD.RPPA" "FASN.RPPA" "INPP4B.RPPA" "TTF1.RPPA"
## [5] "VHL.RPPA" "G6PD.R2Gn" "TGM2.R2Gn" "PIK3R1.R2Gn"
## [9] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [13] "hsa-mir-1269" "hsa-mir-127" "hsa-mir-134" "hsa-mir-136"
## [17] "hsa-mir-154" "hsa-mir-216b" "hsa-mir-299" "hsa-mir-323"
## [21] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337"
## [25] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [29] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [33] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-409"
## [37] "hsa-mir-410" "hsa-mir-411" "hsa-mir-412" "hsa-mir-431"
## [41] "hsa-mir-432" "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a"
## [45] "hsa-mir-487b" "hsa-mir-489" "hsa-mir-493" "hsa-mir-494"
## [49] "hsa-mir-495" "hsa-mir-496" "hsa-mir-507" "hsa-mir-510"
## [53] "hsa-mir-513a-2" "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1"
## [57] "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-520a" "hsa-mir-539"
## [61] "hsa-mir-541" "hsa-mir-543" "hsa-mir-577" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster13"
## [1] "G6PD.RPPA" "FASN.RPPA" "FN1.R2Gn" "TGM2.R2Gn"
## [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193" "hsa-mir-1197"
## [9] "hsa-mir-127" "hsa-mir-134" "hsa-mir-136" "hsa-mir-154"
## [13] "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [17] "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369" "hsa-mir-370"
## [21] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c"
## [25] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-381"
## [29] "hsa-mir-382" "hsa-mir-409" "hsa-mir-410" "hsa-mir-411"
## [33] "hsa-mir-412" "hsa-mir-431" "hsa-mir-432" "hsa-mir-433"
## [37] "hsa-mir-466" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b"
## [41] "hsa-mir-493" "hsa-mir-494" "hsa-mir-495" "hsa-mir-496"
## [45] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-2"
## [49] "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"
## [53] "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [57] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [61] "hsa-mir-539" "hsa-mir-541" "hsa-mir-543" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster2"
## [1] "G6PD.RPPA" "TTF1.RPPA" "G6PD.R2Gn" "ERBB3.R2Gn"
## [5] "CTNNB1.R2Gn" "TGM2.R2Gn" "CCND1.R2Gn" "SQSTM1.R2Gn"
## [9] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-124-1"
## [13] "hsa-mir-124-3" "hsa-mir-127" "hsa-mir-134" "hsa-mir-136"
## [17] "hsa-mir-154" "hsa-mir-206" "hsa-mir-299" "hsa-mir-3166"
## [21] "hsa-mir-3193" "hsa-mir-3199-1" "hsa-mir-323" "hsa-mir-323b"
## [25] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369"
## [29] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"
## [33] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379" "hsa-mir-380"
## [37] "hsa-mir-381" "hsa-mir-382" "hsa-mir-409" "hsa-mir-410"
## [41] "hsa-mir-411" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [45] "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b"
## [49] "hsa-mir-493" "hsa-mir-494" "hsa-mir-495" "hsa-mir-496"
## [53] "hsa-mir-516a-1" "hsa-mir-517a" "hsa-mir-518c" "hsa-mir-520a"
## [57] "hsa-mir-539" "hsa-mir-541" "hsa-mir-543" "hsa-mir-577"
## [61] "hsa-mir-580" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [65] "hsa-mir-665" "hsa-mir-668" "hsa-mir-670" "hsa-mir-758"
## [69] "hsa-mir-770" "hsa-mir-889" "hsa-mir-935"
## [1] "bicluster11"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "GATA3.RPPA" "G6PD.R2Gn"
## [5] "ERBB3.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn" "GATA3.R2Gn"
## [9] "CTNNB1.R2Gn" "CCND1.R2Gn" "RPTOR.R2Gn" "hsa-mir-1185-1"
## [13] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-124-1" "hsa-mir-124-3"
## [17] "hsa-mir-1258" "hsa-mir-1270-1" "hsa-mir-135b" "hsa-mir-154"
## [21] "hsa-mir-206" "hsa-mir-2114" "hsa-mir-296" "hsa-mir-3166"
## [25] "hsa-mir-3199-1" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [29] "hsa-mir-3655" "hsa-mir-370" "hsa-mir-376a-2" "hsa-mir-377"
## [33] "hsa-mir-380" "hsa-mir-382" "hsa-mir-3923" "hsa-mir-3926-2"
## [37] "hsa-mir-411" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494"
## [41] "hsa-mir-496" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [45] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [49] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [53] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [57] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a" "hsa-mir-519a-2"
## [61] "hsa-mir-520a" "hsa-mir-525" "hsa-mir-526b" "hsa-mir-541"
## [65] "hsa-mir-543" "hsa-mir-582" "hsa-mir-655" "hsa-mir-656"
## [69] "hsa-mir-668" "hsa-mir-887" "hsa-mir-889"
## [1] "bicluster1"
## [1] "G6PD.RPPA" "ERBB3.R2Gn" "CDH2.R2Gn" "TGM2.R2Gn"
## [5] "PRDX1.R2Gn" "hsa-mir-106a" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [9] "hsa-mir-1197" "hsa-mir-124-1" "hsa-mir-124-2" "hsa-mir-124-3"
## [13] "hsa-mir-127" "hsa-mir-1270-2" "hsa-mir-129-2" "hsa-mir-134"
## [17] "hsa-mir-136" "hsa-mir-137" "hsa-mir-138-1" "hsa-mir-154"
## [21] "hsa-mir-194-1" "hsa-mir-206" "hsa-mir-2114" "hsa-mir-296"
## [25] "hsa-mir-299" "hsa-mir-3144" "hsa-mir-3199-1" "hsa-mir-323"
## [29] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337"
## [33] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [37] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [41] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-409"
## [45] "hsa-mir-410" "hsa-mir-411" "hsa-mir-412" "hsa-mir-431"
## [49] "hsa-mir-432" "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a"
## [53] "hsa-mir-487b" "hsa-mir-493" "hsa-mir-494" "hsa-mir-495"
## [57] "hsa-mir-496" "hsa-mir-539" "hsa-mir-541" "hsa-mir-543"
## [61] "hsa-mir-577" "hsa-mir-580" "hsa-mir-582" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster12"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "GATA3.RPPA" "IGFBP2.R2Gn"
## [5] "FN1.R2Gn" "GATA3.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn"
## [9] "SNAI2.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-124-1"
## [13] "hsa-mir-124-3" "hsa-mir-1258" "hsa-mir-1269" "hsa-mir-134"
## [17] "hsa-mir-135b" "hsa-mir-136" "hsa-mir-154" "hsa-mir-183"
## [21] "hsa-mir-206" "hsa-mir-2114" "hsa-mir-296" "hsa-mir-299"
## [25] "hsa-mir-3144" "hsa-mir-3166" "hsa-mir-3191" "hsa-mir-3193"
## [29] "hsa-mir-3199-1" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [33] "hsa-mir-3655" "hsa-mir-3662" "hsa-mir-3690" "hsa-mir-370"
## [37] "hsa-mir-377" "hsa-mir-380" "hsa-mir-382" "hsa-mir-3923"
## [41] "hsa-mir-3926-2" "hsa-mir-411" "hsa-mir-429" "hsa-mir-485"
## [45] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-506" "hsa-mir-507"
## [49] "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3"
## [53] "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"
## [57] "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [61] "hsa-mir-514b" "hsa-mir-543" "hsa-mir-548q" "hsa-mir-577"
## [65] "hsa-mir-580" "hsa-mir-605" "hsa-mir-654" "hsa-mir-655"
## [69] "hsa-mir-656" "hsa-mir-668" "hsa-mir-935"
## [1] "bicluster7"
## [1] "PTEN.RPPA" "GATA3.RPPA" "TSC1.RPPA" "TFRC.RPPA"
## [5] "FN1.R2Gn" "AKT2.R2Gn" "CDH2.R2Gn" "GATA3.R2Gn"
## [9] "PEA15.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn" "hsa-mir-1185-1"
## [13] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-124-1" "hsa-mir-124-3"
## [17] "hsa-mir-1258" "hsa-mir-1269" "hsa-mir-135b" "hsa-mir-139"
## [21] "hsa-mir-154" "hsa-mir-183" "hsa-mir-184" "hsa-mir-196b"
## [25] "hsa-mir-206" "hsa-mir-2114" "hsa-mir-218-2" "hsa-mir-296"
## [29] "hsa-mir-3166" "hsa-mir-3193" "hsa-mir-3199-1" "hsa-mir-320c-2"
## [33] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-3655" "hsa-mir-3662"
## [37] "hsa-mir-376a-2" "hsa-mir-377" "hsa-mir-3923" "hsa-mir-3926-2"
## [41] "hsa-mir-411" "hsa-mir-429" "hsa-mir-433" "hsa-mir-485"
## [45] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-506" "hsa-mir-507"
## [49] "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3"
## [53] "hsa-mir-510" "hsa-mir-511-2" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [57] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [61] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-517a" "hsa-mir-543"
## [65] "hsa-mir-548q" "hsa-mir-577" "hsa-mir-582" "hsa-mir-655"
## [69] "hsa-mir-656" "hsa-mir-668" "hsa-mir-887"
## [1] "bicluster15"
## [1] "G6PD.RPPA" "RBM15.RPPA" "PTEN.RPPA" "FASN.RPPA"
## [5] "TSC1.RPPA" "TTF1.RPPA" "VHL.RPPA" "AR.RPPA"
## [9] "PRDX1.RPPA" "MSH6.RPPA" "G6PD.R2Gn" "AKT1S1.R2Gn"
## [13] "AKT2.R2Gn" "MET.R2Gn" "FASN.R2Gn" "CTNNB1.R2Gn"
## [17] "PRKCA.R2Gn" "STMN1.R2Gn" "TGM2.R2Gn" "PIK3R1.R2Gn"
## [21] "ANXA1.R2Gn" "PXN.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1258"
## [25] "hsa-mir-1291" "hsa-mir-130a" "hsa-mir-139" "hsa-mir-153-1"
## [29] "hsa-mir-196a-1" "hsa-mir-196a-2" "hsa-mir-196b" "hsa-mir-2114"
## [33] "hsa-mir-216b" "hsa-mir-218-1" "hsa-mir-3170" "hsa-mir-3173"
## [37] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-376a-2" "hsa-mir-377"
## [41] "hsa-mir-380" "hsa-mir-3926-2" "hsa-mir-3940" "hsa-mir-466"
## [45] "hsa-mir-487a" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [49] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [53] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [57] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [61] "hsa-mir-552" "hsa-mir-605" "hsa-mir-607" "hsa-mir-615"
## [65] "hsa-mir-653" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [69] "hsa-mir-770" "hsa-mir-873" "hsa-mir-876"
## [1] "bicluster8"
## [1] "G6PD.RPPA" "GAPDH.RPPA" "ERBB3.R2Gn" "FN1.R2Gn"
## [5] "AKT2.R2Gn" "BIRC2.R2Gn" "XRCC5.R2Gn" "ACACB.R2Gn"
## [9] "GAPDH.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn" "PARP1.R2Gn"
## [13] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-122"
## [17] "hsa-mir-1248" "hsa-mir-1269" "hsa-mir-127" "hsa-mir-136"
## [21] "hsa-mir-154" "hsa-mir-184" "hsa-mir-187" "hsa-mir-192"
## [25] "hsa-mir-194-1" "hsa-mir-194-2" "hsa-mir-2114" "hsa-mir-299"
## [29] "hsa-mir-3130-1" "hsa-mir-3170" "hsa-mir-323" "hsa-mir-323b"
## [33] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-370"
## [37] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376c" "hsa-mir-377"
## [41] "hsa-mir-380" "hsa-mir-382" "hsa-mir-3922" "hsa-mir-409"
## [45] "hsa-mir-410" "hsa-mir-411" "hsa-mir-412" "hsa-mir-431"
## [49] "hsa-mir-432" "hsa-mir-433" "hsa-mir-466" "hsa-mir-485"
## [53] "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-494" "hsa-mir-496"
## [57] "hsa-mir-517a" "hsa-mir-539" "hsa-mir-541" "hsa-mir-543"
## [61] "hsa-mir-548s" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [65] "hsa-mir-665" "hsa-mir-668" "hsa-mir-758" "hsa-mir-770"
## [69] "hsa-mir-887" "hsa-mir-889" "hsa-mir-939"
## [1] "bicluster3"
## [1] "PEA15.RPPA" "PDCD4.RPPA" "GAPDH.RPPA" "KDR.R2Gn"
## [5] "ERBB3.R2Gn" "FN1.R2Gn" "CDH2.R2Gn" "BECN1.R2Gn"
## [9] "GATA3.R2Gn" "BIRC2.R2Gn" "ADAR.R2Gn" "SERPINE1.R2Gn"
## [13] "STMN1.R2Gn" "TGM2.R2Gn" "CCND1.R2Gn" "PIK3R1.R2Gn"
## [17] "MYH9.R2Gn" "NDRG1.R2Gn" "ERRFI1.R2Gn" "PARP1.R2Gn"
## [21] "IDH3A.R2Gn" "hsa-mir-1185-1" "hsa-mir-1254" "hsa-mir-133b"
## [25] "hsa-mir-182" "hsa-mir-183" "hsa-mir-187" "hsa-mir-190b"
## [29] "hsa-mir-192" "hsa-mir-194-1" "hsa-mir-194-2" "hsa-mir-196b"
## [33] "hsa-mir-205" "hsa-mir-216b" "hsa-mir-3130-1" "hsa-mir-3170"
## [37] "hsa-mir-3191" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-3620"
## [41] "hsa-mir-376a-1" "hsa-mir-383" "hsa-mir-411" "hsa-mir-433"
## [45] "hsa-mir-499" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [49] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [53] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514b" "hsa-mir-516a-1"
## [57] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [61] "hsa-mir-518f" "hsa-mir-577" "hsa-mir-585" "hsa-mir-655"
## [65] "hsa-mir-656" "hsa-mir-665" "hsa-mir-767" "hsa-mir-887"
## [69] "hsa-mir-9-3" "hsa-mir-939" "hsa-mir-96"
## [1] "bicluster14"
## [1] "G6PD.RPPA" "ERBB3.R2Gn" "CTNNB1.R2Gn" "TGM2.R2Gn"
## [5] "CCND1.R2Gn" "PRDX1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [9] "hsa-mir-1197" "hsa-mir-1251" "hsa-mir-1269" "hsa-mir-127"
## [13] "hsa-mir-1270-2" "hsa-mir-134" "hsa-mir-135a-1" "hsa-mir-136"
## [17] "hsa-mir-138-1" "hsa-mir-138-2" "hsa-mir-154" "hsa-mir-187"
## [21] "hsa-mir-206" "hsa-mir-299" "hsa-mir-3166" "hsa-mir-3199-1"
## [25] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [29] "hsa-mir-337" "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1"
## [33] "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377"
## [37] "hsa-mir-379" "hsa-mir-380" "hsa-mir-381" "hsa-mir-382"
## [41] "hsa-mir-409" "hsa-mir-410" "hsa-mir-411" "hsa-mir-431"
## [45] "hsa-mir-432" "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a"
## [49] "hsa-mir-487b" "hsa-mir-488" "hsa-mir-493" "hsa-mir-494"
## [53] "hsa-mir-495" "hsa-mir-496" "hsa-mir-499" "hsa-mir-516a-1"
## [57] "hsa-mir-517a" "hsa-mir-520a" "hsa-mir-525" "hsa-mir-539"
## [61] "hsa-mir-541" "hsa-mir-543" "hsa-mir-577" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster5"
## [1] "ATM.RPPA" "EGFR.RPPA" "FASN.RPPA" "TTF1.RPPA"
## [5] "GAPDH.RPPA" "CDH2.R2Gn" "ADAR.R2Gn" "CTNNB1.R2Gn"
## [9] "MAPT.R2Gn" "TGM2.R2Gn" "GAPDH.R2Gn" "HSPA1A.R2Gn"
## [13] "SYP.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"
## [17] "hsa-mir-1197" "hsa-mir-1269" "hsa-mir-127" "hsa-mir-1291"
## [21] "hsa-mir-134" "hsa-mir-136" "hsa-mir-154" "hsa-mir-200a"
## [25] "hsa-mir-200b" "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b"
## [29] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-369" "hsa-mir-370"
## [33] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c"
## [37] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-381"
## [41] "hsa-mir-382" "hsa-mir-3909" "hsa-mir-409" "hsa-mir-410"
## [45] "hsa-mir-411" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [49] "hsa-mir-433" "hsa-mir-452" "hsa-mir-466" "hsa-mir-485"
## [53] "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-494" "hsa-mir-495"
## [57] "hsa-mir-496" "hsa-mir-499" "hsa-mir-539" "hsa-mir-541"
## [61] "hsa-mir-543" "hsa-mir-548q" "hsa-mir-548v" "hsa-mir-580"
## [65] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster6"
## [1] "G6PD.RPPA" "RBM15.RPPA" "ATM.RPPA" "FASN.RPPA"
## [5] "INPP4B.RPPA" "ACVRL1.RPPA" "PRDX1.RPPA" "MSH6.RPPA"
## [9] "TFRC.RPPA" "PREX1.RPPA" "CDH2.R2Gn" "ADAR.R2Gn"
## [13] "FASN.R2Gn" "EEF2.R2Gn" "RPS6.R2Gn" "PRKCA.R2Gn"
## [17] "STMN1.R2Gn" "STAT3.R2Gn" "CDK1.R2Gn" "CTNNA1.R2Gn"
## [21] "PIK3R1.R2Gn" "TYMS.R2Gn" "CCNB1.R2Gn" "YWHAB.R2Gn"
## [25] "HSPA1A.R2Gn" "PXN.R2Gn" "ERRFI1.R2Gn" "PREX1.R2Gn"
## [29] "RET.R2Gn" "hsa-mir-105-2" "hsa-mir-1193" "hsa-mir-124-1"
## [33] "hsa-mir-124-3" "hsa-mir-1249" "hsa-mir-1255a" "hsa-mir-1258"
## [37] "hsa-mir-1292" "hsa-mir-135a-1" "hsa-mir-135b" "hsa-mir-137"
## [41] "hsa-mir-138-1" "hsa-mir-153-2" "hsa-mir-216a" "hsa-mir-26a-1"
## [45] "hsa-mir-29b-1" "hsa-mir-29b-2" "hsa-mir-29c" "hsa-mir-3166"
## [49] "hsa-mir-3191" "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-329-2"
## [53] "hsa-mir-3652" "hsa-mir-3912" "hsa-mir-3922" "hsa-mir-3923"
## [57] "hsa-mir-3926-2" "hsa-mir-3934" "hsa-mir-466" "hsa-mir-510"
## [61] "hsa-mir-511-1" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-544"
## [65] "hsa-mir-548j" "hsa-mir-585" "hsa-mir-592" "hsa-mir-605"
## [69] "hsa-mir-653" "hsa-mir-760" "hsa-mir-767"
## [1] "bicluster4"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "GATA3.RPPA" "PDCD4.RPPA"
## [5] "GAPDH.RPPA" "MYH11.RPPA" "ERCC1.RPPA" "PREX1.RPPA"
## [9] "G6PD.R2Gn" "IGFBP2.R2Gn" "EEF2.R2Gn" "SERPINE1.R2Gn"
## [13] "PCNA.R2Gn" "RPS6.R2Gn" "PIK3R1.R2Gn" "GAPDH.R2Gn"
## [17] "GAB2.R2Gn" "PXN.R2Gn" "SYP.R2Gn" "hsa-let-7c"
## [21] "hsa-mir-105-1" "hsa-mir-105-2" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [25] "hsa-mir-1224" "hsa-mir-1249" "hsa-mir-125b-1" "hsa-mir-125b-2"
## [29] "hsa-mir-1270-2" "hsa-mir-182" "hsa-mir-183" "hsa-mir-204"
## [33] "hsa-mir-216b" "hsa-mir-217" "hsa-mir-218-1" "hsa-mir-326"
## [37] "hsa-mir-329-2" "hsa-mir-346" "hsa-mir-34b" "hsa-mir-3682"
## [41] "hsa-mir-380" "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-3940"
## [45] "hsa-mir-433" "hsa-mir-455" "hsa-mir-466" "hsa-mir-487a"
## [49] "hsa-mir-488" "hsa-mir-489" "hsa-mir-494" "hsa-mir-508"
## [53] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-518f"
## [57] "hsa-mir-548q" "hsa-mir-561" "hsa-mir-570" "hsa-mir-585"
## [61] "hsa-mir-627" "hsa-mir-642a" "hsa-mir-655" "hsa-mir-670"
## [65] "hsa-mir-767" "hsa-mir-873" "hsa-mir-876" "hsa-mir-891a"
## [69] "hsa-mir-939" "hsa-mir-96" "hsa-mir-99a"f20_10 = top_x_percent(fabia_20, perct = 10)## [1] "bicluster10"
## [1] "G6PD.RPPA" "RBM15.RPPA" "PTEN.RPPA" "ATM.RPPA"
## [5] "FASN.RPPA" "TSC1.RPPA" "TTF1.RPPA" "VHL.RPPA"
## [9] "PRDX1.RPPA" "GAPDH.RPPA" "MSH6.RPPA" "TFRC.RPPA"
## [13] "PREX1.RPPA" "FN1.R2Gn" "XRCC5.R2Gn" "CTNNB1.R2Gn"
## [17] "YBX1.R2Gn" "PRKCA.R2Gn" "STMN1.R2Gn" "PIK3R1.R2Gn"
## [21] "GAPDH.R2Gn" "ANXA1.R2Gn" "HSPA1A.R2Gn" "PXN.R2Gn"
## [25] "hsa-mir-105-1" "hsa-mir-105-2" "hsa-mir-1185-1" "hsa-mir-1224"
## [29] "hsa-mir-1258" "hsa-mir-135b" "hsa-mir-199a-1" "hsa-mir-199a-2"
## [33] "hsa-mir-199b" "hsa-mir-2114" "hsa-mir-214" "hsa-mir-3166"
## [37] "hsa-mir-320c-2" "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-376a-1"
## [41] "hsa-mir-3909" "hsa-mir-3922" "hsa-mir-3923" "hsa-mir-3926-2"
## [45] "hsa-mir-3940" "hsa-mir-466" "hsa-mir-490" "hsa-mir-493"
## [49] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [53] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [57] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [61] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-585"
## [65] "hsa-mir-605" "hsa-mir-653" "hsa-mir-656" "hsa-mir-665"
## [69] "hsa-mir-767" "hsa-mir-770" "hsa-mir-876"
## [1] "bicluster9"
## [1] "G6PD.RPPA" "FASN.RPPA" "INPP4B.RPPA" "TTF1.RPPA"
## [5] "VHL.RPPA" "PRDX1.RPPA" "G6PD.R2Gn" "TGM2.R2Gn"
## [9] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [13] "hsa-mir-1269" "hsa-mir-127" "hsa-mir-134" "hsa-mir-136"
## [17] "hsa-mir-154" "hsa-mir-206" "hsa-mir-216b" "hsa-mir-299"
## [21] "hsa-mir-3199-1" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [25] "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369" "hsa-mir-370"
## [29] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c"
## [33] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-381"
## [37] "hsa-mir-382" "hsa-mir-409" "hsa-mir-410" "hsa-mir-411"
## [41] "hsa-mir-412" "hsa-mir-431" "hsa-mir-432" "hsa-mir-433"
## [45] "hsa-mir-452" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b"
## [49] "hsa-mir-489" "hsa-mir-493" "hsa-mir-494" "hsa-mir-495"
## [53] "hsa-mir-496" "hsa-mir-516a-1" "hsa-mir-516b-1" "hsa-mir-517a"
## [57] "hsa-mir-518b" "hsa-mir-520a" "hsa-mir-539" "hsa-mir-541"
## [61] "hsa-mir-543" "hsa-mir-577" "hsa-mir-654" "hsa-mir-655"
## [65] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-758"
## [69] "hsa-mir-770" "hsa-mir-876" "hsa-mir-889"
## [1] "bicluster19"
## [1] "G6PD.RPPA" "INPP4B.RPPA" "FN1.R2Gn" "ADAR.R2Gn"
## [5] "CTNNB1.R2Gn" "TGM2.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [9] "hsa-mir-1197" "hsa-mir-127" "hsa-mir-133b" "hsa-mir-134"
## [13] "hsa-mir-136" "hsa-mir-154" "hsa-mir-205" "hsa-mir-206"
## [17] "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [21] "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369" "hsa-mir-370"
## [25] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c"
## [29] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-381"
## [33] "hsa-mir-382" "hsa-mir-409" "hsa-mir-410" "hsa-mir-411"
## [37] "hsa-mir-412" "hsa-mir-431" "hsa-mir-432" "hsa-mir-433"
## [41] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-489"
## [45] "hsa-mir-493" "hsa-mir-494" "hsa-mir-495" "hsa-mir-496"
## [49] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"
## [53] "hsa-mir-518b" "hsa-mir-518c" "hsa-mir-518f" "hsa-mir-519a-2"
## [57] "hsa-mir-520a" "hsa-mir-525" "hsa-mir-526b" "hsa-mir-539"
## [61] "hsa-mir-541" "hsa-mir-543" "hsa-mir-577" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster1"
## [1] "G6PD.RPPA" "FASN.RPPA" "INPP4B.RPPA" "TTF1.RPPA"
## [5] "G6PD.R2Gn" "CDH2.R2Gn" "CTNNB1.R2Gn" "TGM2.R2Gn"
## [9] "SQSTM1.R2Gn" "hsa-mir-106a" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [13] "hsa-mir-1193" "hsa-mir-1197" "hsa-mir-124-1" "hsa-mir-124-3"
## [17] "hsa-mir-127" "hsa-mir-1270-2" "hsa-mir-134" "hsa-mir-135a-1"
## [21] "hsa-mir-136" "hsa-mir-137" "hsa-mir-138-1" "hsa-mir-154"
## [25] "hsa-mir-299" "hsa-mir-3193" "hsa-mir-3199-1" "hsa-mir-323"
## [29] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337"
## [33] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [37] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [41] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-409"
## [45] "hsa-mir-410" "hsa-mir-411" "hsa-mir-412" "hsa-mir-431"
## [49] "hsa-mir-432" "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a"
## [53] "hsa-mir-487b" "hsa-mir-493" "hsa-mir-494" "hsa-mir-495"
## [57] "hsa-mir-496" "hsa-mir-517a" "hsa-mir-539" "hsa-mir-541"
## [61] "hsa-mir-543" "hsa-mir-577" "hsa-mir-580" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster2"
## [1] "FASN.RPPA" "TTF1.RPPA" "TGM2.R2Gn" "PIK3R1.R2Gn"
## [5] "BCL2L1.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [9] "hsa-mir-1197" "hsa-mir-124-1" "hsa-mir-124-3" "hsa-mir-127"
## [13] "hsa-mir-134" "hsa-mir-136" "hsa-mir-154" "hsa-mir-206"
## [17] "hsa-mir-299" "hsa-mir-3173" "hsa-mir-3193" "hsa-mir-323"
## [21] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337"
## [25] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [29] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [33] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-409"
## [37] "hsa-mir-410" "hsa-mir-411" "hsa-mir-412" "hsa-mir-431"
## [41] "hsa-mir-432" "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a"
## [45] "hsa-mir-487b" "hsa-mir-489" "hsa-mir-494" "hsa-mir-495"
## [49] "hsa-mir-496" "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a"
## [53] "hsa-mir-518b" "hsa-mir-518c" "hsa-mir-520a" "hsa-mir-526b"
## [57] "hsa-mir-539" "hsa-mir-541" "hsa-mir-543" "hsa-mir-580"
## [61] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-663"
## [65] "hsa-mir-665" "hsa-mir-668" "hsa-mir-670" "hsa-mir-758"
## [69] "hsa-mir-770" "hsa-mir-873" "hsa-mir-889"
## [1] "bicluster16"
## [1] "GATA3.RPPA" "FASN.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [5] "PRDX1.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn" "hsa-mir-1185-1"
## [9] "hsa-mir-1185-2" "hsa-mir-1193" "hsa-mir-1197" "hsa-mir-1245"
## [13] "hsa-mir-127" "hsa-mir-1270-1" "hsa-mir-136" "hsa-mir-154"
## [17] "hsa-mir-200b" "hsa-mir-2114" "hsa-mir-323" "hsa-mir-323b"
## [21] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-369" "hsa-mir-370"
## [25] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c"
## [29] "hsa-mir-377" "hsa-mir-380" "hsa-mir-382" "hsa-mir-3909"
## [33] "hsa-mir-3922" "hsa-mir-409" "hsa-mir-410" "hsa-mir-412"
## [37] "hsa-mir-431" "hsa-mir-432" "hsa-mir-433" "hsa-mir-466"
## [41] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-488"
## [45] "hsa-mir-493" "hsa-mir-495" "hsa-mir-496" "hsa-mir-506"
## [49] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [53] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [57] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [61] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-539" "hsa-mir-541"
## [65] "hsa-mir-585" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [69] "hsa-mir-668" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster17"
## [1] "G6PD.RPPA" "RBM15.RPPA" "PTEN.RPPA" "GATA3.RPPA"
## [5] "PEA15.RPPA" "FASN.RPPA" "TSC1.RPPA" "PDCD4.RPPA"
## [9] "VHL.RPPA" "PREX1.RPPA" "AKT1S1.R2Gn" "FN1.R2Gn"
## [13] "AKT2.R2Gn" "CDH2.R2Gn" "PTEN.R2Gn" "GATA3.R2Gn"
## [17] "PEA15.R2Gn" "ADAR.R2Gn" "SERPINE1.R2Gn" "CTNNB1.R2Gn"
## [21] "SHC1.R2Gn" "CTNNA1.R2Gn" "CCND1.R2Gn" "PIK3R1.R2Gn"
## [25] "PXN.R2Gn" "RPTOR.R2Gn" "hsa-mir-124-3" "hsa-mir-1249"
## [29] "hsa-mir-1258" "hsa-mir-1291" "hsa-mir-135b" "hsa-mir-139"
## [33] "hsa-mir-182" "hsa-mir-183" "hsa-mir-196b" "hsa-mir-2114"
## [37] "hsa-mir-216b" "hsa-mir-218-1" "hsa-mir-3166" "hsa-mir-3199-1"
## [41] "hsa-mir-320c-2" "hsa-mir-329-2" "hsa-mir-3655" "hsa-mir-3909"
## [45] "hsa-mir-3923" "hsa-mir-3926-2" "hsa-mir-466" "hsa-mir-506"
## [49] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [53] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [57] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [61] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-548b" "hsa-mir-552"
## [65] "hsa-mir-605" "hsa-mir-665" "hsa-mir-760" "hsa-mir-767"
## [69] "hsa-mir-770" "hsa-mir-876" "hsa-mir-887"
## [1] "bicluster15"
## [1] "G6PD.RPPA" "RBM15.RPPA" "FASN.RPPA" "TSC1.RPPA"
## [5] "TTF1.RPPA" "VHL.RPPA" "PRDX1.RPPA" "MET.R2Gn"
## [9] "TGM2.R2Gn" "PIK3R1.R2Gn" "ANXA1.R2Gn" "PXN.R2Gn"
## [13] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [17] "hsa-mir-1258" "hsa-mir-127" "hsa-mir-134" "hsa-mir-136"
## [21] "hsa-mir-154" "hsa-mir-196a-2" "hsa-mir-2114" "hsa-mir-218-1"
## [25] "hsa-mir-3173" "hsa-mir-323" "hsa-mir-329-1" "hsa-mir-329-2"
## [29] "hsa-mir-337" "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1"
## [33] "hsa-mir-376a-2" "hsa-mir-377" "hsa-mir-380" "hsa-mir-382"
## [37] "hsa-mir-3940" "hsa-mir-432" "hsa-mir-466" "hsa-mir-487a"
## [41] "hsa-mir-487b" "hsa-mir-489" "hsa-mir-494" "hsa-mir-496"
## [45] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [49] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [53] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [57] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-541"
## [61] "hsa-mir-605" "hsa-mir-615" "hsa-mir-653" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-770" "hsa-mir-873" "hsa-mir-876"
## [1] "bicluster13"
## [1] "FASN.RPPA" "FN1.R2Gn" "TGM2.R2Gn" "COL6A1.R2Gn"
## [5] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"
## [9] "hsa-mir-1197" "hsa-mir-127" "hsa-mir-134" "hsa-mir-136"
## [13] "hsa-mir-154" "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b"
## [17] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-369" "hsa-mir-370"
## [21] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c"
## [25] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-381"
## [29] "hsa-mir-382" "hsa-mir-3922" "hsa-mir-409" "hsa-mir-410"
## [33] "hsa-mir-411" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [37] "hsa-mir-433" "hsa-mir-466" "hsa-mir-485" "hsa-mir-487a"
## [41] "hsa-mir-487b" "hsa-mir-494" "hsa-mir-496" "hsa-mir-506"
## [45] "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3"
## [49] "hsa-mir-510" "hsa-mir-511-1" "hsa-mir-511-2" "hsa-mir-513a-1"
## [53] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [57] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-518b" "hsa-mir-539"
## [61] "hsa-mir-541" "hsa-mir-543" "hsa-mir-605" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster7"
## [1] "GATA3.RPPA" "EGFR.RPPA" "TSC1.RPPA" "TFRC.RPPA"
## [5] "FN1.R2Gn" "CDH2.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn"
## [9] "RPTOR.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [13] "hsa-mir-124-1" "hsa-mir-124-3" "hsa-mir-1269" "hsa-mir-127"
## [17] "hsa-mir-135b" "hsa-mir-139" "hsa-mir-154" "hsa-mir-206"
## [21] "hsa-mir-2114" "hsa-mir-296" "hsa-mir-3166" "hsa-mir-3199-1"
## [25] "hsa-mir-320c-2" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [29] "hsa-mir-3655" "hsa-mir-3690" "hsa-mir-370" "hsa-mir-376a-2"
## [33] "hsa-mir-377" "hsa-mir-380" "hsa-mir-382" "hsa-mir-3923"
## [37] "hsa-mir-3926-2" "hsa-mir-411" "hsa-mir-429" "hsa-mir-433"
## [41] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494" "hsa-mir-506"
## [45] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [49] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [53] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [57] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-517a" "hsa-mir-518b"
## [61] "hsa-mir-541" "hsa-mir-543" "hsa-mir-548j" "hsa-mir-548q"
## [65] "hsa-mir-577" "hsa-mir-580" "hsa-mir-582" "hsa-mir-655"
## [69] "hsa-mir-656" "hsa-mir-668" "hsa-mir-887"
## [1] "bicluster20"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "VHL.RPPA" "GAPDH.RPPA"
## [5] "MSH6.RPPA" "ERBB3.R2Gn" "FN1.R2Gn" "GATA3.R2Gn"
## [9] "EIF4G1.R2Gn" "STMN1.R2Gn" "CDK1.R2Gn" "E2F1.R2Gn"
## [13] "MYC.R2Gn" "CCND1.R2Gn" "GAPDH.R2Gn" "TYMS.R2Gn"
## [17] "CCNB1.R2Gn" "TUBA1B.R2Gn" "FOXM1.R2Gn" "YWHAB.R2Gn"
## [21] "EZH2.R2Gn" "ERRFI1.R2Gn" "CDKN2A.R2Gn" "hsa-mir-1185-1"
## [25] "hsa-mir-1185-2" "hsa-mir-1247" "hsa-mir-1248" "hsa-mir-1296"
## [29] "hsa-mir-135b" "hsa-mir-136" "hsa-mir-154" "hsa-mir-187"
## [33] "hsa-mir-218-2" "hsa-mir-296" "hsa-mir-29c" "hsa-mir-3144"
## [37] "hsa-mir-3170" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-372"
## [41] "hsa-mir-377" "hsa-mir-3923" "hsa-mir-3926-1" "hsa-mir-3926-2"
## [45] "hsa-mir-411" "hsa-mir-429" "hsa-mir-485" "hsa-mir-487a"
## [49] "hsa-mir-494" "hsa-mir-496" "hsa-mir-506" "hsa-mir-507"
## [53] "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3"
## [57] "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"
## [61] "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [65] "hsa-mir-514b" "hsa-mir-543" "hsa-mir-548q" "hsa-mir-655"
## [69] "hsa-mir-656" "hsa-mir-668" "hsa-mir-887"
## [1] "bicluster12"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "GATA3.RPPA" "FASN.RPPA"
## [5] "MSH6.RPPA" "TFRC.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn"
## [9] "CDKN1A.R2Gn" "GATA3.R2Gn" "EEF2.R2Gn" "CTNNB1.R2Gn"
## [13] "STMN1.R2Gn" "CDK1.R2Gn" "CCND1.R2Gn" "FOXM1.R2Gn"
## [17] "HSPA1A.R2Gn" "SNAI2.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [21] "hsa-mir-124-3" "hsa-mir-1258" "hsa-mir-1269" "hsa-mir-133b"
## [25] "hsa-mir-135b" "hsa-mir-183" "hsa-mir-206" "hsa-mir-2114"
## [29] "hsa-mir-29c" "hsa-mir-31" "hsa-mir-3144" "hsa-mir-3166"
## [33] "hsa-mir-3191" "hsa-mir-3193" "hsa-mir-3199-1" "hsa-mir-320c-2"
## [37] "hsa-mir-3655" "hsa-mir-3662" "hsa-mir-3690" "hsa-mir-3909"
## [41] "hsa-mir-3923" "hsa-mir-3926-2" "hsa-mir-3934" "hsa-mir-411"
## [45] "hsa-mir-429" "hsa-mir-466" "hsa-mir-485" "hsa-mir-487a"
## [49] "hsa-mir-494" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [53] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [57] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [61] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [65] "hsa-mir-548q" "hsa-mir-580" "hsa-mir-605" "hsa-mir-655"
## [69] "hsa-mir-656" "hsa-mir-675" "hsa-mir-935"
## [1] "bicluster11"
## [1] "G6PD.RPPA" "GATA3.RPPA" "EGFR.RPPA" "INPP4B.RPPA"
## [5] "PDCD4.RPPA" "G6PD.R2Gn" "ERBB3.R2Gn" "CDH2.R2Gn"
## [9] "GATA3.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn" "PIK3R1.R2Gn"
## [13] "RPTOR.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-124-3"
## [17] "hsa-mir-1258" "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-1270-2"
## [21] "hsa-mir-135b" "hsa-mir-138-1" "hsa-mir-154" "hsa-mir-183"
## [25] "hsa-mir-187" "hsa-mir-206" "hsa-mir-2114" "hsa-mir-3166"
## [29] "hsa-mir-3187" "hsa-mir-3199-1" "hsa-mir-323b" "hsa-mir-329-1"
## [33] "hsa-mir-3655" "hsa-mir-376a-2" "hsa-mir-377" "hsa-mir-380"
## [37] "hsa-mir-3926-2" "hsa-mir-411" "hsa-mir-429" "hsa-mir-485"
## [41] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-506" "hsa-mir-507"
## [45] "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3"
## [49] "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"
## [53] "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [57] "hsa-mir-514b" "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a"
## [61] "hsa-mir-518b" "hsa-mir-518c" "hsa-mir-519a-2" "hsa-mir-520a"
## [65] "hsa-mir-525" "hsa-mir-543" "hsa-mir-580" "hsa-mir-655"
## [69] "hsa-mir-656" "hsa-mir-668" "hsa-mir-887"
## [1] "bicluster14"
## [1] "G6PD.RPPA" "ATM.RPPA" "PDCD4.RPPA" "GAPDH.RPPA"
## [5] "G6PD.R2Gn" "ERBB3.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn"
## [9] "ACVRL1.R2Gn" "CTNNB1.R2Gn" "ANLN.R2Gn" "FOXO3.R2Gn"
## [13] "RAB11A.R2Gn" "CDK1.R2Gn" "PRDX1.R2Gn" "GAPDH.R2Gn"
## [17] "CCNB1.R2Gn" "COL6A1.R2Gn" "hsa-mir-105-1" "hsa-mir-105-2"
## [21] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1269" "hsa-mir-1270-1"
## [25] "hsa-mir-1270-2" "hsa-mir-1293" "hsa-mir-1305" "hsa-mir-135a-1"
## [29] "hsa-mir-138-1" "hsa-mir-199a-1" "hsa-mir-199a-2" "hsa-mir-199b"
## [33] "hsa-mir-200a" "hsa-mir-200b" "hsa-mir-214" "hsa-mir-216b"
## [37] "hsa-mir-221" "hsa-mir-222" "hsa-mir-2277" "hsa-mir-3130-1"
## [41] "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-329-1" "hsa-mir-329-2"
## [45] "hsa-mir-337" "hsa-mir-3677" "hsa-mir-3690" "hsa-mir-377"
## [49] "hsa-mir-3926-1" "hsa-mir-411" "hsa-mir-433" "hsa-mir-485"
## [53] "hsa-mir-487a" "hsa-mir-488" "hsa-mir-494" "hsa-mir-499"
## [57] "hsa-mir-511-2" "hsa-mir-517a" "hsa-mir-543" "hsa-mir-548b"
## [61] "hsa-mir-548q" "hsa-mir-552" "hsa-mir-577" "hsa-mir-655"
## [65] "hsa-mir-665" "hsa-mir-668" "hsa-mir-767" "hsa-mir-873"
## [69] "hsa-mir-876" "hsa-mir-887" "hsa-mir-940"
## [1] "bicluster18"
## [1] "RBM15.RPPA" "GATA3.RPPA" "FASN.RPPA" "VHL.RPPA"
## [5] "GAPDH.RPPA" "CDKN1B.R2Gn" "ERBB3.R2Gn" "AKT1S1.R2Gn"
## [9] "BECN1.R2Gn" "GATA3.R2Gn" "EIF4G1.R2Gn" "ADAR.R2Gn"
## [13] "EEF2.R2Gn" "RPS6.R2Gn" "CDH3.R2Gn" "TGM2.R2Gn"
## [17] "MS4A1.R2Gn" "XRCC1.R2Gn" "CCND1.R2Gn" "XBP1.R2Gn"
## [21] "GAPDH.R2Gn" "MYH9.R2Gn" "RAB25.R2Gn" "ERCC1.R2Gn"
## [25] "BID.R2Gn" "TFRC.R2Gn" "HSPA1A.R2Gn" "PXN.R2Gn"
## [29] "ERRFI1.R2Gn" "PARP1.R2Gn" "NAPSA.R2Gn" "TFF1.R2Gn"
## [33] "CDKN2A.R2Gn" "KCNJ13.R2Gn" "hsa-mir-124-3" "hsa-mir-1249"
## [37] "hsa-mir-1258" "hsa-mir-1262" "hsa-mir-187" "hsa-mir-196b"
## [41] "hsa-mir-206" "hsa-mir-216b" "hsa-mir-296" "hsa-mir-3130-1"
## [45] "hsa-mir-3170" "hsa-mir-383" "hsa-mir-3926-2" "hsa-mir-506"
## [49] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [53] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-511-2" "hsa-mir-513a-1"
## [57] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [61] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-516b-1"
## [65] "hsa-mir-518b" "hsa-mir-548q" "hsa-mir-643" "hsa-mir-760"
## [69] "hsa-mir-887" "hsa-mir-9-3" "hsa-mir-935"
## [1] "bicluster5"
## [1] "ATM.RPPA" "EGFR.RPPA" "GAPDH.RPPA" "ERBB3.R2Gn"
## [5] "CDH2.R2Gn" "PEA15.R2Gn" "ADAR.R2Gn" "CTNNB1.R2Gn"
## [9] "SHC1.R2Gn" "TGM2.R2Gn" "GAPDH.R2Gn" "ERRFI1.R2Gn"
## [13] "SYP.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"
## [17] "hsa-mir-1197" "hsa-mir-1269" "hsa-mir-127" "hsa-mir-1293"
## [21] "hsa-mir-134" "hsa-mir-136" "hsa-mir-154" "hsa-mir-199a-1"
## [25] "hsa-mir-199a-2" "hsa-mir-200a" "hsa-mir-200b" "hsa-mir-214"
## [29] "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [33] "hsa-mir-329-2" "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1"
## [37] "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377"
## [41] "hsa-mir-379" "hsa-mir-380" "hsa-mir-381" "hsa-mir-382"
## [45] "hsa-mir-409" "hsa-mir-410" "hsa-mir-411" "hsa-mir-429"
## [49] "hsa-mir-432" "hsa-mir-433" "hsa-mir-452" "hsa-mir-485"
## [53] "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-494" "hsa-mir-495"
## [57] "hsa-mir-496" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-518b"
## [61] "hsa-mir-539" "hsa-mir-541" "hsa-mir-543" "hsa-mir-548v"
## [65] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster6"
## [1] "G6PD.RPPA" "RBM15.RPPA" "ATM.RPPA" "FASN.RPPA"
## [5] "INPP4B.RPPA" "VHL.RPPA" "PRDX1.RPPA" "XBP1.RPPA"
## [9] "MSH6.RPPA" "TFRC.RPPA" "PREX1.RPPA" "G6PD.R2Gn"
## [13] "FN1.R2Gn" "CDH2.R2Gn" "EIF4G1.R2Gn" "EEF2.R2Gn"
## [17] "SERPINE1.R2Gn" "PRKCA.R2Gn" "CTNNA1.R2Gn" "PIK3R1.R2Gn"
## [21] "NDRG1.R2Gn" "YWHAB.R2Gn" "HSPA1A.R2Gn" "PXN.R2Gn"
## [25] "SNAI2.R2Gn" "PREX1.R2Gn" "RET.R2Gn" "SQSTM1.R2Gn"
## [29] "hsa-mir-1248" "hsa-mir-1258" "hsa-mir-135b" "hsa-mir-137"
## [33] "hsa-mir-138-1" "hsa-mir-196b" "hsa-mir-199a-1" "hsa-mir-199a-2"
## [37] "hsa-mir-199b" "hsa-mir-214" "hsa-mir-218-1" "hsa-mir-3166"
## [41] "hsa-mir-3170" "hsa-mir-320c-2" "hsa-mir-335" "hsa-mir-3912"
## [45] "hsa-mir-3923" "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-3934"
## [49] "hsa-mir-3940" "hsa-mir-466" "hsa-mir-483" "hsa-mir-506"
## [53] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [57] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [61] "hsa-mir-513b" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [65] "hsa-mir-552" "hsa-mir-605" "hsa-mir-615" "hsa-mir-765"
## [69] "hsa-mir-767" "hsa-mir-873" "hsa-mir-876"
## [1] "bicluster3"
## [1] "IGFBP2.RPPA" "PEA15.RPPA" "PDCD4.RPPA" "ERBB3.R2Gn"
## [5] "IGFBP2.R2Gn" "FN1.R2Gn" "CDH2.R2Gn" "PEA15.R2Gn"
## [9] "ITGA2.R2Gn" "ADAR.R2Gn" "SERPINE1.R2Gn" "SHC1.R2Gn"
## [13] "TGM2.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [17] "hsa-mir-127" "hsa-mir-133b" "hsa-mir-154" "hsa-mir-205"
## [21] "hsa-mir-206" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [25] "hsa-mir-329-2" "hsa-mir-3620" "hsa-mir-3678" "hsa-mir-370"
## [29] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c"
## [33] "hsa-mir-377" "hsa-mir-380" "hsa-mir-381" "hsa-mir-382"
## [37] "hsa-mir-409" "hsa-mir-410" "hsa-mir-411" "hsa-mir-431"
## [41] "hsa-mir-432" "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a"
## [45] "hsa-mir-487b" "hsa-mir-494" "hsa-mir-496" "hsa-mir-516a-1"
## [49] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [53] "hsa-mir-518c" "hsa-mir-518f" "hsa-mir-519a-1" "hsa-mir-519a-2"
## [57] "hsa-mir-520a" "hsa-mir-525" "hsa-mir-526b" "hsa-mir-539"
## [61] "hsa-mir-541" "hsa-mir-543" "hsa-mir-654" "hsa-mir-655"
## [65] "hsa-mir-656" "hsa-mir-668" "hsa-mir-7-2" "hsa-mir-7-3"
## [69] "hsa-mir-765" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster8"
## [1] "IGFBP2.RPPA" "ASNS.RPPA" "PTEN.RPPA" "PEA15.RPPA"
## [5] "MYH11.RPPA" "ERCC1.RPPA" "TFRC.RPPA" "KDR.R2Gn"
## [9] "ERBB3.R2Gn" "FN1.R2Gn" "AKT2.R2Gn" "CDH2.R2Gn"
## [13] "EIF4G1.R2Gn" "SERPINE1.R2Gn" "PDCD4.R2Gn" "TP63.R2Gn"
## [17] "GAPDH.R2Gn" "KRT5.R2Gn" "YWHAB.R2Gn" "ERRFI1.R2Gn"
## [21] "CHGA.R2Gn" "hsa-mir-100" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [25] "hsa-mir-1193" "hsa-mir-1197" "hsa-mir-122" "hsa-mir-1245"
## [29] "hsa-mir-1248" "hsa-mir-1293" "hsa-mir-135a-1" "hsa-mir-135b"
## [33] "hsa-mir-141" "hsa-mir-146b" "hsa-mir-184" "hsa-mir-194-2"
## [37] "hsa-mir-199a-1" "hsa-mir-199a-2" "hsa-mir-199b" "hsa-mir-206"
## [41] "hsa-mir-2114" "hsa-mir-214" "hsa-mir-30c-1" "hsa-mir-3170"
## [45] "hsa-mir-3173" "hsa-mir-320c-2" "hsa-mir-323" "hsa-mir-323b"
## [49] "hsa-mir-329-2" "hsa-mir-3678" "hsa-mir-376a-1" "hsa-mir-376b"
## [53] "hsa-mir-377" "hsa-mir-380" "hsa-mir-3926-1" "hsa-mir-466"
## [57] "hsa-mir-487a" "hsa-mir-496" "hsa-mir-511-2" "hsa-mir-541"
## [61] "hsa-mir-548s" "hsa-mir-552" "hsa-mir-592" "hsa-mir-627"
## [65] "hsa-mir-656" "hsa-mir-663" "hsa-mir-668" "hsa-mir-765"
## [69] "hsa-mir-770" "hsa-mir-891a" "hsa-mir-9-3"
## [1] "bicluster4"
## [1] "G6PD.RPPA" "PEA15.RPPA" "MYH11.RPPA" "TFRC.RPPA"
## [5] "PREX1.RPPA" "G6PD.R2Gn" "FN1.R2Gn" "ADAR.R2Gn"
## [9] "EEF2.R2Gn" "RPS6.R2Gn" "PTK2.R2Gn" "KEAP1.R2Gn"
## [13] "CCND1.R2Gn" "SNAI2.R2Gn" "hsa-mir-105-1" "hsa-mir-1185-1"
## [17] "hsa-mir-1185-2" "hsa-mir-1248" "hsa-mir-1249" "hsa-mir-1269"
## [21] "hsa-mir-127" "hsa-mir-1270-2" "hsa-mir-1274b" "hsa-mir-134"
## [25] "hsa-mir-135b" "hsa-mir-136" "hsa-mir-154" "hsa-mir-206"
## [29] "hsa-mir-2114" "hsa-mir-216b" "hsa-mir-217" "hsa-mir-218-1"
## [33] "hsa-mir-218-2" "hsa-mir-299" "hsa-mir-31" "hsa-mir-323"
## [37] "hsa-mir-323b" "hsa-mir-326" "hsa-mir-329-1" "hsa-mir-329-2"
## [41] "hsa-mir-346" "hsa-mir-34b" "hsa-mir-3614" "hsa-mir-3652"
## [45] "hsa-mir-370" "hsa-mir-376a-2" "hsa-mir-376c" "hsa-mir-377"
## [49] "hsa-mir-380" "hsa-mir-382" "hsa-mir-3923" "hsa-mir-411"
## [53] "hsa-mir-429" "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a"
## [57] "hsa-mir-494" "hsa-mir-541" "hsa-mir-543" "hsa-mir-548j"
## [61] "hsa-mir-585" "hsa-mir-627" "hsa-mir-642a" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-663" "hsa-mir-668"
## [69] "hsa-mir-670" "hsa-mir-889" "hsa-mir-891a"f35_10 = top_x_percent(fabia_35, perct = 10)## [1] "bicluster21"
## [1] "G6PD.RPPA" "RBM15.RPPA" "PTEN.RPPA" "FASN.RPPA"
## [5] "VHL.RPPA" "TFRC.RPPA" "AKT1S1.R2Gn" "IGFBP2.R2Gn"
## [9] "FN1.R2Gn" "CDH2.R2Gn" "GATA3.R2Gn" "RPS6.R2Gn"
## [13] "PXN.R2Gn" "SYP.R2Gn" "hsa-mir-1185-1" "hsa-mir-1193"
## [17] "hsa-mir-124-1" "hsa-mir-124-3" "hsa-mir-1258" "hsa-mir-135b"
## [21] "hsa-mir-153-1" "hsa-mir-153-2" "hsa-mir-26a-1" "hsa-mir-3166"
## [25] "hsa-mir-3191" "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-329-2"
## [29] "hsa-mir-3682" "hsa-mir-3690" "hsa-mir-376a-2" "hsa-mir-383"
## [33] "hsa-mir-3909" "hsa-mir-3923" "hsa-mir-3926-2" "hsa-mir-3934"
## [37] "hsa-mir-412" "hsa-mir-432" "hsa-mir-433" "hsa-mir-466"
## [41] "hsa-mir-493" "hsa-mir-499" "hsa-mir-506" "hsa-mir-507"
## [45] "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3"
## [49] "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"
## [53] "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [57] "hsa-mir-514b" "hsa-mir-516a-1" "hsa-mir-544" "hsa-mir-548s"
## [61] "hsa-mir-548v" "hsa-mir-550a-2" "hsa-mir-552" "hsa-mir-580"
## [65] "hsa-mir-581" "hsa-mir-585" "hsa-mir-592" "hsa-mir-605"
## [69] "hsa-mir-639" "hsa-mir-767" "hsa-mir-770"
## [1] "bicluster19"
## [1] "ASNS.RPPA" "INPP4B.RPPA" "MYH11.RPPA" "ERBB3.R2Gn"
## [5] "FN1.R2Gn" "CTNNB1.R2Gn" "TGM2.R2Gn" "hsa-mir-1185-1"
## [9] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-1269" "hsa-mir-127"
## [13] "hsa-mir-134" "hsa-mir-136" "hsa-mir-146a" "hsa-mir-154"
## [17] "hsa-mir-205" "hsa-mir-206" "hsa-mir-299" "hsa-mir-323"
## [21] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-369"
## [25] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"
## [29] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379" "hsa-mir-380"
## [33] "hsa-mir-381" "hsa-mir-382" "hsa-mir-3926-1" "hsa-mir-3926-2"
## [37] "hsa-mir-409" "hsa-mir-410" "hsa-mir-411" "hsa-mir-431"
## [41] "hsa-mir-432" "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a"
## [45] "hsa-mir-487b" "hsa-mir-494" "hsa-mir-496" "hsa-mir-516a-1"
## [49] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [53] "hsa-mir-518c" "hsa-mir-518f" "hsa-mir-519a-1" "hsa-mir-519a-2"
## [57] "hsa-mir-520a" "hsa-mir-525" "hsa-mir-526b" "hsa-mir-539"
## [61] "hsa-mir-541" "hsa-mir-543" "hsa-mir-577" "hsa-mir-654"
## [65] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster16"
## [1] "GATA3.RPPA" "PDCD4.RPPA" "PREX1.RPPA" "ERBB3.R2Gn"
## [5] "IGFBP2.R2Gn" "PRKCA.R2Gn" "PRDX1.R2Gn" "HSPA1A.R2Gn"
## [9] "ERRFI1.R2Gn" "RBM3.R2Gn" "RPTOR.R2Gn" "hsa-mir-105-2"
## [13] "hsa-mir-1185-1" "hsa-mir-1193" "hsa-mir-1197" "hsa-mir-1224"
## [17] "hsa-mir-1228" "hsa-mir-1245" "hsa-mir-1248" "hsa-mir-1270-1"
## [21] "hsa-mir-129-2" "hsa-mir-1291" "hsa-mir-135a-1" "hsa-mir-184"
## [25] "hsa-mir-199a-1" "hsa-mir-199a-2" "hsa-mir-200b" "hsa-mir-214"
## [29] "hsa-mir-3170" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [33] "hsa-mir-329-2" "hsa-mir-335" "hsa-mir-3678" "hsa-mir-376a-1"
## [37] "hsa-mir-380" "hsa-mir-3909" "hsa-mir-3922" "hsa-mir-410"
## [41] "hsa-mir-412" "hsa-mir-431" "hsa-mir-432" "hsa-mir-433"
## [45] "hsa-mir-455" "hsa-mir-466" "hsa-mir-487b" "hsa-mir-488"
## [49] "hsa-mir-493" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [53] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [57] "hsa-mir-513a-2" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [61] "hsa-mir-541" "hsa-mir-550a-2" "hsa-mir-585" "hsa-mir-639"
## [65] "hsa-mir-656" "hsa-mir-668" "hsa-mir-766" "hsa-mir-873"
## [69] "hsa-mir-876" "hsa-mir-937" "hsa-mir-95"
## [1] "bicluster24"
## [1] "G6PD.RPPA" "RBM15.RPPA" "FASN.RPPA" "TSC1.RPPA"
## [5] "TTF1.RPPA" "CDK1.RPPA" "VHL.RPPA" "PRDX1.RPPA"
## [9] "XBP1.RPPA" "GAPDH.RPPA" "MSH6.RPPA" "TFRC.RPPA"
## [13] "PREX1.RPPA" "G6PD.R2Gn" "FASN.R2Gn" "EEF2.R2Gn"
## [17] "CTNNB1.R2Gn" "PRKCA.R2Gn" "TGM2.R2Gn" "CTNNA1.R2Gn"
## [21] "PIK3R1.R2Gn" "PXN.R2Gn" "PREX1.R2Gn" "SQSTM1.R2Gn"
## [25] "hsa-mir-1197" "hsa-mir-1258" "hsa-mir-127" "hsa-mir-134"
## [29] "hsa-mir-136" "hsa-mir-137" "hsa-mir-146a" "hsa-mir-200a"
## [33] "hsa-mir-26a-1" "hsa-mir-3170" "hsa-mir-329-2" "hsa-mir-3607"
## [37] "hsa-mir-3687" "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-2"
## [41] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-381"
## [45] "hsa-mir-3909" "hsa-mir-3934" "hsa-mir-3940" "hsa-mir-466"
## [49] "hsa-mir-487a" "hsa-mir-489" "hsa-mir-506" "hsa-mir-507"
## [53] "hsa-mir-508" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [57] "hsa-mir-513b" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [61] "hsa-mir-548q" "hsa-mir-548v" "hsa-mir-551b" "hsa-mir-552"
## [65] "hsa-mir-605" "hsa-mir-607" "hsa-mir-653" "hsa-mir-656"
## [69] "hsa-mir-665" "hsa-mir-873" "hsa-mir-876"
## [1] "bicluster9"
## [1] "G6PD.RPPA" "GATA3.RPPA" "FASN.RPPA" "INPP4B.RPPA"
## [5] "TTF1.RPPA" "VHL.RPPA" "PRDX1.RPPA" "MYH11.RPPA"
## [9] "G6PD.R2Gn" "FN1.R2Gn" "CTNNB1.R2Gn" "TGM2.R2Gn"
## [13] "HSPA1A.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [17] "hsa-mir-1197" "hsa-mir-1228" "hsa-mir-1247" "hsa-mir-1269"
## [21] "hsa-mir-127" "hsa-mir-134" "hsa-mir-136" "hsa-mir-154"
## [25] "hsa-mir-218-1" "hsa-mir-299" "hsa-mir-301b" "hsa-mir-320c-2"
## [29] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [33] "hsa-mir-337" "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1"
## [37] "hsa-mir-376a-2" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [41] "hsa-mir-381" "hsa-mir-382" "hsa-mir-409" "hsa-mir-410"
## [45] "hsa-mir-411" "hsa-mir-431" "hsa-mir-432" "hsa-mir-433"
## [49] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-489" "hsa-mir-494"
## [53] "hsa-mir-496" "hsa-mir-499" "hsa-mir-516a-1" "hsa-mir-516b-1"
## [57] "hsa-mir-517a" "hsa-mir-520a" "hsa-mir-525" "hsa-mir-543"
## [61] "hsa-mir-577" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [65] "hsa-mir-665" "hsa-mir-668" "hsa-mir-7-2" "hsa-mir-758"
## [69] "hsa-mir-770" "hsa-mir-876" "hsa-mir-889"
## [1] "bicluster2"
## [1] "GATA3.RPPA" "FASN.RPPA" "INPP4B.RPPA" "TTF1.RPPA"
## [5] "MSH6.RPPA" "MYH11.RPPA" "TFRC.RPPA" "FASN.R2Gn"
## [9] "CTNNA1.R2Gn" "PIK3R1.R2Gn" "BCL2L1.R2Gn" "TYMS.R2Gn"
## [13] "TFRC.R2Gn" "SQSTM1.R2Gn" "hsa-let-7f-1" "hsa-mir-1-2"
## [17] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-124-1"
## [21] "hsa-mir-124-2" "hsa-mir-124-3" "hsa-mir-1247" "hsa-mir-127"
## [25] "hsa-mir-134" "hsa-mir-154" "hsa-mir-299" "hsa-mir-301b"
## [29] "hsa-mir-3193" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [33] "hsa-mir-329-2" "hsa-mir-3687" "hsa-mir-369" "hsa-mir-370"
## [37] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c"
## [41] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-382"
## [45] "hsa-mir-3912" "hsa-mir-3922" "hsa-mir-409" "hsa-mir-411"
## [49] "hsa-mir-431" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494"
## [53] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-541" "hsa-mir-543"
## [57] "hsa-mir-580" "hsa-mir-585" "hsa-mir-636" "hsa-mir-654"
## [61] "hsa-mir-655" "hsa-mir-656" "hsa-mir-668" "hsa-mir-670"
## [65] "hsa-mir-758" "hsa-mir-767" "hsa-mir-770" "hsa-mir-873"
## [69] "hsa-mir-876" "hsa-mir-889" "hsa-mir-937"
## [1] "bicluster13"
## [1] "ASNS.RPPA" "GATA3.RPPA" "FASN.RPPA" "GAPDH.RPPA"
## [5] "MSH6.RPPA" "AKT1S1.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn"
## [9] "AKT2.R2Gn" "AKT1.R2Gn" "EEF2.R2Gn" "ACVRL1.R2Gn"
## [13] "RPS6.R2Gn" "PDCD4.R2Gn" "JUN.R2Gn" "STAT3.R2Gn"
## [17] "PARK7.R2Gn" "TGM2.R2Gn" "RAB11A.R2Gn" "ACACB.R2Gn"
## [21] "COL6A1.R2Gn" "ANXA1.R2Gn" "TFRC.R2Gn" "HSPA1A.R2Gn"
## [25] "SYP.R2Gn" "hsa-mir-1193" "hsa-mir-124-2" "hsa-mir-124-3"
## [29] "hsa-mir-1258" "hsa-mir-125b-1" "hsa-mir-137" "hsa-mir-146b"
## [33] "hsa-mir-155" "hsa-mir-184" "hsa-mir-196a-2" "hsa-mir-202"
## [37] "hsa-mir-206" "hsa-mir-21" "hsa-mir-221" "hsa-mir-2355"
## [41] "hsa-mir-31" "hsa-mir-3682" "hsa-mir-376a-2" "hsa-mir-380"
## [45] "hsa-mir-3934" "hsa-mir-412" "hsa-mir-466" "hsa-mir-490"
## [49] "hsa-mir-510" "hsa-mir-511-1" "hsa-mir-513a-1" "hsa-mir-513b"
## [53] "hsa-mir-513c" "hsa-mir-516a-2" "hsa-mir-517a" "hsa-mir-518b"
## [57] "hsa-mir-518f" "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-544"
## [61] "hsa-mir-548v" "hsa-mir-552" "hsa-mir-582" "hsa-mir-592"
## [65] "hsa-mir-605" "hsa-mir-607" "hsa-mir-653" "hsa-mir-656"
## [69] "hsa-mir-708" "hsa-mir-767" "hsa-mir-891a"
## [1] "bicluster29"
## [1] "ASNS.RPPA" "PEA15.RPPA" "TFRC.RPPA" "PREX1.RPPA"
## [5] "ERBB3.R2Gn" "FN1.R2Gn" "CDH2.R2Gn" "PEA15.R2Gn"
## [9] "MAPK1.R2Gn" "ITGA2.R2Gn" "ADAR.R2Gn" "FASN.R2Gn"
## [13] "YWHAE.R2Gn" "CTNNB1.R2Gn" "PRKCA.R2Gn" "PDCD4.R2Gn"
## [17] "CCND1.R2Gn" "PIK3R2.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn"
## [21] "PREX1.R2Gn" "hsa-mir-100" "hsa-mir-10a" "hsa-mir-1185-1"
## [25] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-1248" "hsa-mir-1258"
## [29] "hsa-mir-1270-2" "hsa-mir-135a-1" "hsa-mir-139" "hsa-mir-182"
## [33] "hsa-mir-183" "hsa-mir-196b" "hsa-mir-206" "hsa-mir-3166"
## [37] "hsa-mir-3170" "hsa-mir-3199-1" "hsa-mir-323" "hsa-mir-323b"
## [41] "hsa-mir-329-1" "hsa-mir-335" "hsa-mir-338" "hsa-mir-3678"
## [45] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c"
## [49] "hsa-mir-380" "hsa-mir-409" "hsa-mir-410" "hsa-mir-411"
## [53] "hsa-mir-424" "hsa-mir-431" "hsa-mir-433" "hsa-mir-485"
## [57] "hsa-mir-487a" "hsa-mir-488" "hsa-mir-494" "hsa-mir-496"
## [61] "hsa-mir-517a" "hsa-mir-541" "hsa-mir-543" "hsa-mir-582"
## [65] "hsa-mir-654" "hsa-mir-656" "hsa-mir-668" "hsa-mir-873"
## [69] "hsa-mir-876" "hsa-mir-940" "hsa-mir-96"
## [1] "bicluster10"
## [1] "G6PD.RPPA" "ATM.RPPA" "FASN.RPPA" "TSC1.RPPA"
## [5] "PRDX1.RPPA" "GAPDH.RPPA" "MSH6.RPPA" "PDK1.RPPA"
## [9] "TFRC.RPPA" "PREX1.RPPA" "MAPK14.R2Gn" "ERBB3.R2Gn"
## [13] "IGFBP2.R2Gn" "FN1.R2Gn" "AKT2.R2Gn" "CDH2.R2Gn"
## [17] "RB1.R2Gn" "MAPK9.R2Gn" "XRCC5.R2Gn" "ADAR.R2Gn"
## [21] "FASN.R2Gn" "CTNNB1.R2Gn" "PIK3R1.R2Gn" "GAPDH.R2Gn"
## [25] "TUBA1B.R2Gn" "XIAP.R2Gn" "TFRC.R2Gn" "PARP1.R2Gn"
## [29] "hsa-mir-1224" "hsa-mir-1269" "hsa-mir-129-2" "hsa-mir-135b"
## [33] "hsa-mir-138-1" "hsa-mir-139" "hsa-mir-205" "hsa-mir-2114"
## [37] "hsa-mir-218-1" "hsa-mir-29c" "hsa-mir-320c-2" "hsa-mir-329-2"
## [41] "hsa-mir-3655" "hsa-mir-3922" "hsa-mir-3923" "hsa-mir-3926-2"
## [45] "hsa-mir-3940" "hsa-mir-466" "hsa-mir-490" "hsa-mir-493"
## [49] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [53] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [57] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [61] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-552"
## [65] "hsa-mir-585" "hsa-mir-605" "hsa-mir-664" "hsa-mir-665"
## [69] "hsa-mir-675" "hsa-mir-767" "hsa-mir-876"
## [1] "bicluster7"
## [1] "G6PD.RPPA" "GATA3.RPPA" "ATM.RPPA" "EGFR.RPPA"
## [5] "TSC1.RPPA" "GAPDH.RPPA" "MYH11.RPPA" "TFRC.RPPA"
## [9] "KDR.R2Gn" "ERBB3.R2Gn" "FN1.R2Gn" "CTNNB1.R2Gn"
## [13] "TGM2.R2Gn" "CCND1.R2Gn" "GAPDH.R2Gn" "MYH9.R2Gn"
## [17] "COL6A1.R2Gn" "SYP.R2Gn" "PARP1.R2Gn" "SNAI2.R2Gn"
## [21] "CHGA.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1226"
## [25] "hsa-mir-1269" "hsa-mir-1293" "hsa-mir-184" "hsa-mir-2114"
## [29] "hsa-mir-29c" "hsa-mir-30c-1" "hsa-mir-3130-1" "hsa-mir-3166"
## [33] "hsa-mir-3191" "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-3662"
## [37] "hsa-mir-377" "hsa-mir-3922" "hsa-mir-3923" "hsa-mir-411"
## [41] "hsa-mir-429" "hsa-mir-452" "hsa-mir-485" "hsa-mir-487a"
## [45] "hsa-mir-494" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [49] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [53] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [57] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [61] "hsa-mir-518b" "hsa-mir-543" "hsa-mir-548j" "hsa-mir-548v"
## [65] "hsa-mir-551b" "hsa-mir-577" "hsa-mir-582" "hsa-mir-655"
## [69] "hsa-mir-656" "hsa-mir-937" "hsa-mir-939"
## [1] "bicluster34"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "FASN.RPPA" "PDCD4.RPPA"
## [5] "MSH6.RPPA" "MSH2.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [9] "RPS6KA1.R2Gn" "ADAR.R2Gn" "EEF2.R2Gn" "CTNNB1.R2Gn"
## [13] "SHC1.R2Gn" "CCND1.R2Gn" "GAPDH.R2Gn" "CASP9.R2Gn"
## [17] "RPTOR.R2Gn" "CHGA.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1"
## [21] "hsa-mir-1229" "hsa-mir-124-1" "hsa-mir-124-3" "hsa-mir-1248"
## [25] "hsa-mir-1251" "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-1270-2"
## [29] "hsa-mir-1274b" "hsa-mir-1301" "hsa-mir-135b" "hsa-mir-183"
## [33] "hsa-mir-187" "hsa-mir-200b" "hsa-mir-218-1" "hsa-mir-218-2"
## [37] "hsa-mir-219-1" "hsa-mir-2277" "hsa-mir-296" "hsa-mir-3065"
## [41] "hsa-mir-3130-1" "hsa-mir-3144" "hsa-mir-3166" "hsa-mir-320c-2"
## [45] "hsa-mir-34b" "hsa-mir-3648" "hsa-mir-3676" "hsa-mir-3682"
## [49] "hsa-mir-3687" "hsa-mir-3690" "hsa-mir-411" "hsa-mir-433"
## [53] "hsa-mir-485" "hsa-mir-488" "hsa-mir-510" "hsa-mir-511-2"
## [57] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-514-1" "hsa-mir-514-2"
## [61] "hsa-mir-514-3" "hsa-mir-516b-1" "hsa-mir-518b" "hsa-mir-548q"
## [65] "hsa-mir-552" "hsa-mir-605" "hsa-mir-607" "hsa-mir-636"
## [69] "hsa-mir-655" "hsa-mir-887" "hsa-mir-940"
## [1] "bicluster31"
## [1] "G6PD.RPPA" "RBM15.RPPA" "ATM.RPPA" "EGFR.RPPA"
## [5] "TSC1.RPPA" "GAPDH.RPPA" "MYH11.RPPA" "TFRC.RPPA"
## [9] "ERBB3.R2Gn" "CDKN1A.R2Gn" "ITGA2.R2Gn" "YWHAE.R2Gn"
## [13] "YBX1.R2Gn" "RPS6.R2Gn" "PDCD4.R2Gn" "PIK3R1.R2Gn"
## [17] "PRDX1.R2Gn" "GAPDH.R2Gn" "HSPA1A.R2Gn" "RET.R2Gn"
## [21] "hsa-mir-105-2" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"
## [25] "hsa-mir-1197" "hsa-mir-1249" "hsa-mir-127" "hsa-mir-129-2"
## [29] "hsa-mir-1293" "hsa-mir-136" "hsa-mir-154" "hsa-mir-200a"
## [33] "hsa-mir-200b" "hsa-mir-296" "hsa-mir-299" "hsa-mir-323"
## [37] "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-33b" "hsa-mir-3682"
## [41] "hsa-mir-3687" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"
## [45] "hsa-mir-379" "hsa-mir-380" "hsa-mir-3922" "hsa-mir-410"
## [49] "hsa-mir-411" "hsa-mir-431" "hsa-mir-432" "hsa-mir-433"
## [53] "hsa-mir-487a" "hsa-mir-490" "hsa-mir-494" "hsa-mir-496"
## [57] "hsa-mir-516a-1" "hsa-mir-525" "hsa-mir-544" "hsa-mir-550a-2"
## [61] "hsa-mir-552" "hsa-mir-581" "hsa-mir-585" "hsa-mir-605"
## [65] "hsa-mir-654" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [69] "hsa-mir-767" "hsa-mir-770" "hsa-mir-891a"
## [1] "bicluster27"
## [1] "GATA3.RPPA" "INPP4B.RPPA" "ACVRL1.RPPA" "TTF1.RPPA"
## [5] "GAPDH.RPPA" "ERBB3.R2Gn" "FN1.R2Gn" "CDH2.R2Gn"
## [9] "SERPINE1.R2Gn" "CTNNB1.R2Gn" "STMN1.R2Gn" "TGM2.R2Gn"
## [13] "CCND1.R2Gn" "PRDX1.R2Gn" "MYH9.R2Gn" "PDK1.R2Gn"
## [17] "NDRG1.R2Gn" "HSPA1A.R2Gn" "SYP.R2Gn" "PARP1.R2Gn"
## [21] "CHGA.R2Gn" "IDH3A.R2Gn" "hsa-mir-1245" "hsa-mir-1255a"
## [25] "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1292" "hsa-mir-1296"
## [29] "hsa-mir-133b" "hsa-mir-135a-1" "hsa-mir-141" "hsa-mir-184"
## [33] "hsa-mir-205" "hsa-mir-296" "hsa-mir-29c" "hsa-mir-3065"
## [37] "hsa-mir-329-2" "hsa-mir-3928" "hsa-mir-3934" "hsa-mir-483"
## [41] "hsa-mir-499" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [45] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [49] "hsa-mir-511-2" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"
## [53] "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [57] "hsa-mir-514b" "hsa-mir-516a-1" "hsa-mir-516b-1" "hsa-mir-517a"
## [61] "hsa-mir-519a-2" "hsa-mir-520a" "hsa-mir-525" "hsa-mir-552"
## [65] "hsa-mir-561" "hsa-mir-570" "hsa-mir-577" "hsa-mir-580"
## [69] "hsa-mir-592" "hsa-mir-656" "hsa-mir-767"
## [1] "bicluster15"
## [1] "G6PD.RPPA" "RBM15.RPPA" "PTEN.RPPA" "ATM.RPPA"
## [5] "EGFR.RPPA" "FASN.RPPA" "INPP4B.RPPA" "PDCD4.RPPA"
## [9] "TTF1.RPPA" "CDK1.RPPA" "VHL.RPPA" "PRDX1.RPPA"
## [13] "XBP1.RPPA" "ERCC1.RPPA" "MET.R2Gn" "PRKCA.R2Gn"
## [17] "TGM2.R2Gn" "COL6A1.R2Gn" "ANXA1.R2Gn" "PXN.R2Gn"
## [21] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-122" "hsa-mir-1258"
## [25] "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-130a" "hsa-mir-137"
## [29] "hsa-mir-146a" "hsa-mir-153-1" "hsa-mir-184" "hsa-mir-196a-2"
## [33] "hsa-mir-196b" "hsa-mir-2114" "hsa-mir-218-1" "hsa-mir-3170"
## [37] "hsa-mir-3173" "hsa-mir-320c-1" "hsa-mir-320c-2" "hsa-mir-3610"
## [41] "hsa-mir-376a-2" "hsa-mir-377" "hsa-mir-3940" "hsa-mir-455"
## [45] "hsa-mir-466" "hsa-mir-483" "hsa-mir-489" "hsa-mir-496"
## [49] "hsa-mir-507" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-514-1"
## [53] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-548v" "hsa-mir-551b"
## [57] "hsa-mir-552" "hsa-mir-570" "hsa-mir-605" "hsa-mir-607"
## [61] "hsa-mir-615" "hsa-mir-653" "hsa-mir-654" "hsa-mir-656"
## [65] "hsa-mir-665" "hsa-mir-7-2" "hsa-mir-765" "hsa-mir-770"
## [69] "hsa-mir-873" "hsa-mir-876" "hsa-mir-95"
## [1] "bicluster25"
## [1] "IGFBP2.RPPA" "ATM.RPPA" "AR.RPPA" "GAPDH.RPPA"
## [5] "KDR.R2Gn" "IGFBP2.R2Gn" "YWHAZ.R2Gn" "ITGA2.R2Gn"
## [9] "CTNNB1.R2Gn" "PDCD4.R2Gn" "PRRT2.R2Gn" "PIK3R1.R2Gn"
## [13] "BCL2L1.R2Gn" "GAPDH.R2Gn" "ANXA1.R2Gn" "ERRFI1.R2Gn"
## [17] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1249" "hsa-mir-1269"
## [21] "hsa-mir-1293" "hsa-mir-135a-1" "hsa-mir-153-1" "hsa-mir-182"
## [25] "hsa-mir-183" "hsa-mir-190b" "hsa-mir-196a-2" "hsa-mir-196b"
## [29] "hsa-mir-205" "hsa-mir-22" "hsa-mir-301b" "hsa-mir-3170"
## [33] "hsa-mir-3173" "hsa-mir-3187" "hsa-mir-3193" "hsa-mir-320c-1"
## [37] "hsa-mir-329-2" "hsa-mir-3610" "hsa-mir-3620" "hsa-mir-3687"
## [41] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376c" "hsa-mir-377"
## [45] "hsa-mir-3928" "hsa-mir-3940" "hsa-mir-411" "hsa-mir-466"
## [49] "hsa-mir-483" "hsa-mir-487a" "hsa-mir-494" "hsa-mir-513a-1"
## [53] "hsa-mir-513a-2" "hsa-mir-517a" "hsa-mir-518c" "hsa-mir-548q"
## [57] "hsa-mir-551b" "hsa-mir-580" "hsa-mir-585" "hsa-mir-615"
## [61] "hsa-mir-642a" "hsa-mir-655" "hsa-mir-656" "hsa-mir-663"
## [65] "hsa-mir-665" "hsa-mir-668" "hsa-mir-770" "hsa-mir-873"
## [69] "hsa-mir-876" "hsa-mir-891a" "hsa-mir-96"
## [1] "bicluster22"
## [1] "GATA3.RPPA" "PEA15.RPPA" "ATM.RPPA" "FASN.RPPA"
## [5] "AR.RPPA" "ERBB3.R2Gn" "CDH2.R2Gn" "PEA15.R2Gn"
## [9] "XRCC5.R2Gn" "ADAR.R2Gn" "EEF2.R2Gn" "CTNNB1.R2Gn"
## [13] "SHC1.R2Gn" "TGM2.R2Gn" "GAPDH.R2Gn" "PARP1.R2Gn"
## [17] "RPTOR.R2Gn" "hsa-mir-105-1" "hsa-mir-1249" "hsa-mir-133b"
## [21] "hsa-mir-135b" "hsa-mir-139" "hsa-mir-199a-2" "hsa-mir-199b"
## [25] "hsa-mir-200a" "hsa-mir-206" "hsa-mir-3166" "hsa-mir-3191"
## [29] "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-3655" "hsa-mir-3678"
## [33] "hsa-mir-3922" "hsa-mir-3926-2" "hsa-mir-3934" "hsa-mir-429"
## [37] "hsa-mir-506" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [41] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [45] "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [49] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"
## [53] "hsa-mir-518b" "hsa-mir-518c" "hsa-mir-518f" "hsa-mir-519a-1"
## [57] "hsa-mir-519a-2" "hsa-mir-520a" "hsa-mir-525" "hsa-mir-526b"
## [61] "hsa-mir-548s" "hsa-mir-579" "hsa-mir-592" "hsa-mir-605"
## [65] "hsa-mir-618" "hsa-mir-656" "hsa-mir-7-2" "hsa-mir-7-3"
## [69] "hsa-mir-708" "hsa-mir-767" "hsa-mir-935"
## [1] "bicluster1"
## [1] "BRCA2.RPPA" "FASN.RPPA" "ACVRL1.RPPA" "TTF1.RPPA"
## [5] "IRS1.RPPA" "GAPDH.RPPA" "TFRC.RPPA" "ERBB3.R2Gn"
## [9] "FN1.R2Gn" "AKT3.R2Gn" "ADAR.R2Gn" "FASN.R2Gn"
## [13] "FOXO3.R2Gn" "GAPDH.R2Gn" "SQSTM1.R2Gn" "hsa-mir-105-1"
## [17] "hsa-mir-106a" "hsa-mir-1185-2" "hsa-mir-124-3" "hsa-mir-127"
## [21] "hsa-mir-134" "hsa-mir-135a-1" "hsa-mir-135a-2" "hsa-mir-136"
## [25] "hsa-mir-137" "hsa-mir-144" "hsa-mir-154" "hsa-mir-190"
## [29] "hsa-mir-194-1" "hsa-mir-202" "hsa-mir-2114" "hsa-mir-223"
## [33] "hsa-mir-26a-1" "hsa-mir-29a" "hsa-mir-320c-1" "hsa-mir-323"
## [37] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-34b"
## [41] "hsa-mir-363" "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-2"
## [45] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-379" "hsa-mir-380"
## [49] "hsa-mir-381" "hsa-mir-3912" "hsa-mir-409" "hsa-mir-411"
## [53] "hsa-mir-433" "hsa-mir-451" "hsa-mir-485" "hsa-mir-486"
## [57] "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-494" "hsa-mir-495"
## [61] "hsa-mir-511-1" "hsa-mir-517a" "hsa-mir-525" "hsa-mir-541"
## [65] "hsa-mir-543" "hsa-mir-580" "hsa-mir-654" "hsa-mir-655"
## [69] "hsa-mir-656" "hsa-mir-665" "hsa-mir-770"
## [1] "bicluster28"
## [1] "TFRC.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn"
## [5] "GATA3.R2Gn" "CCND1.R2Gn" "XBP1.R2Gn" "GAPDH.R2Gn"
## [9] "MYH9.R2Gn" "TFRC.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn"
## [13] "PARP1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1193" "hsa-mir-1197"
## [17] "hsa-mir-1249" "hsa-mir-1258" "hsa-mir-1269" "hsa-mir-1270-1"
## [21] "hsa-mir-135a-1" "hsa-mir-138-1" "hsa-mir-138-2" "hsa-mir-139"
## [25] "hsa-mir-154" "hsa-mir-187" "hsa-mir-196a-2" "hsa-mir-205"
## [29] "hsa-mir-216b" "hsa-mir-3130-1" "hsa-mir-3173" "hsa-mir-323"
## [33] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-346" "hsa-mir-34b"
## [37] "hsa-mir-3619" "hsa-mir-3687" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [41] "hsa-mir-380" "hsa-mir-3926-1" "hsa-mir-410" "hsa-mir-411"
## [45] "hsa-mir-432" "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a"
## [49] "hsa-mir-488" "hsa-mir-489" "hsa-mir-490" "hsa-mir-493"
## [53] "hsa-mir-494" "hsa-mir-495" "hsa-mir-496" "hsa-mir-510"
## [57] "hsa-mir-517a" "hsa-mir-541" "hsa-mir-543" "hsa-mir-548q"
## [61] "hsa-mir-585" "hsa-mir-615" "hsa-mir-636" "hsa-mir-655"
## [65] "hsa-mir-656" "hsa-mir-668" "hsa-mir-760" "hsa-mir-885"
## [69] "hsa-mir-887" "hsa-mir-9-3" "hsa-mir-935"
## [1] "bicluster12"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "TTF1.RPPA" "GAPDH.RPPA"
## [5] "MSH6.RPPA" "TFRC.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [9] "FN1.R2Gn" "CDKN1A.R2Gn" "GATA3.R2Gn" "CCNE1.R2Gn"
## [13] "STMN1.R2Gn" "CDK1.R2Gn" "PRDX1.R2Gn" "GAPDH.R2Gn"
## [17] "TUBA1B.R2Gn" "FOXM1.R2Gn" "HSPA1A.R2Gn" "SNAI2.R2Gn"
## [21] "RET.R2Gn" "SQSTM1.R2Gn" "hsa-mir-105-2" "hsa-mir-1185-1"
## [25] "hsa-mir-1185-2" "hsa-mir-1262" "hsa-mir-1269" "hsa-mir-129-2"
## [29] "hsa-mir-1293" "hsa-mir-200a" "hsa-mir-2114" "hsa-mir-29b-1"
## [33] "hsa-mir-29b-2" "hsa-mir-29c" "hsa-mir-31" "hsa-mir-3144"
## [37] "hsa-mir-320c-2" "hsa-mir-34b" "hsa-mir-3655" "hsa-mir-3662"
## [41] "hsa-mir-3677" "hsa-mir-377" "hsa-mir-3923" "hsa-mir-3934"
## [45] "hsa-mir-411" "hsa-mir-429" "hsa-mir-4326" "hsa-mir-485"
## [49] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-506" "hsa-mir-507"
## [53] "hsa-mir-510" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-514-1"
## [57] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-548q"
## [61] "hsa-mir-627" "hsa-mir-655" "hsa-mir-656" "hsa-mir-675"
## [65] "hsa-mir-767" "hsa-mir-891a" "hsa-mir-9-1" "hsa-mir-9-2"
## [69] "hsa-mir-9-3" "hsa-mir-935" "hsa-mir-937"
## [1] "bicluster20"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "AR.RPPA" "ERBB3.R2Gn"
## [5] "IGFBP2.R2Gn" "FN1.R2Gn" "AKT3.R2Gn" "RAD51.R2Gn"
## [9] "BECN1.R2Gn" "EIF4G1.R2Gn" "AXL.R2Gn" "BIRC2.R2Gn"
## [13] "ADAR.R2Gn" "ACVRL1.R2Gn" "CTNNB1.R2Gn" "RPS6.R2Gn"
## [17] "ANLN.R2Gn" "STMN1.R2Gn" "CDK1.R2Gn" "E2F1.R2Gn"
## [21] "CTNNA1.R2Gn" "MYC.R2Gn" "CAV1.R2Gn" "TYMS.R2Gn"
## [25] "CCNB1.R2Gn" "TUBA1B.R2Gn" "FOXM1.R2Gn" "COL6A1.R2Gn"
## [29] "YWHAB.R2Gn" "EZH2.R2Gn" "BID.R2Gn" "CCNE2.R2Gn"
## [33] "CDKN2A.R2Gn" "hsa-mir-1185-1" "hsa-mir-1245" "hsa-mir-1247"
## [37] "hsa-mir-1262" "hsa-mir-1296" "hsa-mir-135a-1" "hsa-mir-135a-2"
## [41] "hsa-mir-135b" "hsa-mir-138-1" "hsa-mir-138-2" "hsa-mir-187"
## [45] "hsa-mir-202" "hsa-mir-216a" "hsa-mir-29c" "hsa-mir-3130-1"
## [49] "hsa-mir-3144" "hsa-mir-3191" "hsa-mir-3676" "hsa-mir-372"
## [53] "hsa-mir-3923" "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-499"
## [57] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [61] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-514-1" "hsa-mir-514-2"
## [65] "hsa-mir-514-3" "hsa-mir-516b-1" "hsa-mir-548v" "hsa-mir-765"
## [69] "hsa-mir-876" "hsa-mir-887" "hsa-mir-940"
## [1] "bicluster11"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "EGFR.RPPA" "AR.RPPA"
## [5] "MSH6.RPPA" "G6PD.R2Gn" "ERBB3.R2Gn" "FN1.R2Gn"
## [9] "EEF2.R2Gn" "TGM2.R2Gn" "CCND1.R2Gn" "COL6A1.R2Gn"
## [13] "HSPA1A.R2Gn" "SYP.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [17] "hsa-mir-1197" "hsa-mir-1269" "hsa-mir-127" "hsa-mir-1270-1"
## [21] "hsa-mir-1270-2" "hsa-mir-136" "hsa-mir-154" "hsa-mir-200a"
## [25] "hsa-mir-205" "hsa-mir-206" "hsa-mir-216b" "hsa-mir-323"
## [29] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-3655"
## [33] "hsa-mir-370" "hsa-mir-376a-2" "hsa-mir-376c" "hsa-mir-377"
## [37] "hsa-mir-379" "hsa-mir-380" "hsa-mir-381" "hsa-mir-382"
## [41] "hsa-mir-409" "hsa-mir-410" "hsa-mir-411" "hsa-mir-466"
## [45] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-494"
## [49] "hsa-mir-495" "hsa-mir-496" "hsa-mir-516a-1" "hsa-mir-516a-2"
## [53] "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-518c" "hsa-mir-520a"
## [57] "hsa-mir-525" "hsa-mir-539" "hsa-mir-541" "hsa-mir-543"
## [61] "hsa-mir-551b" "hsa-mir-580" "hsa-mir-592" "hsa-mir-639"
## [65] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [69] "hsa-mir-873" "hsa-mir-876" "hsa-mir-889"
## [1] "bicluster14"
## [1] "G6PD.RPPA" "FASN.RPPA" "PDCD4.RPPA" "IRS1.RPPA"
## [5] "GAPDH.RPPA" "MSH6.RPPA" "NF2.RPPA" "ERBB2.R2Gn"
## [9] "G6PD.R2Gn" "ERBB3.R2Gn" "FN1.R2Gn" "SMAD3.R2Gn"
## [13] "FASN.R2Gn" "ACVRL1.R2Gn" "CTNNB1.R2Gn" "ANLN.R2Gn"
## [17] "STMN1.R2Gn" "FOXO3.R2Gn" "BCL2.R2Gn" "CCND1.R2Gn"
## [21] "XBP1.R2Gn" "GAPDH.R2Gn" "COL6A1.R2Gn" "TFRC.R2Gn"
## [25] "HSPA1A.R2Gn" "SYP.R2Gn" "SNAI2.R2Gn" "hsa-mir-105-1"
## [29] "hsa-mir-105-2" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1269"
## [33] "hsa-mir-1293" "hsa-mir-153-1" "hsa-mir-199a-1" "hsa-mir-199a-2"
## [37] "hsa-mir-200a" "hsa-mir-200b" "hsa-mir-202" "hsa-mir-214"
## [41] "hsa-mir-26a-1" "hsa-mir-301b" "hsa-mir-3130-1" "hsa-mir-3199-1"
## [45] "hsa-mir-3200" "hsa-mir-320c-2" "hsa-mir-329-1" "hsa-mir-3655"
## [49] "hsa-mir-3690" "hsa-mir-3926-1" "hsa-mir-429" "hsa-mir-433"
## [53] "hsa-mir-488" "hsa-mir-511-1" "hsa-mir-511-2" "hsa-mir-516a-1"
## [57] "hsa-mir-517a" "hsa-mir-520a" "hsa-mir-525" "hsa-mir-526b"
## [61] "hsa-mir-548j" "hsa-mir-548q" "hsa-mir-577" "hsa-mir-585"
## [65] "hsa-mir-598" "hsa-mir-668" "hsa-mir-767" "hsa-mir-885"
## [69] "hsa-mir-887" "hsa-mir-9-3" "hsa-mir-940"
## [1] "bicluster17"
## [1] "PTEN.RPPA" "PEA15.RPPA" "EGFR.RPPA" "TSC1.RPPA"
## [5] "TTF1.RPPA" "VHL.RPPA" "GAPDH.RPPA" "MSH2.RPPA"
## [9] "DIRAS3.R2Gn" "ERBB3.R2Gn" "CDH2.R2Gn" "PEA15.R2Gn"
## [13] "ITGA2.R2Gn" "ADAR.R2Gn" "SERPINE1.R2Gn" "CTNNB1.R2Gn"
## [17] "SHC1.R2Gn" "RAB11A.R2Gn" "CCND1.R2Gn" "PIK3R1.R2Gn"
## [21] "GAPDH.R2Gn" "PXN.R2Gn" "ANXA7.R2Gn" "CHGA.R2Gn"
## [25] "IDH3A.R2Gn" "hsa-mir-1226" "hsa-mir-1249" "hsa-mir-1255a"
## [29] "hsa-mir-1258" "hsa-mir-1292" "hsa-mir-138-1" "hsa-mir-138-2"
## [33] "hsa-mir-144" "hsa-mir-182" "hsa-mir-184" "hsa-mir-216a"
## [37] "hsa-mir-218-1" "hsa-mir-218-2" "hsa-mir-219-1" "hsa-mir-30c-1"
## [41] "hsa-mir-3170" "hsa-mir-3190" "hsa-mir-3191" "hsa-mir-3199-2"
## [45] "hsa-mir-3647" "hsa-mir-3651" "hsa-mir-3652" "hsa-mir-383"
## [49] "hsa-mir-4326" "hsa-mir-451" "hsa-mir-506" "hsa-mir-507"
## [53] "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3"
## [57] "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"
## [61] "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [65] "hsa-mir-514b" "hsa-mir-520a" "hsa-mir-659" "hsa-mir-760"
## [69] "hsa-mir-876" "hsa-mir-940" "hsa-mir-96"
## [1] "bicluster33"
## [1] "IGFBP2.RPPA" "AR.RPPA" "TFRC.RPPA" "IGFBP2.R2Gn"
## [5] "FN1.R2Gn" "FASN.R2Gn" "EEF2.R2Gn" "JUN.R2Gn"
## [9] "FOXO3.R2Gn" "TGM2.R2Gn" "PIK3R1.R2Gn" "NDRG1.R2Gn"
## [13] "HSPA1A.R2Gn" "ERRFI1.R2Gn" "hsa-mir-1185-2" "hsa-mir-122"
## [17] "hsa-mir-1247" "hsa-mir-1249" "hsa-mir-1269" "hsa-mir-129-1"
## [21] "hsa-mir-129-2" "hsa-mir-1292" "hsa-mir-138-1" "hsa-mir-138-2"
## [25] "hsa-mir-154" "hsa-mir-1909" "hsa-mir-196a-2" "hsa-mir-216b"
## [29] "hsa-mir-3144" "hsa-mir-3170" "hsa-mir-3173" "hsa-mir-3191"
## [33] "hsa-mir-3193" "hsa-mir-320c-1" "hsa-mir-323b" "hsa-mir-329-1"
## [37] "hsa-mir-329-2" "hsa-mir-346" "hsa-mir-3662" "hsa-mir-3678"
## [41] "hsa-mir-370" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-383"
## [45] "hsa-mir-411" "hsa-mir-487a" "hsa-mir-490" "hsa-mir-494"
## [49] "hsa-mir-504" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-516a-1"
## [53] "hsa-mir-516a-2" "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-519a-1"
## [57] "hsa-mir-519a-2" "hsa-mir-520a" "hsa-mir-526b" "hsa-mir-541"
## [61] "hsa-mir-615" "hsa-mir-642a" "hsa-mir-654" "hsa-mir-655"
## [65] "hsa-mir-656" "hsa-mir-665" "hsa-mir-760" "hsa-mir-770"
## [69] "hsa-mir-873" "hsa-mir-876" "hsa-mir-885"
## [1] "bicluster5"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "ASNS.RPPA" "RBM15.RPPA"
## [5] "PEA15.RPPA" "ATM.RPPA" "EGFR.RPPA" "PCNA.RPPA"
## [9] "TSC1.RPPA" "VHL.RPPA" "GAPDH.RPPA" "NF2.RPPA"
## [13] "TFRC.RPPA" "IGFBP2.R2Gn" "AKT1.R2Gn" "CDH2.R2Gn"
## [17] "CDKN1A.R2Gn" "PEA15.R2Gn" "SMAD3.R2Gn" "ADAR.R2Gn"
## [21] "SERPINE1.R2Gn" "YWHAE.R2Gn" "SMAD4.R2Gn" "CTNNB1.R2Gn"
## [25] "SHC1.R2Gn" "FOXO3.R2Gn" "GAPDH.R2Gn" "COL6A1.R2Gn"
## [29] "TFRC.R2Gn" "ERRFI1.R2Gn" "SYP.R2Gn" "RBM3.R2Gn"
## [33] "SNAI2.R2Gn" "hsa-mir-1179" "hsa-mir-1228" "hsa-mir-1249"
## [37] "hsa-mir-1255a" "hsa-mir-1262" "hsa-mir-1305" "hsa-mir-184"
## [41] "hsa-mir-200a" "hsa-mir-200b" "hsa-mir-206" "hsa-mir-217"
## [45] "hsa-mir-218-1" "hsa-mir-218-2" "hsa-mir-219-1" "hsa-mir-296"
## [49] "hsa-mir-301b" "hsa-mir-3173" "hsa-mir-320b-2" "hsa-mir-3610"
## [53] "hsa-mir-3648" "hsa-mir-3653" "hsa-mir-3676" "hsa-mir-3687"
## [57] "hsa-mir-3909" "hsa-mir-3917" "hsa-mir-3926-1" "hsa-mir-3940"
## [61] "hsa-mir-411" "hsa-mir-429" "hsa-mir-4326" "hsa-mir-454"
## [65] "hsa-mir-490" "hsa-mir-548q" "hsa-mir-552" "hsa-mir-580"
## [69] "hsa-mir-615" "hsa-mir-675" "hsa-mir-885"
## [1] "bicluster18"
## [1] "GATA3.RPPA" "PEA15.RPPA" "GAPDH.RPPA" "TFRC.RPPA"
## [5] "MAPK14.R2Gn" "ERBB3.R2Gn" "AKT1S1.R2Gn" "CDH2.R2Gn"
## [9] "BECN1.R2Gn" "GATA3.R2Gn" "EIF4G1.R2Gn" "MAPK1.R2Gn"
## [13] "BIRC2.R2Gn" "VASP.R2Gn" "XRCC5.R2Gn" "ITGA2.R2Gn"
## [17] "ADAR.R2Gn" "EEF2.R2Gn" "CTNNB1.R2Gn" "RPS6.R2Gn"
## [21] "CDH3.R2Gn" "TGM2.R2Gn" "MS4A1.R2Gn" "LCK.R2Gn"
## [25] "XRCC1.R2Gn" "TP63.R2Gn" "GAPDH.R2Gn" "MYH9.R2Gn"
## [29] "NDRG1.R2Gn" "ERCC1.R2Gn" "BID.R2Gn" "TFRC.R2Gn"
## [33] "PXN.R2Gn" "ERRFI1.R2Gn" "PARP1.R2Gn" "TFF1.R2Gn"
## [37] "KCNJ13.R2Gn" "hsa-mir-124-3" "hsa-mir-1254" "hsa-mir-1269"
## [41] "hsa-mir-1304" "hsa-mir-153-2" "hsa-mir-196b" "hsa-mir-203"
## [45] "hsa-mir-216b" "hsa-mir-224" "hsa-mir-3130-1" "hsa-mir-3170"
## [49] "hsa-mir-320c-2" "hsa-mir-3678" "hsa-mir-383" "hsa-mir-3922"
## [53] "hsa-mir-452" "hsa-mir-490" "hsa-mir-499" "hsa-mir-506"
## [57] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [61] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [65] "hsa-mir-513b" "hsa-mir-514b" "hsa-mir-516a-1" "hsa-mir-516b-1"
## [69] "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-643"
## [1] "bicluster26"
## [1] "G6PD.RPPA" "PTEN.RPPA" "EGFR.RPPA" "PDCD4.RPPA"
## [5] "AR.RPPA" "TFRC.RPPA" "KDR.R2Gn" "ERBB3.R2Gn"
## [9] "FN1.R2Gn" "CDH2.R2Gn" "ITGA2.R2Gn" "ADAR.R2Gn"
## [13] "SERPINE1.R2Gn" "PRKCA.R2Gn" "JUN.R2Gn" "PIK3R1.R2Gn"
## [17] "TFRC.R2Gn" "ERRFI1.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1"
## [21] "hsa-mir-1185-2" "hsa-mir-124-1" "hsa-mir-1249" "hsa-mir-1305"
## [25] "hsa-mir-134" "hsa-mir-190b" "hsa-mir-2114" "hsa-mir-216b"
## [29] "hsa-mir-217" "hsa-mir-224" "hsa-mir-296" "hsa-mir-3130-1"
## [33] "hsa-mir-3144" "hsa-mir-3170" "hsa-mir-3173" "hsa-mir-3193"
## [37] "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-329-1" "hsa-mir-346"
## [41] "hsa-mir-3652" "hsa-mir-3662" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [45] "hsa-mir-377" "hsa-mir-3923" "hsa-mir-429" "hsa-mir-433"
## [49] "hsa-mir-452" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-488"
## [53] "hsa-mir-494" "hsa-mir-499" "hsa-mir-516a-1" "hsa-mir-525"
## [57] "hsa-mir-548q" "hsa-mir-548s" "hsa-mir-577" "hsa-mir-579"
## [61] "hsa-mir-580" "hsa-mir-627" "hsa-mir-654" "hsa-mir-655"
## [65] "hsa-mir-656" "hsa-mir-665" "hsa-mir-675" "hsa-mir-760"
## [69] "hsa-mir-770" "hsa-mir-873" "hsa-mir-876"
## [1] "bicluster3"
## [1] "IGFBP2.RPPA" "PTEN.RPPA" "ACVRL1.RPPA" "PDCD4.RPPA"
## [5] "ERCC1.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn"
## [9] "CDH2.R2Gn" "BECN1.R2Gn" "GATA3.R2Gn" "PEA15.R2Gn"
## [13] "XRCC5.R2Gn" "ADAR.R2Gn" "SERPINE1.R2Gn" "JUN.R2Gn"
## [17] "PIK3R1.R2Gn" "GAPDH.R2Gn" "NRG1.R2Gn" "MYH9.R2Gn"
## [21] "TFRC.R2Gn" "ERRFI1.R2Gn" "SYP.R2Gn" "PARP1.R2Gn"
## [25] "TFF1.R2Gn" "CHGA.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [29] "hsa-mir-1229" "hsa-mir-124-3" "hsa-mir-1248" "hsa-mir-1270-1"
## [33] "hsa-mir-129-2" "hsa-mir-1292" "hsa-mir-1304" "hsa-mir-182"
## [37] "hsa-mir-183" "hsa-mir-187" "hsa-mir-206" "hsa-mir-2114"
## [41] "hsa-mir-216b" "hsa-mir-301b" "hsa-mir-3191" "hsa-mir-329-1"
## [45] "hsa-mir-329-2" "hsa-mir-346" "hsa-mir-34b" "hsa-mir-3678"
## [49] "hsa-mir-3922" "hsa-mir-429" "hsa-mir-511-2" "hsa-mir-516a-1"
## [53] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [57] "hsa-mir-518f" "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"
## [61] "hsa-mir-525" "hsa-mir-526b" "hsa-mir-570" "hsa-mir-636"
## [65] "hsa-mir-663" "hsa-mir-7-2" "hsa-mir-760" "hsa-mir-765"
## [69] "hsa-mir-887" "hsa-mir-9-3" "hsa-mir-96"
## [1] "bicluster23"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "PTEN.RPPA" "EGFR.RPPA"
## [5] "FASN.RPPA" "TTF1.RPPA" "IRS1.RPPA" "ERCC1.RPPA"
## [9] "DIRAS3.R2Gn" "SRC.R2Gn" "AKT1.R2Gn" "PTEN.R2Gn"
## [13] "ADAR.R2Gn" "EGFR.R2Gn" "SERPINE1.R2Gn" "SHC1.R2Gn"
## [17] "TGM2.R2Gn" "IRS1.R2Gn" "PIK3R1.R2Gn" "TUBA1B.R2Gn"
## [21] "TFRC.R2Gn" "PXN.R2Gn" "ERRFI1.R2Gn" "SYP.R2Gn"
## [25] "ANXA7.R2Gn" "CHGA.R2Gn" "hsa-mir-1251" "hsa-mir-1269"
## [29] "hsa-mir-129-1" "hsa-mir-129-2" "hsa-mir-135a-1" "hsa-mir-135a-2"
## [33] "hsa-mir-138-2" "hsa-mir-184" "hsa-mir-187" "hsa-mir-196a-1"
## [37] "hsa-mir-196a-2" "hsa-mir-216b" "hsa-mir-217" "hsa-mir-2277"
## [41] "hsa-mir-26a-1" "hsa-mir-301b" "hsa-mir-30c-1" "hsa-mir-3193"
## [45] "hsa-mir-329-2" "hsa-mir-3651" "hsa-mir-3652" "hsa-mir-3678"
## [49] "hsa-mir-3687" "hsa-mir-3922" "hsa-mir-3926-1" "hsa-mir-433"
## [53] "hsa-mir-487a" "hsa-mir-516a-1" "hsa-mir-517a" "hsa-mir-541"
## [57] "hsa-mir-548s" "hsa-mir-551b" "hsa-mir-552" "hsa-mir-570"
## [61] "hsa-mir-605" "hsa-mir-636" "hsa-mir-659" "hsa-mir-663"
## [65] "hsa-mir-665" "hsa-mir-7-2" "hsa-mir-7-3" "hsa-mir-767"
## [69] "hsa-mir-9-1" "hsa-mir-9-2" "hsa-mir-9-3"
## [1] "bicluster4"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "ASNS.RPPA" "RBM15.RPPA"
## [5] "ATM.RPPA" "FASN.RPPA" "PRDX1.RPPA" "MSH6.RPPA"
## [9] "PREX1.RPPA" "G6PD.R2Gn" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [13] "FN1.R2Gn" "FASN.R2Gn" "PTK2.R2Gn" "TGM2.R2Gn"
## [17] "CCND1.R2Gn" "BCL2L1.R2Gn" "GAPDH.R2Gn" "PIK3R2.R2Gn"
## [21] "ERRFI1.R2Gn" "SYP.R2Gn" "SNAI2.R2Gn" "SQSTM1.R2Gn"
## [25] "hsa-mir-105-1" "hsa-mir-1248" "hsa-mir-1249" "hsa-mir-135b"
## [29] "hsa-mir-142" "hsa-mir-146a" "hsa-mir-200a" "hsa-mir-200b"
## [33] "hsa-mir-2114" "hsa-mir-216b" "hsa-mir-218-1" "hsa-mir-223"
## [37] "hsa-mir-29a" "hsa-mir-29b-1" "hsa-mir-29b-2" "hsa-mir-29c"
## [41] "hsa-mir-301b" "hsa-mir-31" "hsa-mir-3191" "hsa-mir-326"
## [45] "hsa-mir-34b" "hsa-mir-3610" "hsa-mir-3614" "hsa-mir-362"
## [49] "hsa-mir-3620" "hsa-mir-363" "hsa-mir-3690" "hsa-mir-3909"
## [53] "hsa-mir-3923" "hsa-mir-3926-1" "hsa-mir-429" "hsa-mir-488"
## [57] "hsa-mir-489" "hsa-mir-510" "hsa-mir-511-1" "hsa-mir-511-2"
## [61] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-548j" "hsa-mir-548q"
## [65] "hsa-mir-584" "hsa-mir-605" "hsa-mir-627" "hsa-mir-642a"
## [69] "hsa-mir-891a" "hsa-mir-9-1" "hsa-mir-9-2"
## [1] "bicluster8"
## [1] "IGFBP2.RPPA" "PTEN.RPPA" "GATA3.RPPA" "PEA15.RPPA"
## [5] "ATM.RPPA" "FASN.RPPA" "VHL.RPPA" "PRDX1.RPPA"
## [9] "MSH6.RPPA" "MYH11.RPPA" "TFRC.RPPA" "KDR.R2Gn"
## [13] "ERBB3.R2Gn" "EIF4EBP1.R2Gn" "FN1.R2Gn" "AKT2.R2Gn"
## [17] "CDH2.R2Gn" "EIF4G1.R2Gn" "EEF2.R2Gn" "SERPINE1.R2Gn"
## [21] "PDCD4.R2Gn" "GAPDH.R2Gn" "PDK1.R2Gn" "NDRG1.R2Gn"
## [25] "YWHAB.R2Gn" "ARID1A.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn"
## [29] "CHGA.R2Gn" "hsa-mir-122" "hsa-mir-1270-1" "hsa-mir-1270-2"
## [33] "hsa-mir-135b" "hsa-mir-137" "hsa-mir-138-2" "hsa-mir-141"
## [37] "hsa-mir-146b" "hsa-mir-184" "hsa-mir-188" "hsa-mir-194-1"
## [41] "hsa-mir-194-2" "hsa-mir-199a-1" "hsa-mir-199a-2" "hsa-mir-199b"
## [45] "hsa-mir-210" "hsa-mir-214" "hsa-mir-26a-1" "hsa-mir-30c-1"
## [49] "hsa-mir-3166" "hsa-mir-3170" "hsa-mir-363" "hsa-mir-3678"
## [53] "hsa-mir-3909" "hsa-mir-3926-2" "hsa-mir-3934" "hsa-mir-3940"
## [57] "hsa-mir-516a-2" "hsa-mir-519a-2" "hsa-mir-520a" "hsa-mir-526b"
## [61] "hsa-mir-548s" "hsa-mir-552" "hsa-mir-577" "hsa-mir-592"
## [65] "hsa-mir-605" "hsa-mir-627" "hsa-mir-639" "hsa-mir-675"
## [69] "hsa-mir-765" "hsa-mir-9-3" "hsa-mir-939"
## [1] "bicluster6"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "RBM15.RPPA" "GATA3.RPPA"
## [5] "ATM.RPPA" "EGFR.RPPA" "FASN.RPPA" "PRDX1.RPPA"
## [9] "XBP1.RPPA" "MSH6.RPPA" "MSH2.RPPA" "G6PD.R2Gn"
## [13] "KDR.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn" "CDH2.R2Gn"
## [17] "RB1.R2Gn" "EIF4G1.R2Gn" "SERPINE1.R2Gn" "KIT.R2Gn"
## [21] "NDRG1.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn" "SYP.R2Gn"
## [25] "RET.R2Gn" "hsa-mir-1228" "hsa-mir-1247" "hsa-mir-1248"
## [29] "hsa-mir-1249" "hsa-mir-1254" "hsa-mir-1269" "hsa-mir-135b"
## [33] "hsa-mir-137" "hsa-mir-138-1" "hsa-mir-138-2" "hsa-mir-1909"
## [37] "hsa-mir-210" "hsa-mir-216a" "hsa-mir-218-1" "hsa-mir-296"
## [41] "hsa-mir-3065" "hsa-mir-30c-1" "hsa-mir-3130-1" "hsa-mir-3144"
## [45] "hsa-mir-3199-1" "hsa-mir-328" "hsa-mir-3610" "hsa-mir-3619"
## [49] "hsa-mir-3620" "hsa-mir-372" "hsa-mir-3912" "hsa-mir-3926-1"
## [53] "hsa-mir-3926-2" "hsa-mir-3928" "hsa-mir-483" "hsa-mir-488"
## [57] "hsa-mir-504" "hsa-mir-511-2" "hsa-mir-548v" "hsa-mir-561"
## [61] "hsa-mir-579" "hsa-mir-585" "hsa-mir-592" "hsa-mir-598"
## [65] "hsa-mir-605" "hsa-mir-659" "hsa-mir-760" "hsa-mir-765"
## [69] "hsa-mir-873" "hsa-mir-876" "hsa-mir-99a"
## [1] "bicluster35"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "GATA3.RPPA" "PEA15.RPPA"
## [5] "PDCD4.RPPA" "AR.RPPA" "PRDX1.RPPA" "GAPDH.RPPA"
## [9] "IGFBP2.R2Gn" "FN1.R2Gn" "CDH2.R2Gn" "VASP.R2Gn"
## [13] "EEF2.R2Gn" "YWHAE.R2Gn" "RPS6.R2Gn" "PRKCA.R2Gn"
## [17] "PRRT2.R2Gn" "CAV1.R2Gn" "PIK3R1.R2Gn" "PRDX1.R2Gn"
## [21] "GAPDH.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn" "hsa-mir-105-1"
## [25] "hsa-mir-1224" "hsa-mir-1229" "hsa-mir-1255a" "hsa-mir-129-1"
## [29] "hsa-mir-129-2" "hsa-mir-1292" "hsa-mir-204" "hsa-mir-205"
## [33] "hsa-mir-2114" "hsa-mir-216a" "hsa-mir-3191" "hsa-mir-3200"
## [37] "hsa-mir-346" "hsa-mir-3620" "hsa-mir-3687" "hsa-mir-3926-2"
## [41] "hsa-mir-3928" "hsa-mir-450a-1" "hsa-mir-450a-2" "hsa-mir-450b"
## [45] "hsa-mir-455" "hsa-mir-483" "hsa-mir-488" "hsa-mir-507"
## [49] "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-3" "hsa-mir-510"
## [53] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513c" "hsa-mir-514b"
## [57] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518c" "hsa-mir-526b"
## [61] "hsa-mir-545" "hsa-mir-550a-2" "hsa-mir-552" "hsa-mir-585"
## [65] "hsa-mir-615" "hsa-mir-7-3" "hsa-mir-760" "hsa-mir-766"
## [69] "hsa-mir-891a" "hsa-mir-937" "hsa-mir-95"
## [1] "bicluster32"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "RBM15.RPPA" "DIRAS3.R2Gn"
## [5] "ERBB3.R2Gn" "IGFBP2.R2Gn" "CDKN1A.R2Gn" "GATA3.R2Gn"
## [9] "EEF2.R2Gn" "SERPINE1.R2Gn" "CTNNB1.R2Gn" "RPS6.R2Gn"
## [13] "CCND1.R2Gn" "PRDX1.R2Gn" "NRG1.R2Gn" "TFRC.R2Gn"
## [17] "HSPA1A.R2Gn" "RPTOR.R2Gn" "TFF1.R2Gn" "CDKN2A.R2Gn"
## [21] "IDH3A.R2Gn" "hsa-mir-105-1" "hsa-mir-105-2" "hsa-mir-122"
## [25] "hsa-mir-1226" "hsa-mir-1249" "hsa-mir-1258" "hsa-mir-1269"
## [29] "hsa-mir-1270-1" "hsa-mir-1305" "hsa-mir-133b" "hsa-mir-141"
## [33] "hsa-mir-144" "hsa-mir-182" "hsa-mir-183" "hsa-mir-191"
## [37] "hsa-mir-205" "hsa-mir-3170" "hsa-mir-3173" "hsa-mir-3199-2"
## [41] "hsa-mir-3690" "hsa-mir-3926-2" "hsa-mir-3928" "hsa-mir-451"
## [45] "hsa-mir-486" "hsa-mir-506" "hsa-mir-508" "hsa-mir-509-1"
## [49] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-2"
## [53] "hsa-mir-513b" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [57] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a" "hsa-mir-518c"
## [61] "hsa-mir-518f" "hsa-mir-525" "hsa-mir-526b" "hsa-mir-552"
## [65] "hsa-mir-561" "hsa-mir-570" "hsa-mir-580" "hsa-mir-663"
## [69] "hsa-mir-7-2" "hsa-mir-760" "hsa-mir-96"
## [1] "bicluster30"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "RBM15.RPPA" "GATA3.RPPA"
## [5] "BRCA2.RPPA" "EGFR.RPPA" "INPP4B.RPPA" "ACVRL1.RPPA"
## [9] "PDCD4.RPPA" "CDK1.RPPA" "PRDX1.RPPA" "XBP1.RPPA"
## [13] "TFRC.RPPA" "PREX1.RPPA" "G6PD.R2Gn" "IGFBP2.R2Gn"
## [17] "FN1.R2Gn" "BAP1.R2Gn" "ADAR.R2Gn" "PCNA.R2Gn"
## [21] "CTNNB1.R2Gn" "RPS6.R2Gn" "PRKCA.R2Gn" "SHC1.R2Gn"
## [25] "STMN1.R2Gn" "CDK1.R2Gn" "CCND1.R2Gn" "CCNB1.R2Gn"
## [29] "STAT5A.R2Gn" "PXN.R2Gn" "ERRFI1.R2Gn" "SYP.R2Gn"
## [33] "SQSTM1.R2Gn" "hsa-mir-105-2" "hsa-mir-124-2" "hsa-mir-1245"
## [37] "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1274b" "hsa-mir-137"
## [41] "hsa-mir-138-1" "hsa-mir-138-2" "hsa-mir-153-1" "hsa-mir-204"
## [45] "hsa-mir-206" "hsa-mir-2114" "hsa-mir-214" "hsa-mir-3187"
## [49] "hsa-mir-320c-2" "hsa-mir-3610" "hsa-mir-3614" "hsa-mir-3655"
## [53] "hsa-mir-3678" "hsa-mir-3917" "hsa-mir-455" "hsa-mir-487a"
## [57] "hsa-mir-489" "hsa-mir-499" "hsa-mir-504" "hsa-mir-519a-2"
## [61] "hsa-mir-551b" "hsa-mir-552" "hsa-mir-561" "hsa-mir-570"
## [65] "hsa-mir-577" "hsa-mir-605" "hsa-mir-607" "hsa-mir-618"
## [69] "hsa-mir-639" "hsa-mir-652" "hsa-mir-891a"f43_10 = top_x_percent(fabia_43, perct = 10)## [1] "bicluster41"
## [1] "G6PD.RPPA" "ASNS.RPPA" "RBM15.RPPA" "PTEN.RPPA"
## [5] "ATM.RPPA" "FASN.RPPA" "INPP4B.RPPA" "PDCD4.RPPA"
## [9] "CDK1.RPPA" "VHL.RPPA" "PRDX1.RPPA" "XBP1.RPPA"
## [13] "MSH6.RPPA" "AKT1.R2Gn" "ADAR.R2Gn" "EEF2.R2Gn"
## [17] "PRKCA.R2Gn" "TGM2.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1"
## [21] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-1269" "hsa-mir-134"
## [25] "hsa-mir-137" "hsa-mir-138-1" "hsa-mir-146a" "hsa-mir-153-1"
## [29] "hsa-mir-200b" "hsa-mir-217" "hsa-mir-218-1" "hsa-mir-3173"
## [33] "hsa-mir-320c-1" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [37] "hsa-mir-329-2" "hsa-mir-3614" "hsa-mir-3687" "hsa-mir-370"
## [41] "hsa-mir-376a-2" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [45] "hsa-mir-380" "hsa-mir-382" "hsa-mir-3926-1" "hsa-mir-3940"
## [49] "hsa-mir-409" "hsa-mir-433" "hsa-mir-466" "hsa-mir-487a"
## [53] "hsa-mir-489" "hsa-mir-494" "hsa-mir-496" "hsa-mir-510"
## [57] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a" "hsa-mir-541"
## [61] "hsa-mir-552" "hsa-mir-579" "hsa-mir-582" "hsa-mir-607"
## [65] "hsa-mir-653" "hsa-mir-654" "hsa-mir-656" "hsa-mir-665"
## [69] "hsa-mir-668" "hsa-mir-758" "hsa-mir-770"
## [1] "bicluster21"
## [1] "RBM15.RPPA" "PEA15.RPPA" "EGFR.RPPA" "FASN.RPPA"
## [5] "TFRC.RPPA" "CDH2.R2Gn" "PEA15.R2Gn" "ADAR.R2Gn"
## [9] "SHC1.R2Gn" "MYH9.R2Gn" "SYP.R2Gn" "hsa-mir-1193"
## [13] "hsa-mir-124-1" "hsa-mir-124-2" "hsa-mir-124-3" "hsa-mir-1258"
## [17] "hsa-mir-1292" "hsa-mir-1304" "hsa-mir-141" "hsa-mir-153-1"
## [21] "hsa-mir-153-2" "hsa-mir-206" "hsa-mir-216a" "hsa-mir-219-1"
## [25] "hsa-mir-2277" "hsa-mir-26a-1" "hsa-mir-3191" "hsa-mir-3199-1"
## [29] "hsa-mir-320c-2" "hsa-mir-329-2" "hsa-mir-3682" "hsa-mir-383"
## [33] "hsa-mir-3909" "hsa-mir-3923" "hsa-mir-3926-1" "hsa-mir-3926-2"
## [37] "hsa-mir-3934" "hsa-mir-466" "hsa-mir-499" "hsa-mir-506"
## [41] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [45] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [49] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [53] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-516a-1" "hsa-mir-519a-2"
## [57] "hsa-mir-525" "hsa-mir-548s" "hsa-mir-548v" "hsa-mir-550a-2"
## [61] "hsa-mir-552" "hsa-mir-579" "hsa-mir-580" "hsa-mir-581"
## [65] "hsa-mir-592" "hsa-mir-605" "hsa-mir-615" "hsa-mir-624"
## [69] "hsa-mir-765" "hsa-mir-767" "hsa-mir-9-3"
## [1] "bicluster19"
## [1] "IGFBP2.RPPA" "ASNS.RPPA" "EGFR.RPPA" "INPP4B.RPPA"
## [5] "MYH11.RPPA" "ERBB3.R2Gn" "FN1.R2Gn" "CDKN1A.R2Gn"
## [9] "CTNNB1.R2Gn" "SHC1.R2Gn" "PARK7.R2Gn" "TGM2.R2Gn"
## [13] "BCL2L1.R2Gn" "TUBA1B.R2Gn" "YWHAB.R2Gn" "HSPA1A.R2Gn"
## [17] "SQSTM1.R2Gn" "hsa-mir-1197" "hsa-mir-122" "hsa-mir-1247"
## [21] "hsa-mir-1255a" "hsa-mir-1262" "hsa-mir-1269" "hsa-mir-1271"
## [25] "hsa-mir-1292" "hsa-mir-1293" "hsa-mir-1305" "hsa-mir-135a-2"
## [29] "hsa-mir-205" "hsa-mir-206" "hsa-mir-30c-1" "hsa-mir-3144"
## [33] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-3651"
## [37] "hsa-mir-3655" "hsa-mir-3682" "hsa-mir-370" "hsa-mir-380"
## [41] "hsa-mir-382" "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-3940"
## [45] "hsa-mir-411" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b"
## [49] "hsa-mir-496" "hsa-mir-499" "hsa-mir-516a-1" "hsa-mir-516a-2"
## [53] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-518c"
## [57] "hsa-mir-518f" "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"
## [61] "hsa-mir-525" "hsa-mir-526b" "hsa-mir-541" "hsa-mir-543"
## [65] "hsa-mir-551b" "hsa-mir-577" "hsa-mir-639" "hsa-mir-655"
## [69] "hsa-mir-656" "hsa-mir-668" "hsa-mir-889"
## [1] "bicluster38"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "FASN.RPPA" "PDCD4.RPPA"
## [5] "AR.RPPA" "GAPDH.RPPA" "MSH6.RPPA" "MSH2.RPPA"
## [9] "ERBB2.R2Gn" "KDR.R2Gn" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [13] "FASN.R2Gn" "PRKCA.R2Gn" "PIK3R1.R2Gn" "GAPDH.R2Gn"
## [17] "MYH9.R2Gn" "COL6A1.R2Gn" "PIK3R2.R2Gn" "HSPA1A.R2Gn"
## [21] "ERRFI1.R2Gn" "PARP1.R2Gn" "PREX1.R2Gn" "CHGA.R2Gn"
## [25] "hsa-let-7f-1" "hsa-mir-1179" "hsa-mir-1247" "hsa-mir-1287"
## [29] "hsa-mir-1293" "hsa-mir-1305" "hsa-mir-135a-1" "hsa-mir-135b"
## [33] "hsa-mir-187" "hsa-mir-194-1" "hsa-mir-194-2" "hsa-mir-200a"
## [37] "hsa-mir-202" "hsa-mir-204" "hsa-mir-2114" "hsa-mir-216b"
## [41] "hsa-mir-224" "hsa-mir-26a-1" "hsa-mir-3130-1" "hsa-mir-3170"
## [45] "hsa-mir-3173" "hsa-mir-320c-2" "hsa-mir-329-2" "hsa-mir-3652"
## [49] "hsa-mir-3662" "hsa-mir-3934" "hsa-mir-429" "hsa-mir-452"
## [53] "hsa-mir-487a" "hsa-mir-488" "hsa-mir-499" "hsa-mir-516a-1"
## [57] "hsa-mir-517a" "hsa-mir-518c" "hsa-mir-519a-2" "hsa-mir-548s"
## [61] "hsa-mir-551b" "hsa-mir-577" "hsa-mir-605" "hsa-mir-636"
## [65] "hsa-mir-767" "hsa-mir-873" "hsa-mir-876" "hsa-mir-9-1"
## [69] "hsa-mir-9-2" "hsa-mir-9-3" "hsa-mir-939"
## [1] "bicluster16"
## [1] "GATA3.RPPA" "PDCD4.RPPA" "PREX1.RPPA" "ERBB3.R2Gn"
## [5] "IGFBP2.R2Gn" "YWHAZ.R2Gn" "SERPINE1.R2Gn" "PRKCA.R2Gn"
## [9] "GAPDH.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn" "RBM3.R2Gn"
## [13] "RPTOR.R2Gn" "hsa-mir-105-1" "hsa-mir-105-2" "hsa-mir-1193"
## [17] "hsa-mir-1197" "hsa-mir-1224" "hsa-mir-1226" "hsa-mir-1228"
## [21] "hsa-mir-1245" "hsa-mir-1247" "hsa-mir-1270-1" "hsa-mir-135a-1"
## [25] "hsa-mir-184" "hsa-mir-187" "hsa-mir-1909" "hsa-mir-194-1"
## [29] "hsa-mir-194-2" "hsa-mir-199a-1" "hsa-mir-199a-2" "hsa-mir-200a"
## [33] "hsa-mir-200b" "hsa-mir-214" "hsa-mir-215" "hsa-mir-31"
## [37] "hsa-mir-323b" "hsa-mir-335" "hsa-mir-3678" "hsa-mir-3909"
## [41] "hsa-mir-3922" "hsa-mir-410" "hsa-mir-412" "hsa-mir-431"
## [45] "hsa-mir-432" "hsa-mir-4326" "hsa-mir-433" "hsa-mir-466"
## [49] "hsa-mir-483" "hsa-mir-487a" "hsa-mir-488" "hsa-mir-493"
## [53] "hsa-mir-504" "hsa-mir-506" "hsa-mir-507" "hsa-mir-510"
## [57] "hsa-mir-514-3" "hsa-mir-541" "hsa-mir-548q" "hsa-mir-550a-2"
## [61] "hsa-mir-585" "hsa-mir-607" "hsa-mir-656" "hsa-mir-668"
## [65] "hsa-mir-7-2" "hsa-mir-7-3" "hsa-mir-765" "hsa-mir-767"
## [69] "hsa-mir-873" "hsa-mir-876" "hsa-mir-937"
## [1] "bicluster34"
## [1] "RBM15.RPPA" "PEA15.RPPA" "FASN.RPPA" "PDCD4.RPPA"
## [5] "MSH6.RPPA" "TFRC.RPPA" "MSH2.RPPA" "DIRAS3.R2Gn"
## [9] "G6PD.R2Gn" "ERBB3.R2Gn" "RPS6KA1.R2Gn" "IGF1R.R2Gn"
## [13] "ADAR.R2Gn" "EEF2.R2Gn" "CTNNB1.R2Gn" "SHC1.R2Gn"
## [17] "TGM2.R2Gn" "GAPDH.R2Gn" "NRG1.R2Gn" "CHGA.R2Gn"
## [21] "hsa-mir-106a" "hsa-mir-1185-1" "hsa-mir-124-1" "hsa-mir-124-2"
## [25] "hsa-mir-124-3" "hsa-mir-1248" "hsa-mir-1251" "hsa-mir-1254"
## [29] "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1274b"
## [33] "hsa-mir-128-2" "hsa-mir-135a-2" "hsa-mir-135b" "hsa-mir-138-1"
## [37] "hsa-mir-141" "hsa-mir-1976" "hsa-mir-200b" "hsa-mir-218-1"
## [41] "hsa-mir-218-2" "hsa-mir-2277" "hsa-mir-296" "hsa-mir-3130-1"
## [45] "hsa-mir-3144" "hsa-mir-320c-2" "hsa-mir-34b" "hsa-mir-3614"
## [49] "hsa-mir-3648" "hsa-mir-3676" "hsa-mir-3682" "hsa-mir-3687"
## [53] "hsa-mir-3690" "hsa-mir-411" "hsa-mir-433" "hsa-mir-485"
## [57] "hsa-mir-487a" "hsa-mir-504" "hsa-mir-511-2" "hsa-mir-513a-2"
## [61] "hsa-mir-516a-2" "hsa-mir-518b" "hsa-mir-548q" "hsa-mir-552"
## [65] "hsa-mir-605" "hsa-mir-655" "hsa-mir-665" "hsa-mir-675"
## [69] "hsa-mir-887" "hsa-mir-939" "hsa-mir-940"
## [1] "bicluster42"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "PEA15.RPPA" "EGFR.RPPA"
## [5] "TSC1.RPPA" "PDCD4.RPPA" "ERCC1.RPPA" "TFRC.RPPA"
## [9] "IGFBP2.R2Gn" "CDH2.R2Gn" "SERPINE1.R2Gn" "CTNNB1.R2Gn"
## [13] "RPS6.R2Gn" "TGM2.R2Gn" "CTNNA1.R2Gn" "CCND1.R2Gn"
## [17] "NOTCH3.R2Gn" "PDK1.R2Gn" "NDRG1.R2Gn" "PIK3R2.R2Gn"
## [21] "SYP.R2Gn" "RPTOR.R2Gn" "hsa-mir-122" "hsa-mir-1226"
## [25] "hsa-mir-1255a" "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-129-1"
## [29] "hsa-mir-129-2" "hsa-mir-153-1" "hsa-mir-153-2" "hsa-mir-183"
## [33] "hsa-mir-187" "hsa-mir-1909" "hsa-mir-2114" "hsa-mir-216a"
## [37] "hsa-mir-26a-1" "hsa-mir-29a" "hsa-mir-29b-1" "hsa-mir-29b-2"
## [41] "hsa-mir-3065" "hsa-mir-3166" "hsa-mir-3173" "hsa-mir-320c-1"
## [45] "hsa-mir-320c-2" "hsa-mir-346" "hsa-mir-363" "hsa-mir-3651"
## [49] "hsa-mir-3662" "hsa-mir-3676" "hsa-mir-3687" "hsa-mir-3690"
## [53] "hsa-mir-378c" "hsa-mir-3922" "hsa-mir-3934" "hsa-mir-429"
## [57] "hsa-mir-490" "hsa-mir-510" "hsa-mir-548j" "hsa-mir-552"
## [61] "hsa-mir-570" "hsa-mir-642a" "hsa-mir-643" "hsa-mir-760"
## [65] "hsa-mir-765" "hsa-mir-766" "hsa-mir-876" "hsa-mir-885"
## [69] "hsa-mir-935" "hsa-mir-937" "hsa-mir-95"
## [1] "bicluster22"
## [1] "G6PD.RPPA" "GATA3.RPPA" "ATM.RPPA" "FASN.RPPA"
## [5] "AR.RPPA" "MYH11.RPPA" "ERBB3.R2Gn" "PEA15.R2Gn"
## [9] "XRCC5.R2Gn" "ADAR.R2Gn" "EEF2.R2Gn" "SERPINE1.R2Gn"
## [13] "PCNA.R2Gn" "CTNNB1.R2Gn" "ANLN.R2Gn" "SHC1.R2Gn"
## [17] "TGM2.R2Gn" "E2F1.R2Gn" "GAPDH.R2Gn" "TUBA1B.R2Gn"
## [21] "MYH9.R2Gn" "ERRFI1.R2Gn" "hsa-mir-105-1" "hsa-mir-105-2"
## [25] "hsa-mir-1228" "hsa-mir-1255a" "hsa-mir-133b" "hsa-mir-135a-2"
## [29] "hsa-mir-135b" "hsa-mir-137" "hsa-mir-187" "hsa-mir-200a"
## [33] "hsa-mir-200b" "hsa-mir-205" "hsa-mir-206" "hsa-mir-216a"
## [37] "hsa-mir-3166" "hsa-mir-3191" "hsa-mir-320c-2" "hsa-mir-3662"
## [41] "hsa-mir-3678" "hsa-mir-3682" "hsa-mir-3922" "hsa-mir-429"
## [45] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-510" "hsa-mir-516a-1"
## [49] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [53] "hsa-mir-518f" "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"
## [57] "hsa-mir-525" "hsa-mir-526b" "hsa-mir-548s" "hsa-mir-570"
## [61] "hsa-mir-579" "hsa-mir-605" "hsa-mir-607" "hsa-mir-618"
## [65] "hsa-mir-7-2" "hsa-mir-708" "hsa-mir-767" "hsa-mir-891a"
## [69] "hsa-mir-935" "hsa-mir-939" "hsa-mir-940"
## [1] "bicluster25"
## [1] "IGFBP2.RPPA" "PTEN.RPPA" "AR.RPPA" "GAPDH.RPPA"
## [5] "KDR.R2Gn" "IGFBP2.R2Gn" "YWHAZ.R2Gn" "ITGA2.R2Gn"
## [9] "PCNA.R2Gn" "CTNNB1.R2Gn" "PRRT2.R2Gn" "PIK3R1.R2Gn"
## [13] "BCL2L1.R2Gn" "GAPDH.R2Gn" "ANXA1.R2Gn" "ERRFI1.R2Gn"
## [17] "RET.R2Gn" "CDKN2A.R2Gn" "hsa-mir-1229" "hsa-mir-1258"
## [21] "hsa-mir-1262" "hsa-mir-1269" "hsa-mir-182" "hsa-mir-183"
## [25] "hsa-mir-190b" "hsa-mir-196a-2" "hsa-mir-196b" "hsa-mir-205"
## [29] "hsa-mir-296" "hsa-mir-301b" "hsa-mir-3166" "hsa-mir-3170"
## [33] "hsa-mir-3173" "hsa-mir-3187" "hsa-mir-320c-1" "hsa-mir-329-2"
## [37] "hsa-mir-3610" "hsa-mir-3620" "hsa-mir-3682" "hsa-mir-3687"
## [41] "hsa-mir-372" "hsa-mir-3917" "hsa-mir-3928" "hsa-mir-3934"
## [45] "hsa-mir-3940" "hsa-mir-483" "hsa-mir-491" "hsa-mir-494"
## [49] "hsa-mir-503" "hsa-mir-516a-1" "hsa-mir-517a" "hsa-mir-518c"
## [53] "hsa-mir-548q" "hsa-mir-551b" "hsa-mir-580" "hsa-mir-615"
## [57] "hsa-mir-624" "hsa-mir-636" "hsa-mir-642a" "hsa-mir-655"
## [61] "hsa-mir-656" "hsa-mir-663" "hsa-mir-675" "hsa-mir-7-3"
## [65] "hsa-mir-765" "hsa-mir-873" "hsa-mir-876" "hsa-mir-891a"
## [69] "hsa-mir-937" "hsa-mir-939" "hsa-mir-96"
## [1] "bicluster10"
## [1] "PEA15.RPPA" "ATM.RPPA" "EGFR.RPPA" "FASN.RPPA"
## [5] "TSC1.RPPA" "GAPDH.RPPA" "TFRC.RPPA" "MAPK14.R2Gn"
## [9] "CDH2.R2Gn" "MAPK1.R2Gn" "XRCC5.R2Gn" "FASN.R2Gn"
## [13] "EEF2.R2Gn" "SERPINE1.R2Gn" "CTNNB1.R2Gn" "ACACA.R2Gn"
## [17] "TGM2.R2Gn" "EEF2K.R2Gn" "PIK3R1.R2Gn" "PRDX1.R2Gn"
## [21] "GAPDH.R2Gn" "TUBA1B.R2Gn" "MYH11.R2Gn" "TFRC.R2Gn"
## [25] "PARP1.R2Gn" "CHGA.R2Gn" "hsa-mir-1224" "hsa-mir-1228"
## [29] "hsa-mir-1269" "hsa-mir-1274b" "hsa-mir-129-2" "hsa-mir-135b"
## [33] "hsa-mir-139" "hsa-mir-18a" "hsa-mir-203" "hsa-mir-205"
## [37] "hsa-mir-2114" "hsa-mir-218-1" "hsa-mir-3173" "hsa-mir-3190"
## [41] "hsa-mir-3651" "hsa-mir-3655" "hsa-mir-3922" "hsa-mir-3923"
## [45] "hsa-mir-3926-2" "hsa-mir-3940" "hsa-mir-4326" "hsa-mir-490"
## [49] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [53] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [57] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [61] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-519a-2" "hsa-mir-525"
## [65] "hsa-mir-585" "hsa-mir-618" "hsa-mir-659" "hsa-mir-665"
## [69] "hsa-mir-670" "hsa-mir-767" "hsa-mir-876"
## [1] "bicluster2"
## [1] "GATA3.RPPA" "TTF1.RPPA" "MYH11.RPPA" "TFRC.RPPA"
## [5] "DIRAS3.R2Gn" "SRC.R2Gn" "CTNNB1.R2Gn" "PIK3R1.R2Gn"
## [9] "BCL2L1.R2Gn" "TYMS.R2Gn" "TFRC.R2Gn" "HSPA1A.R2Gn"
## [13] "RET.R2Gn" "SQSTM1.R2Gn" "hsa-let-7f-1" "hsa-mir-1-2"
## [17] "hsa-mir-1185-1" "hsa-mir-1197" "hsa-mir-1228" "hsa-mir-124-1"
## [21] "hsa-mir-124-2" "hsa-mir-124-3" "hsa-mir-1251" "hsa-mir-1270-1"
## [25] "hsa-mir-134" "hsa-mir-154" "hsa-mir-299" "hsa-mir-301b"
## [29] "hsa-mir-3193" "hsa-mir-3199-1" "hsa-mir-323" "hsa-mir-323b"
## [33] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-335" "hsa-mir-346"
## [37] "hsa-mir-3610" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [41] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-382"
## [45] "hsa-mir-3912" "hsa-mir-3922" "hsa-mir-411" "hsa-mir-485"
## [49] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-516a-1" "hsa-mir-519a-2"
## [53] "hsa-mir-541" "hsa-mir-543" "hsa-mir-561" "hsa-mir-570"
## [57] "hsa-mir-580" "hsa-mir-585" "hsa-mir-655" "hsa-mir-656"
## [61] "hsa-mir-663" "hsa-mir-668" "hsa-mir-7-2" "hsa-mir-758"
## [65] "hsa-mir-765" "hsa-mir-767" "hsa-mir-770" "hsa-mir-873"
## [69] "hsa-mir-876" "hsa-mir-937" "hsa-mir-939"
## [1] "bicluster13"
## [1] "ASNS.RPPA" "GATA3.RPPA" "ATM.RPPA" "GAPDH.RPPA"
## [5] "FN1.R2Gn" "AKT2.R2Gn" "EEF2.R2Gn" "ACVRL1.R2Gn"
## [9] "RPS6.R2Gn" "PDCD4.R2Gn" "JUN.R2Gn" "STAT3.R2Gn"
## [13] "FOXO3.R2Gn" "PARK7.R2Gn" "RAB11A.R2Gn" "ACACB.R2Gn"
## [17] "CCND1.R2Gn" "COL6A1.R2Gn" "ANXA1.R2Gn" "TFRC.R2Gn"
## [21] "HSPA1A.R2Gn" "SYP.R2Gn" "hsa-mir-105-2" "hsa-mir-1193"
## [25] "hsa-mir-124-2" "hsa-mir-124-3" "hsa-mir-125b-1" "hsa-mir-1262"
## [29] "hsa-mir-146b" "hsa-mir-184" "hsa-mir-196a-2" "hsa-mir-196b"
## [33] "hsa-mir-202" "hsa-mir-205" "hsa-mir-206" "hsa-mir-21"
## [37] "hsa-mir-2355" "hsa-mir-31" "hsa-mir-3190" "hsa-mir-320c-2"
## [41] "hsa-mir-346" "hsa-mir-34b" "hsa-mir-3676" "hsa-mir-3678"
## [45] "hsa-mir-3682" "hsa-mir-372" "hsa-mir-380" "hsa-mir-383"
## [49] "hsa-mir-412" "hsa-mir-466" "hsa-mir-488" "hsa-mir-490"
## [53] "hsa-mir-510" "hsa-mir-511-1" "hsa-mir-511-2" "hsa-mir-516a-2"
## [57] "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-518f" "hsa-mir-519a-1"
## [61] "hsa-mir-519a-2" "hsa-mir-544" "hsa-mir-548b" "hsa-mir-582"
## [65] "hsa-mir-592" "hsa-mir-605" "hsa-mir-618" "hsa-mir-653"
## [69] "hsa-mir-7-2" "hsa-mir-891a" "hsa-mir-937"
## [1] "bicluster29"
## [1] "ASNS.RPPA" "PTEN.RPPA" "PEA15.RPPA" "EGFR.RPPA"
## [5] "FASN.RPPA" "ACVRL1.RPPA" "TTF1.RPPA" "CDK1.RPPA"
## [9] "TFRC.RPPA" "MSH2.RPPA" "PREX1.RPPA" "ERBB3.R2Gn"
## [13] "CDH2.R2Gn" "GATA3.R2Gn" "PEA15.R2Gn" "MAPK1.R2Gn"
## [17] "ITGA2.R2Gn" "ADAR.R2Gn" "FASN.R2Gn" "YWHAE.R2Gn"
## [21] "CTNNB1.R2Gn" "PRKCA.R2Gn" "PDCD4.R2Gn" "CCND1.R2Gn"
## [25] "KRAS.R2Gn" "COL6A1.R2Gn" "PIK3R2.R2Gn" "HSPA1A.R2Gn"
## [29] "PXN.R2Gn" "PREX1.R2Gn" "hsa-mir-100" "hsa-mir-1185-1"
## [33] "hsa-mir-1248" "hsa-mir-1258" "hsa-mir-1262" "hsa-mir-1270-2"
## [37] "hsa-mir-135a-1" "hsa-mir-139" "hsa-mir-182" "hsa-mir-183"
## [41] "hsa-mir-187" "hsa-mir-196b" "hsa-mir-206" "hsa-mir-3144"
## [45] "hsa-mir-3166" "hsa-mir-3170" "hsa-mir-3199-1" "hsa-mir-320c-2"
## [49] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-335" "hsa-mir-338"
## [53] "hsa-mir-3619" "hsa-mir-3678" "hsa-mir-3682" "hsa-mir-424"
## [57] "hsa-mir-433" "hsa-mir-483" "hsa-mir-487a" "hsa-mir-488"
## [61] "hsa-mir-517a" "hsa-mir-525" "hsa-mir-541" "hsa-mir-548s"
## [65] "hsa-mir-592" "hsa-mir-668" "hsa-mir-7-3" "hsa-mir-876"
## [69] "hsa-mir-939" "hsa-mir-940" "hsa-mir-96"
## [1] "bicluster7"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "ASNS.RPPA" "RBM15.RPPA"
## [5] "GATA3.RPPA" "ATM.RPPA" "EGFR.RPPA" "PCNA.RPPA"
## [9] "GAPDH.RPPA" "PDK1.RPPA" "TFRC.RPPA" "G6PD.R2Gn"
## [13] "KDR.R2Gn" "ERBB3.R2Gn" "FN1.R2Gn" "EEF2.R2Gn"
## [17] "SERPINE1.R2Gn" "CCND1.R2Gn" "GAPDH.R2Gn" "NOTCH3.R2Gn"
## [21] "SYP.R2Gn" "PARP1.R2Gn" "IDH3A.R2Gn" "hsa-mir-105-1"
## [25] "hsa-mir-105-2" "hsa-mir-1185-1" "hsa-mir-1226" "hsa-mir-1254"
## [29] "hsa-mir-1293" "hsa-mir-141" "hsa-mir-149" "hsa-mir-184"
## [33] "hsa-mir-203" "hsa-mir-2114" "hsa-mir-218-1" "hsa-mir-30c-1"
## [37] "hsa-mir-3130-1" "hsa-mir-3166" "hsa-mir-3191" "hsa-mir-345"
## [41] "hsa-mir-3647" "hsa-mir-3662" "hsa-mir-3678" "hsa-mir-377"
## [45] "hsa-mir-3909" "hsa-mir-3922" "hsa-mir-3926-1" "hsa-mir-450a-1"
## [49] "hsa-mir-485" "hsa-mir-494" "hsa-mir-507" "hsa-mir-510"
## [53] "hsa-mir-511-2" "hsa-mir-513a-2" "hsa-mir-514-1" "hsa-mir-514-2"
## [57] "hsa-mir-514-3" "hsa-mir-516b-1" "hsa-mir-518b" "hsa-mir-543"
## [61] "hsa-mir-548j" "hsa-mir-548q" "hsa-mir-548v" "hsa-mir-550a-2"
## [65] "hsa-mir-582" "hsa-mir-585" "hsa-mir-627" "hsa-mir-643"
## [69] "hsa-mir-655" "hsa-mir-891a" "hsa-mir-937"
## [1] "bicluster31"
## [1] "G6PD.RPPA" "RBM15.RPPA" "ATM.RPPA" "EGFR.RPPA"
## [5] "TSC1.RPPA" "GAPDH.RPPA" "MYH11.RPPA" "TFRC.RPPA"
## [9] "ERBB3.R2Gn" "CDKN1A.R2Gn" "YWHAZ.R2Gn" "YWHAE.R2Gn"
## [13] "CTNNB1.R2Gn" "YBX1.R2Gn" "RPS6.R2Gn" "PDCD4.R2Gn"
## [17] "STMN1.R2Gn" "TGM2.R2Gn" "PIK3R1.R2Gn" "GAPDH.R2Gn"
## [21] "HSPA1A.R2Gn" "PXN.R2Gn" "RET.R2Gn" "CHGA.R2Gn"
## [25] "hsa-mir-105-2" "hsa-mir-1185-1" "hsa-mir-1193" "hsa-mir-1249"
## [29] "hsa-mir-1293" "hsa-mir-135a-1" "hsa-mir-135a-2" "hsa-mir-200a"
## [33] "hsa-mir-200b" "hsa-mir-210" "hsa-mir-218-1" "hsa-mir-3130-1"
## [37] "hsa-mir-3173" "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-33b"
## [41] "hsa-mir-3610" "hsa-mir-3651" "hsa-mir-3652" "hsa-mir-3682"
## [45] "hsa-mir-3687" "hsa-mir-372" "hsa-mir-376a-1" "hsa-mir-380"
## [49] "hsa-mir-3909" "hsa-mir-3922" "hsa-mir-3928" "hsa-mir-3934"
## [53] "hsa-mir-3940" "hsa-mir-484" "hsa-mir-499" "hsa-mir-516a-1"
## [57] "hsa-mir-518c" "hsa-mir-525" "hsa-mir-544" "hsa-mir-545"
## [61] "hsa-mir-550a-2" "hsa-mir-579" "hsa-mir-580" "hsa-mir-581"
## [65] "hsa-mir-585" "hsa-mir-605" "hsa-mir-624" "hsa-mir-656"
## [69] "hsa-mir-7-2" "hsa-mir-7-3" "hsa-mir-767"
## [1] "bicluster43"
## [1] "PTEN.RPPA" "PEA15.RPPA" "FASN.RPPA" "PDCD4.RPPA"
## [5] "TTF1.RPPA" "AR.RPPA" "GAPDH.RPPA" "MSH6.RPPA"
## [9] "MSH2.RPPA" "KDR.R2Gn" "ERBB3.R2Gn" "FN1.R2Gn"
## [13] "AKT2.R2Gn" "CDKN1A.R2Gn" "GATA3.R2Gn" "ADAR.R2Gn"
## [17] "FASN.R2Gn" "EEF2.R2Gn" "SERPINE1.R2Gn" "BCL2L1.R2Gn"
## [21] "PXN.R2Gn" "RET.R2Gn" "hsa-mir-1269" "hsa-mir-129-1"
## [25] "hsa-mir-129-2" "hsa-mir-1291" "hsa-mir-135a-2" "hsa-mir-138-2"
## [29] "hsa-mir-184" "hsa-mir-190b" "hsa-mir-196a-2" "hsa-mir-200a"
## [33] "hsa-mir-200b" "hsa-mir-2114" "hsa-mir-216a" "hsa-mir-217"
## [37] "hsa-mir-31" "hsa-mir-3170" "hsa-mir-3191" "hsa-mir-3193"
## [41] "hsa-mir-320c-2" "hsa-mir-3610" "hsa-mir-3619" "hsa-mir-3655"
## [45] "hsa-mir-3687" "hsa-mir-3690" "hsa-mir-3909" "hsa-mir-3923"
## [49] "hsa-mir-412" "hsa-mir-4326" "hsa-mir-466" "hsa-mir-488"
## [53] "hsa-mir-499" "hsa-mir-504" "hsa-mir-510" "hsa-mir-517a"
## [57] "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-548q" "hsa-mir-552"
## [61] "hsa-mir-585" "hsa-mir-607" "hsa-mir-615" "hsa-mir-629"
## [65] "hsa-mir-636" "hsa-mir-670" "hsa-mir-7-2" "hsa-mir-767"
## [69] "hsa-mir-873" "hsa-mir-876" "hsa-mir-95"
## [1] "bicluster27"
## [1] "PTEN.RPPA" "GATA3.RPPA" "PEA15.RPPA" "ACVRL1.RPPA"
## [5] "GAPDH.RPPA" "NF2.RPPA" "ERBB3.R2Gn" "FN1.R2Gn"
## [9] "CDH2.R2Gn" "BECN1.R2Gn" "GATA3.R2Gn" "SERPINE1.R2Gn"
## [13] "CTNNB1.R2Gn" "MAPT.R2Gn" "STMN1.R2Gn" "CCND1.R2Gn"
## [17] "PDK1.R2Gn" "NDRG1.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn"
## [21] "SYP.R2Gn" "PARP1.R2Gn" "CHGA.R2Gn" "IDH3A.R2Gn"
## [25] "hsa-mir-105-2" "hsa-mir-1245" "hsa-mir-1255a" "hsa-mir-1270-1"
## [29] "hsa-mir-1270-2" "hsa-mir-1296" "hsa-mir-133b" "hsa-mir-141"
## [33] "hsa-mir-184" "hsa-mir-2114" "hsa-mir-216b" "hsa-mir-296"
## [37] "hsa-mir-29c" "hsa-mir-329-2" "hsa-mir-3923" "hsa-mir-3928"
## [41] "hsa-mir-3934" "hsa-mir-483" "hsa-mir-499" "hsa-mir-506"
## [45] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [49] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-511-1" "hsa-mir-511-2"
## [53] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [57] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [61] "hsa-mir-516a-1" "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-561"
## [65] "hsa-mir-570" "hsa-mir-579" "hsa-mir-580" "hsa-mir-618"
## [69] "hsa-mir-675" "hsa-mir-767" "hsa-mir-891a"
## [1] "bicluster20"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "AR.RPPA" "MSH6.RPPA"
## [5] "MSH2.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn"
## [9] "AKT3.R2Gn" "RAD51.R2Gn" "BECN1.R2Gn" "CDKN1A.R2Gn"
## [13] "EIF4G1.R2Gn" "BIRC2.R2Gn" "ADAR.R2Gn" "RPS6.R2Gn"
## [17] "ANLN.R2Gn" "STMN1.R2Gn" "TGM2.R2Gn" "CDK1.R2Gn"
## [21] "E2F1.R2Gn" "CTNNA1.R2Gn" "RAD50.R2Gn" "MYC.R2Gn"
## [25] "CAV1.R2Gn" "TYMS.R2Gn" "CCNB1.R2Gn" "TUBA1B.R2Gn"
## [29] "FOXM1.R2Gn" "COL6A1.R2Gn" "YWHAB.R2Gn" "EZH2.R2Gn"
## [33] "BID.R2Gn" "TFRC.R2Gn" "CCNE2.R2Gn" "SYK.R2Gn"
## [37] "CDKN2A.R2Gn" "hsa-mir-1245" "hsa-mir-1247" "hsa-mir-1262"
## [41] "hsa-mir-135a-1" "hsa-mir-135a-2" "hsa-mir-135b" "hsa-mir-138-1"
## [45] "hsa-mir-138-2" "hsa-mir-187" "hsa-mir-200a" "hsa-mir-200b"
## [49] "hsa-mir-202" "hsa-mir-216a" "hsa-mir-26a-1" "hsa-mir-29c"
## [53] "hsa-mir-3130-1" "hsa-mir-3144" "hsa-mir-3170" "hsa-mir-3190"
## [57] "hsa-mir-3191" "hsa-mir-3199-1" "hsa-mir-372" "hsa-mir-3923"
## [61] "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-466" "hsa-mir-499"
## [65] "hsa-mir-507" "hsa-mir-516b-1" "hsa-mir-548b" "hsa-mir-592"
## [69] "hsa-mir-639" "hsa-mir-765" "hsa-mir-876"
## [1] "bicluster37"
## [1] "G6PD.RPPA" "ATM.RPPA" "FASN.RPPA" "TTF1.RPPA"
## [5] "VHL.RPPA" "GAPDH.RPPA" "MSH6.RPPA" "PREX1.RPPA"
## [9] "DIRAS3.R2Gn" "ADAR.R2Gn" "FASN.R2Gn" "CTNNB1.R2Gn"
## [13] "RPS6.R2Gn" "PDCD4.R2Gn" "FOXO3.R2Gn" "GAPDH.R2Gn"
## [17] "COL6A1.R2Gn" "NDRG1.R2Gn" "RBM3.R2Gn" "SQSTM1.R2Gn"
## [21] "hsa-mir-105-2" "hsa-mir-1247" "hsa-mir-1255a" "hsa-mir-129-1"
## [25] "hsa-mir-1292" "hsa-mir-137" "hsa-mir-138-2" "hsa-mir-146a"
## [29] "hsa-mir-150" "hsa-mir-196a-2" "hsa-mir-210" "hsa-mir-216a"
## [33] "hsa-mir-218-1" "hsa-mir-3190" "hsa-mir-3191" "hsa-mir-3199-2"
## [37] "hsa-mir-329-2" "hsa-mir-3620" "hsa-mir-3662" "hsa-mir-3687"
## [41] "hsa-mir-3922" "hsa-mir-3934" "hsa-mir-4326" "hsa-mir-488"
## [45] "hsa-mir-489" "hsa-mir-499" "hsa-mir-504" "hsa-mir-506"
## [49] "hsa-mir-507" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [53] "hsa-mir-513b" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518c"
## [57] "hsa-mir-519a-2" "hsa-mir-548q" "hsa-mir-548s" "hsa-mir-584"
## [61] "hsa-mir-605" "hsa-mir-615" "hsa-mir-653" "hsa-mir-656"
## [65] "hsa-mir-675" "hsa-mir-760" "hsa-mir-770" "hsa-mir-873"
## [69] "hsa-mir-876" "hsa-mir-9-1" "hsa-mir-9-2"
## [1] "bicluster5"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "ASNS.RPPA" "RBM15.RPPA"
## [5] "PEA15.RPPA" "ATM.RPPA" "EGFR.RPPA" "FASN.RPPA"
## [9] "TSC1.RPPA" "GAPDH.RPPA" "TFRC.RPPA" "KDR.R2Gn"
## [13] "IGFBP2.R2Gn" "CDKN1A.R2Gn" "PEA15.R2Gn" "ADAR.R2Gn"
## [17] "EEF2.R2Gn" "RPS6.R2Gn" "SHC1.R2Gn" "GAPDH.R2Gn"
## [21] "COL6A1.R2Gn" "ANXA1.R2Gn" "TFRC.R2Gn" "HSPA1A.R2Gn"
## [25] "ERRFI1.R2Gn" "RBM3.R2Gn" "SNAI2.R2Gn" "hsa-mir-1179"
## [29] "hsa-mir-1255a" "hsa-mir-1305" "hsa-mir-130a" "hsa-mir-138-1"
## [33] "hsa-mir-184" "hsa-mir-200a" "hsa-mir-200b" "hsa-mir-202"
## [37] "hsa-mir-205" "hsa-mir-206" "hsa-mir-216b" "hsa-mir-217"
## [41] "hsa-mir-218-1" "hsa-mir-218-2" "hsa-mir-219-1" "hsa-mir-26a-1"
## [45] "hsa-mir-27b" "hsa-mir-296" "hsa-mir-3173" "hsa-mir-3190"
## [49] "hsa-mir-3193" "hsa-mir-3199-1" "hsa-mir-34b" "hsa-mir-3610"
## [53] "hsa-mir-3655" "hsa-mir-3676" "hsa-mir-3687" "hsa-mir-3909"
## [57] "hsa-mir-3917" "hsa-mir-3923" "hsa-mir-3926-1" "hsa-mir-3940"
## [61] "hsa-mir-429" "hsa-mir-454" "hsa-mir-504" "hsa-mir-518f"
## [65] "hsa-mir-544" "hsa-mir-548q" "hsa-mir-552" "hsa-mir-580"
## [69] "hsa-mir-615" "hsa-mir-636" "hsa-mir-670"
## [1] "bicluster28"
## [1] "GATA3.RPPA" "TFRC.RPPA" "G6PD.R2Gn" "ERBB3.R2Gn"
## [5] "IGFBP2.R2Gn" "FN1.R2Gn" "CCND1.R2Gn" "BCL2L1.R2Gn"
## [9] "GAPDH.R2Gn" "MYH9.R2Gn" "TFRC.R2Gn" "HSPA1A.R2Gn"
## [13] "ERRFI1.R2Gn" "PARP1.R2Gn" "BAD.R2Gn" "hsa-mir-1185-1"
## [17] "hsa-mir-1193" "hsa-mir-1197" "hsa-mir-1224" "hsa-mir-1249"
## [21] "hsa-mir-1254" "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-1270-2"
## [25] "hsa-mir-1274b" "hsa-mir-1292" "hsa-mir-135a-1" "hsa-mir-137"
## [29] "hsa-mir-138-1" "hsa-mir-138-2" "hsa-mir-139" "hsa-mir-141"
## [33] "hsa-mir-296" "hsa-mir-31" "hsa-mir-3173" "hsa-mir-3190"
## [37] "hsa-mir-320c-1" "hsa-mir-329-1" "hsa-mir-338" "hsa-mir-346"
## [41] "hsa-mir-3610" "hsa-mir-3687" "hsa-mir-376a-2" "hsa-mir-380"
## [45] "hsa-mir-3926-1" "hsa-mir-3940" "hsa-mir-411" "hsa-mir-429"
## [49] "hsa-mir-432" "hsa-mir-433" "hsa-mir-466" "hsa-mir-485"
## [53] "hsa-mir-488" "hsa-mir-489" "hsa-mir-490" "hsa-mir-493"
## [57] "hsa-mir-499" "hsa-mir-525" "hsa-mir-541" "hsa-mir-543"
## [61] "hsa-mir-580" "hsa-mir-607" "hsa-mir-615" "hsa-mir-665"
## [65] "hsa-mir-670" "hsa-mir-760" "hsa-mir-770" "hsa-mir-885"
## [69] "hsa-mir-9-3" "hsa-mir-939" "hsa-mir-99b"
## [1] "bicluster9"
## [1] "G6PD.RPPA" "ASNS.RPPA" "GATA3.RPPA" "EGFR.RPPA"
## [5] "INPP4B.RPPA" "TTF1.RPPA" "VHL.RPPA" "MYH11.RPPA"
## [9] "NF2.RPPA" "TFRC.RPPA" "G6PD.R2Gn" "FN1.R2Gn"
## [13] "CDH2.R2Gn" "FOXO3.R2Gn" "TGM2.R2Gn" "PRRT2.R2Gn"
## [17] "BCL2L1.R2Gn" "MYH9.R2Gn" "TFRC.R2Gn" "HSPA1A.R2Gn"
## [21] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1228"
## [25] "hsa-mir-1247" "hsa-mir-1269" "hsa-mir-1271" "hsa-mir-1304"
## [29] "hsa-mir-134" "hsa-mir-138-1" "hsa-mir-141" "hsa-mir-154"
## [33] "hsa-mir-206" "hsa-mir-2277" "hsa-mir-301b" "hsa-mir-31"
## [37] "hsa-mir-320c-2" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [41] "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-3652" "hsa-mir-370"
## [45] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-377" "hsa-mir-3917"
## [49] "hsa-mir-3926-2" "hsa-mir-411" "hsa-mir-433" "hsa-mir-485"
## [53] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-499" "hsa-mir-516a-1"
## [57] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518c" "hsa-mir-520a"
## [61] "hsa-mir-525" "hsa-mir-548v" "hsa-mir-577" "hsa-mir-607"
## [65] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-668"
## [69] "hsa-mir-670" "hsa-mir-7-2" "hsa-mir-770"
## [1] "bicluster12"
## [1] "IGFBP2.RPPA" "TTF1.RPPA" "GAPDH.RPPA" "MSH6.RPPA"
## [5] "MYH11.RPPA" "TFRC.RPPA" "MSH2.RPPA" "ERBB3.R2Gn"
## [9] "IGFBP2.R2Gn" "CDKN1A.R2Gn" "CCNE1.R2Gn" "SERPINE1.R2Gn"
## [13] "PDCD4.R2Gn" "STMN1.R2Gn" "HSPA1A.R2Gn" "RBM3.R2Gn"
## [17] "SNAI2.R2Gn" "SQSTM1.R2Gn" "hsa-mir-105-1" "hsa-mir-1185-1"
## [21] "hsa-mir-1226" "hsa-mir-1249" "hsa-mir-1255a" "hsa-mir-1262"
## [25] "hsa-mir-1269" "hsa-mir-129-2" "hsa-mir-1292" "hsa-mir-1293"
## [29] "hsa-mir-196a-2" "hsa-mir-200a" "hsa-mir-26a-1" "hsa-mir-29c"
## [33] "hsa-mir-31" "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-34a"
## [37] "hsa-mir-34b" "hsa-mir-3655" "hsa-mir-3677" "hsa-mir-3687"
## [41] "hsa-mir-377" "hsa-mir-3923" "hsa-mir-3934" "hsa-mir-411"
## [45] "hsa-mir-429" "hsa-mir-4326" "hsa-mir-483" "hsa-mir-487a"
## [49] "hsa-mir-489" "hsa-mir-494" "hsa-mir-510" "hsa-mir-511-1"
## [53] "hsa-mir-548q" "hsa-mir-552" "hsa-mir-561" "hsa-mir-579"
## [57] "hsa-mir-615" "hsa-mir-624" "hsa-mir-655" "hsa-mir-656"
## [61] "hsa-mir-663" "hsa-mir-668" "hsa-mir-670" "hsa-mir-675"
## [65] "hsa-mir-765" "hsa-mir-767" "hsa-mir-891a" "hsa-mir-9-1"
## [69] "hsa-mir-9-2" "hsa-mir-9-3" "hsa-mir-937"
## [1] "bicluster1"
## [1] "G6PD.RPPA" "BRCA2.RPPA" "FASN.RPPA" "ACVRL1.RPPA"
## [5] "GAPDH.RPPA" "TFRC.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn"
## [9] "NFE2L2.R2Gn" "PRKCA.R2Gn" "PDCD4.R2Gn" "GAPDH.R2Gn"
## [13] "PREX1.R2Gn" "hsa-mir-105-1" "hsa-mir-106a" "hsa-mir-1193"
## [17] "hsa-mir-1228" "hsa-mir-124-3" "hsa-mir-1245" "hsa-mir-1269"
## [21] "hsa-mir-1270-2" "hsa-mir-1271" "hsa-mir-1274b" "hsa-mir-1292"
## [25] "hsa-mir-135a-1" "hsa-mir-135a-2" "hsa-mir-139" "hsa-mir-144"
## [29] "hsa-mir-187" "hsa-mir-215" "hsa-mir-216b" "hsa-mir-24-2"
## [33] "hsa-mir-26a-1" "hsa-mir-296" "hsa-mir-30c-1" "hsa-mir-3130-1"
## [37] "hsa-mir-3173" "hsa-mir-320c-1" "hsa-mir-329-1" "hsa-mir-346"
## [41] "hsa-mir-34b" "hsa-mir-3614" "hsa-mir-3615" "hsa-mir-3619"
## [45] "hsa-mir-3690" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-380"
## [49] "hsa-mir-3912" "hsa-mir-433" "hsa-mir-451" "hsa-mir-485"
## [53] "hsa-mir-511-1" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-520a"
## [57] "hsa-mir-525" "hsa-mir-541" "hsa-mir-545" "hsa-mir-548s"
## [61] "hsa-mir-570" "hsa-mir-580" "hsa-mir-592" "hsa-mir-605"
## [65] "hsa-mir-607" "hsa-mir-618" "hsa-mir-636" "hsa-mir-639"
## [69] "hsa-mir-655" "hsa-mir-765" "hsa-mir-770"
## [1] "bicluster23"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "PTEN.RPPA" "EGFR.RPPA"
## [5] "FASN.RPPA" "TTF1.RPPA" "IRS1.RPPA" "MYH11.RPPA"
## [9] "PDK1.RPPA" "ERCC1.RPPA" "YAP1.R2Gn" "FN1.R2Gn"
## [13] "SRC.R2Gn" "AKT1.R2Gn" "PEA15.R2Gn" "ITGA2.R2Gn"
## [17] "ADAR.R2Gn" "EGFR.R2Gn" "FASN.R2Gn" "SHC1.R2Gn"
## [21] "FOXO3.R2Gn" "PARK7.R2Gn" "IRS1.R2Gn" "PIK3R1.R2Gn"
## [25] "TUBA1B.R2Gn" "ERRFI1.R2Gn" "SYP.R2Gn" "RPTOR.R2Gn"
## [29] "ANXA7.R2Gn" "CHGA.R2Gn" "hsa-mir-1179" "hsa-mir-1251"
## [33] "hsa-mir-129-1" "hsa-mir-135a-1" "hsa-mir-138-2" "hsa-mir-187"
## [37] "hsa-mir-196a-1" "hsa-mir-196a-2" "hsa-mir-219-1" "hsa-mir-2277"
## [41] "hsa-mir-26a-1" "hsa-mir-301b" "hsa-mir-30c-1" "hsa-mir-3173"
## [45] "hsa-mir-3190" "hsa-mir-320c-2" "hsa-mir-3610" "hsa-mir-3651"
## [49] "hsa-mir-3652" "hsa-mir-3655" "hsa-mir-3676" "hsa-mir-3687"
## [53] "hsa-mir-3909" "hsa-mir-3926-1" "hsa-mir-429" "hsa-mir-516a-1"
## [57] "hsa-mir-548s" "hsa-mir-548v" "hsa-mir-551b" "hsa-mir-570"
## [61] "hsa-mir-605" "hsa-mir-607" "hsa-mir-636" "hsa-mir-659"
## [65] "hsa-mir-663" "hsa-mir-7-2" "hsa-mir-708" "hsa-mir-767"
## [69] "hsa-mir-9-3" "hsa-mir-935" "hsa-mir-940"
## [1] "bicluster4"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "EGFR.RPPA" "IRS1.RPPA"
## [5] "G6PD.R2Gn" "IGFBP2.R2Gn" "MET.R2Gn" "MAPK1.R2Gn"
## [9] "FASN.R2Gn" "EEF2.R2Gn" "RPS6.R2Gn" "PTK2.R2Gn"
## [13] "KEAP1.R2Gn" "CCND1.R2Gn" "MYH9.R2Gn" "PIK3R2.R2Gn"
## [17] "TFRC.R2Gn" "ERRFI1.R2Gn" "SYP.R2Gn" "SNAI2.R2Gn"
## [21] "hsa-mir-105-1" "hsa-mir-105-2" "hsa-mir-1224" "hsa-mir-1247"
## [25] "hsa-mir-1248" "hsa-mir-1249" "hsa-mir-1270-1" "hsa-mir-1291"
## [29] "hsa-mir-135b" "hsa-mir-200a" "hsa-mir-200b" "hsa-mir-204"
## [33] "hsa-mir-206" "hsa-mir-2114" "hsa-mir-216b" "hsa-mir-217"
## [37] "hsa-mir-218-1" "hsa-mir-301b" "hsa-mir-31" "hsa-mir-3173"
## [41] "hsa-mir-3191" "hsa-mir-320c-2" "hsa-mir-326" "hsa-mir-346"
## [45] "hsa-mir-34b" "hsa-mir-3610" "hsa-mir-3614" "hsa-mir-3620"
## [49] "hsa-mir-3676" "hsa-mir-3909" "hsa-mir-3923" "hsa-mir-4326"
## [53] "hsa-mir-489" "hsa-mir-511-1" "hsa-mir-511-2" "hsa-mir-516a-1"
## [57] "hsa-mir-516a-2" "hsa-mir-545" "hsa-mir-548j" "hsa-mir-548s"
## [61] "hsa-mir-552" "hsa-mir-561" "hsa-mir-580" "hsa-mir-584"
## [65] "hsa-mir-615" "hsa-mir-627" "hsa-mir-642a" "hsa-mir-675"
## [69] "hsa-mir-891a" "hsa-mir-9-1" "hsa-mir-9-2"
## [1] "bicluster36"
## [1] "IGFBP2.RPPA" "ASNS.RPPA" "EGFR.RPPA" "ACVRL1.RPPA"
## [5] "TTF1.RPPA" "TFRC.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn"
## [9] "AKT1.R2Gn" "GATA3.R2Gn" "MAPK1.R2Gn" "ITGA2.R2Gn"
## [13] "LCN2.R2Gn" "KIT.R2Gn" "MYH9.R2Gn" "COL6A1.R2Gn"
## [17] "ANXA1.R2Gn" "TFRC.R2Gn" "HSPA1A.R2Gn" "SYP.R2Gn"
## [21] "RET.R2Gn" "CHGA.R2Gn" "hsa-mir-1179" "hsa-mir-1193"
## [25] "hsa-mir-122" "hsa-mir-124-2" "hsa-mir-124-3" "hsa-mir-1248"
## [29] "hsa-mir-1249" "hsa-mir-1251" "hsa-mir-1254" "hsa-mir-1255a"
## [33] "hsa-mir-1262" "hsa-mir-1274b" "hsa-mir-1305" "hsa-mir-135a-2"
## [37] "hsa-mir-184" "hsa-mir-187" "hsa-mir-2114" "hsa-mir-30c-1"
## [41] "hsa-mir-3173" "hsa-mir-3187" "hsa-mir-3199-1" "hsa-mir-3199-2"
## [45] "hsa-mir-320c-2" "hsa-mir-3610" "hsa-mir-3676" "hsa-mir-372"
## [49] "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-429" "hsa-mir-433"
## [53] "hsa-mir-452" "hsa-mir-504" "hsa-mir-516a-1" "hsa-mir-517a"
## [57] "hsa-mir-544" "hsa-mir-548j" "hsa-mir-548v" "hsa-mir-551b"
## [61] "hsa-mir-552" "hsa-mir-577" "hsa-mir-585" "hsa-mir-607"
## [65] "hsa-mir-639" "hsa-mir-659" "hsa-mir-7-3" "hsa-mir-876"
## [69] "hsa-mir-9-1" "hsa-mir-9-2" "hsa-mir-9-3"
## [1] "bicluster14"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "IRS1.RPPA" "NF2.RPPA"
## [5] "ERBB3.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn" "MET.R2Gn"
## [9] "NOTCH1.R2Gn" "YWHAZ.R2Gn" "CCNE1.R2Gn" "FASN.R2Gn"
## [13] "EEF2.R2Gn" "ACVRL1.R2Gn" "CTNNB1.R2Gn" "STMN1.R2Gn"
## [17] "FOXO3.R2Gn" "BCL2.R2Gn" "IRS1.R2Gn" "CCND1.R2Gn"
## [21] "PIK3R1.R2Gn" "XBP1.R2Gn" "GAPDH.R2Gn" "MYH11.R2Gn"
## [25] "COL6A1.R2Gn" "HSPA1A.R2Gn" "SYP.R2Gn" "hsa-mir-105-1"
## [29] "hsa-mir-1249" "hsa-mir-1262" "hsa-mir-1269" "hsa-mir-1271"
## [33] "hsa-mir-1305" "hsa-mir-138-1" "hsa-mir-153-1" "hsa-mir-195"
## [37] "hsa-mir-200a" "hsa-mir-200b" "hsa-mir-216b" "hsa-mir-26a-1"
## [41] "hsa-mir-301b" "hsa-mir-3130-1" "hsa-mir-3200" "hsa-mir-320c-2"
## [45] "hsa-mir-329-1" "hsa-mir-3678" "hsa-mir-3682" "hsa-mir-3690"
## [49] "hsa-mir-3926-1" "hsa-mir-429" "hsa-mir-488" "hsa-mir-497"
## [53] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"
## [57] "hsa-mir-520a" "hsa-mir-525" "hsa-mir-526b" "hsa-mir-548j"
## [61] "hsa-mir-548q" "hsa-mir-548s" "hsa-mir-550a-1" "hsa-mir-585"
## [65] "hsa-mir-7-2" "hsa-mir-7-3" "hsa-mir-767" "hsa-mir-885"
## [69] "hsa-mir-891a" "hsa-mir-9-3" "hsa-mir-940"
## [1] "bicluster17"
## [1] "G6PD.RPPA" "PEA15.RPPA" "EGFR.RPPA" "FASN.RPPA"
## [5] "TSC1.RPPA" "TTF1.RPPA" "GAPDH.RPPA" "MYH11.RPPA"
## [9] "TFRC.RPPA" "ERBB3.R2Gn" "PRKCD.R2Gn" "FN1.R2Gn"
## [13] "PEA15.R2Gn" "YWHAZ.R2Gn" "ITGA2.R2Gn" "ADAR.R2Gn"
## [17] "SERPINE1.R2Gn" "CTNNB1.R2Gn" "SHC1.R2Gn" "CCND1.R2Gn"
## [21] "PIK3R1.R2Gn" "GAPDH.R2Gn" "MYH9.R2Gn" "PXN.R2Gn"
## [25] "ANXA7.R2Gn" "hsa-mir-124-3" "hsa-mir-1255a" "hsa-mir-1258"
## [29] "hsa-mir-1262" "hsa-mir-1270-1" "hsa-mir-1292" "hsa-mir-181d"
## [33] "hsa-mir-182" "hsa-mir-184" "hsa-mir-200a" "hsa-mir-205"
## [37] "hsa-mir-2114" "hsa-mir-218-1" "hsa-mir-219-1" "hsa-mir-30c-1"
## [41] "hsa-mir-3170" "hsa-mir-3199-1" "hsa-mir-3199-2" "hsa-mir-34b"
## [45] "hsa-mir-3610" "hsa-mir-3651" "hsa-mir-3652" "hsa-mir-3926-2"
## [49] "hsa-mir-4326" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [53] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [57] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [61] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [65] "hsa-mir-636" "hsa-mir-659" "hsa-mir-670" "hsa-mir-760"
## [69] "hsa-mir-9-1" "hsa-mir-9-2" "hsa-mir-9-3"
## [1] "bicluster3"
## [1] "ASNS.RPPA" "PTEN.RPPA" "FASN.RPPA" "ACVRL1.RPPA"
## [5] "PDCD4.RPPA" "MSH6.RPPA" "ERCC1.RPPA" "MSH2.RPPA"
## [9] "ERBB3.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn" "CDH2.R2Gn"
## [13] "BECN1.R2Gn" "MAPK1.R2Gn" "ADAR.R2Gn" "SERPINE1.R2Gn"
## [17] "PIK3R1.R2Gn" "NRG1.R2Gn" "MYH9.R2Gn" "HSPA1A.R2Gn"
## [21] "SYP.R2Gn" "PARP1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1224"
## [25] "hsa-mir-124-3" "hsa-mir-1248" "hsa-mir-1270-1" "hsa-mir-1271"
## [29] "hsa-mir-129-2" "hsa-mir-1292" "hsa-mir-1304" "hsa-mir-182"
## [33] "hsa-mir-183" "hsa-mir-205" "hsa-mir-206" "hsa-mir-2114"
## [37] "hsa-mir-26a-1" "hsa-mir-296" "hsa-mir-3144" "hsa-mir-3166"
## [41] "hsa-mir-3191" "hsa-mir-320c-2" "hsa-mir-3676" "hsa-mir-3678"
## [45] "hsa-mir-3682" "hsa-mir-3940" "hsa-mir-429" "hsa-mir-451"
## [49] "hsa-mir-499" "hsa-mir-504" "hsa-mir-511-2" "hsa-mir-516a-1"
## [53] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [57] "hsa-mir-518f" "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"
## [61] "hsa-mir-525" "hsa-mir-526b" "hsa-mir-552" "hsa-mir-570"
## [65] "hsa-mir-580" "hsa-mir-624" "hsa-mir-663" "hsa-mir-7-2"
## [69] "hsa-mir-760" "hsa-mir-765" "hsa-mir-96"
## [1] "bicluster35"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "GATA3.RPPA" "PEA15.RPPA"
## [5] "INPP4B.RPPA" "TSC1.RPPA" "PDCD4.RPPA" "VHL.RPPA"
## [9] "AR.RPPA" "GAPDH.RPPA" "ERCC1.RPPA" "TFRC.RPPA"
## [13] "CDKN1B.R2Gn" "PRKCD.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn"
## [17] "CDH2.R2Gn" "EEF2.R2Gn" "YWHAE.R2Gn" "PRKCA.R2Gn"
## [21] "PRRT2.R2Gn" "CAV1.R2Gn" "GAPDH.R2Gn" "COL6A1.R2Gn"
## [25] "HSPA1A.R2Gn" "hsa-mir-105-1" "hsa-mir-1224" "hsa-mir-1248"
## [29] "hsa-mir-1255a" "hsa-mir-1271" "hsa-mir-192" "hsa-mir-196a-2"
## [33] "hsa-mir-200b" "hsa-mir-204" "hsa-mir-216a" "hsa-mir-217"
## [37] "hsa-mir-218-1" "hsa-mir-296" "hsa-mir-301b" "hsa-mir-3144"
## [41] "hsa-mir-3191" "hsa-mir-3199-1" "hsa-mir-3200" "hsa-mir-320c-1"
## [45] "hsa-mir-320c-2" "hsa-mir-346" "hsa-mir-3926-2" "hsa-mir-3928"
## [49] "hsa-mir-3940" "hsa-mir-450a-1" "hsa-mir-450a-2" "hsa-mir-455"
## [53] "hsa-mir-488" "hsa-mir-511-1" "hsa-mir-511-2" "hsa-mir-516b-1"
## [57] "hsa-mir-517a" "hsa-mir-518c" "hsa-mir-526b" "hsa-mir-545"
## [61] "hsa-mir-548q" "hsa-mir-548v" "hsa-mir-550a-2" "hsa-mir-552"
## [65] "hsa-mir-615" "hsa-mir-7-2" "hsa-mir-7-3" "hsa-mir-760"
## [69] "hsa-mir-891a" "hsa-mir-937" "hsa-mir-98"
## [1] "bicluster39"
## [1] "RBM15.RPPA" "VHL.RPPA" "XBP1.RPPA" "GAPDH.RPPA"
## [5] "MSH6.RPPA" "TFRC.RPPA" "MAPK14.R2Gn" "CDH2.R2Gn"
## [9] "NEK7.R2Gn" "EEF2.R2Gn" "YWHAE.R2Gn" "PDCD4.R2Gn"
## [13] "PARK7.R2Gn" "PIK3R1.R2Gn" "PRDX1.R2Gn" "TYMS.R2Gn"
## [17] "MYH9.R2Gn" "FOXM1.R2Gn" "STAT5A.R2Gn" "NDRG1.R2Gn"
## [21] "YWHAB.R2Gn" "TFRC.R2Gn" "ERRFI1.R2Gn" "PARP1.R2Gn"
## [25] "SQSTM1.R2Gn" "hsa-let-7c" "hsa-mir-105-1" "hsa-mir-105-2"
## [29] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1247" "hsa-mir-1248"
## [33] "hsa-mir-1251" "hsa-mir-1255a" "hsa-mir-125b-1" "hsa-mir-125b-2"
## [37] "hsa-mir-1269" "hsa-mir-1274b" "hsa-mir-129-2" "hsa-mir-133b"
## [41] "hsa-mir-135a-1" "hsa-mir-141" "hsa-mir-182" "hsa-mir-183"
## [45] "hsa-mir-184" "hsa-mir-218-1" "hsa-mir-296" "hsa-mir-301b"
## [49] "hsa-mir-3144" "hsa-mir-3199-2" "hsa-mir-329-1" "hsa-mir-3619"
## [53] "hsa-mir-3687" "hsa-mir-3917" "hsa-mir-3923" "hsa-mir-3928"
## [57] "hsa-mir-411" "hsa-mir-570" "hsa-mir-577" "hsa-mir-579"
## [61] "hsa-mir-607" "hsa-mir-627" "hsa-mir-643" "hsa-mir-675"
## [65] "hsa-mir-7-3" "hsa-mir-767" "hsa-mir-873" "hsa-mir-876"
## [69] "hsa-mir-939" "hsa-mir-940" "hsa-mir-99a"
## [1] "bicluster26"
## [1] "PTEN.RPPA" "ATM.RPPA" "EGFR.RPPA" "PDCD4.RPPA"
## [5] "AR.RPPA" "TFRC.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [9] "FN1.R2Gn" "CDH2.R2Gn" "VASP.R2Gn" "ITGA2.R2Gn"
## [13] "BAP1.R2Gn" "EEF2.R2Gn" "SERPINE1.R2Gn" "CTNNB1.R2Gn"
## [17] "JUN.R2Gn" "PIK3R1.R2Gn" "NDRG1.R2Gn" "TFRC.R2Gn"
## [21] "ERRFI1.R2Gn" "SQSTM1.R2Gn" "hsa-mir-105-2" "hsa-mir-124-1"
## [25] "hsa-mir-1249" "hsa-mir-1270-2" "hsa-mir-1274b" "hsa-mir-1292"
## [29] "hsa-mir-141" "hsa-mir-190b" "hsa-mir-200a" "hsa-mir-216b"
## [33] "hsa-mir-217" "hsa-mir-224" "hsa-mir-296" "hsa-mir-3130-1"
## [37] "hsa-mir-3144" "hsa-mir-3173" "hsa-mir-3193" "hsa-mir-3199-1"
## [41] "hsa-mir-320c-2" "hsa-mir-326" "hsa-mir-34b" "hsa-mir-3620"
## [45] "hsa-mir-3652" "hsa-mir-3662" "hsa-mir-3917" "hsa-mir-3923"
## [49] "hsa-mir-452" "hsa-mir-488" "hsa-mir-499" "hsa-mir-516a-1"
## [53] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-518b" "hsa-mir-520a"
## [57] "hsa-mir-525" "hsa-mir-548j" "hsa-mir-548q" "hsa-mir-561"
## [61] "hsa-mir-577" "hsa-mir-580" "hsa-mir-627" "hsa-mir-643"
## [65] "hsa-mir-656" "hsa-mir-663" "hsa-mir-675" "hsa-mir-7-2"
## [69] "hsa-mir-7-3" "hsa-mir-767" "hsa-mir-873"
## [1] "bicluster40"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "EGFR.RPPA" "FASN.RPPA"
## [5] "ACVRL1.RPPA" "AR.RPPA" "PRDX1.RPPA" "MSH6.RPPA"
## [9] "MYH11.RPPA" "MSH2.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn"
## [13] "CDH2.R2Gn" "EEF2.R2Gn" "RPS6.R2Gn" "TGM2.R2Gn"
## [17] "MYH11.R2Gn" "HSPA1A.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1-2"
## [21] "hsa-mir-1185-1" "hsa-mir-122" "hsa-mir-1228" "hsa-mir-124-3"
## [25] "hsa-mir-1249" "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-129-1"
## [29] "hsa-mir-129-2" "hsa-mir-146a" "hsa-mir-191" "hsa-mir-200a"
## [33] "hsa-mir-205" "hsa-mir-214" "hsa-mir-218-1" "hsa-mir-224"
## [37] "hsa-mir-3065" "hsa-mir-3166" "hsa-mir-3170" "hsa-mir-3190"
## [41] "hsa-mir-3199-1" "hsa-mir-329-1" "hsa-mir-346" "hsa-mir-3610"
## [45] "hsa-mir-3648" "hsa-mir-411" "hsa-mir-429" "hsa-mir-452"
## [49] "hsa-mir-466" "hsa-mir-489" "hsa-mir-490" "hsa-mir-516a-1"
## [53] "hsa-mir-517a" "hsa-mir-525" "hsa-mir-526b" "hsa-mir-548b"
## [57] "hsa-mir-550a-2" "hsa-mir-551b" "hsa-mir-552" "hsa-mir-639"
## [61] "hsa-mir-656" "hsa-mir-659" "hsa-mir-665" "hsa-mir-675"
## [65] "hsa-mir-7-2" "hsa-mir-760" "hsa-mir-767" "hsa-mir-873"
## [69] "hsa-mir-876" "hsa-mir-885" "hsa-mir-937"
## [1] "bicluster18"
## [1] "GATA3.RPPA" "PEA15.RPPA" "MSH6.RPPA" "MYH11.RPPA"
## [5] "PDK1.RPPA" "MSH2.RPPA" "PREX1.RPPA" "DIRAS3.R2Gn"
## [9] "YAP1.R2Gn" "ERBB3.R2Gn" "CDH2.R2Gn" "GATA3.R2Gn"
## [13] "PEA15.R2Gn" "EIF4G1.R2Gn" "VASP.R2Gn" "ITGA2.R2Gn"
## [17] "ADAR.R2Gn" "EEF2.R2Gn" "CTNNB1.R2Gn" "RPS6.R2Gn"
## [21] "TGM2.R2Gn" "IRS1.R2Gn" "GAPDH.R2Gn" "KRT5.R2Gn"
## [25] "NDRG1.R2Gn" "BID.R2Gn" "TFRC.R2Gn" "SYP.R2Gn"
## [29] "PARP1.R2Gn" "TFF1.R2Gn" "hsa-let-7e" "hsa-let-7f-2"
## [33] "hsa-mir-103-2" "hsa-mir-124-3" "hsa-mir-1254" "hsa-mir-1255a"
## [37] "hsa-mir-1269" "hsa-mir-1270-2" "hsa-mir-128-1" "hsa-mir-1304"
## [41] "hsa-mir-135b" "hsa-mir-196b" "hsa-mir-203" "hsa-mir-205"
## [45] "hsa-mir-224" "hsa-mir-3130-1" "hsa-mir-3144" "hsa-mir-3170"
## [49] "hsa-mir-320c-2" "hsa-mir-3652" "hsa-mir-3678" "hsa-mir-383"
## [53] "hsa-mir-3922" "hsa-mir-3926-2" "hsa-mir-452" "hsa-mir-507"
## [57] "hsa-mir-510" "hsa-mir-516a-1" "hsa-mir-518b" "hsa-mir-544"
## [61] "hsa-mir-548b" "hsa-mir-548q" "hsa-mir-561" "hsa-mir-585"
## [65] "hsa-mir-639" "hsa-mir-656" "hsa-mir-670" "hsa-mir-7-2"
## [69] "hsa-mir-765" "hsa-mir-876" "hsa-mir-940"
## [1] "bicluster6"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "RBM15.RPPA" "GATA3.RPPA"
## [5] "EGFR.RPPA" "FASN.RPPA" "TTF1.RPPA" "AR.RPPA"
## [9] "PRDX1.RPPA" "MSH6.RPPA" "KDR.R2Gn" "IGFBP2.R2Gn"
## [13] "CDH2.R2Gn" "RB1.R2Gn" "EIF4G1.R2Gn" "YWHAZ.R2Gn"
## [17] "RAB11A.R2Gn" "KIT.R2Gn" "TUBA1B.R2Gn" "NDRG1.R2Gn"
## [21] "HSPA1A.R2Gn" "ERRFI1.R2Gn" "IDH3A.R2Gn" "hsa-mir-1228"
## [25] "hsa-mir-1245" "hsa-mir-1247" "hsa-mir-1248" "hsa-mir-1269"
## [29] "hsa-mir-1270-1" "hsa-mir-1271" "hsa-mir-1292" "hsa-mir-135a-1"
## [33] "hsa-mir-135b" "hsa-mir-138-1" "hsa-mir-138-2" "hsa-mir-1909"
## [37] "hsa-mir-200b" "hsa-mir-210" "hsa-mir-216a" "hsa-mir-217"
## [41] "hsa-mir-218-1" "hsa-mir-26a-1" "hsa-mir-296" "hsa-mir-30c-1"
## [45] "hsa-mir-3144" "hsa-mir-3199-1" "hsa-mir-320c-1" "hsa-mir-34b"
## [49] "hsa-mir-3614" "hsa-mir-3619" "hsa-mir-3620" "hsa-mir-3648"
## [53] "hsa-mir-372" "hsa-mir-3912" "hsa-mir-3926-2" "hsa-mir-3934"
## [57] "hsa-mir-3940" "hsa-mir-466" "hsa-mir-548v" "hsa-mir-550a-2"
## [61] "hsa-mir-551b" "hsa-mir-585" "hsa-mir-592" "hsa-mir-605"
## [65] "hsa-mir-627" "hsa-mir-636" "hsa-mir-642a" "hsa-mir-765"
## [69] "hsa-mir-873" "hsa-mir-876" "hsa-mir-939"
## [1] "bicluster30"
## [1] "EGFR.RPPA" "INPP4B.RPPA" "ACVRL1.RPPA" "PRDX1.RPPA"
## [5] "TFRC.RPPA" "RPS6KA1.R2Gn" "SRC.R2Gn" "BAP1.R2Gn"
## [9] "ADAR.R2Gn" "PCNA.R2Gn" "CTNNB1.R2Gn" "RPS6.R2Gn"
## [13] "SHC1.R2Gn" "STMN1.R2Gn" "CCND1.R2Gn" "SYP.R2Gn"
## [17] "RBM3.R2Gn" "SYK.R2Gn" "RET.R2Gn" "SQSTM1.R2Gn"
## [21] "hsa-mir-105-2" "hsa-mir-124-1" "hsa-mir-1249" "hsa-mir-1251"
## [25] "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1274b" "hsa-mir-1292"
## [29] "hsa-mir-133b" "hsa-mir-137" "hsa-mir-138-1" "hsa-mir-153-1"
## [33] "hsa-mir-153-2" "hsa-mir-206" "hsa-mir-2114" "hsa-mir-30a"
## [37] "hsa-mir-3144" "hsa-mir-3173" "hsa-mir-3199-1" "hsa-mir-320c-2"
## [41] "hsa-mir-3610" "hsa-mir-3614" "hsa-mir-3655" "hsa-mir-3662"
## [45] "hsa-mir-3676" "hsa-mir-3678" "hsa-mir-3682" "hsa-mir-3917"
## [49] "hsa-mir-3934" "hsa-mir-455" "hsa-mir-491" "hsa-mir-499"
## [53] "hsa-mir-507" "hsa-mir-519a-2" "hsa-mir-548s" "hsa-mir-551b"
## [57] "hsa-mir-552" "hsa-mir-561" "hsa-mir-570" "hsa-mir-577"
## [61] "hsa-mir-618" "hsa-mir-624" "hsa-mir-639" "hsa-mir-643"
## [65] "hsa-mir-7-2" "hsa-mir-7-3" "hsa-mir-760" "hsa-mir-765"
## [69] "hsa-mir-767" "hsa-mir-939" "hsa-mir-940"
## [1] "bicluster8"
## [1] "G6PD.RPPA" "ASNS.RPPA" "PTEN.RPPA" "PEA15.RPPA"
## [5] "ATM.RPPA" "PRDX1.RPPA" "MYH11.RPPA" "TFRC.RPPA"
## [9] "KDR.R2Gn" "ERBB3.R2Gn" "FN1.R2Gn" "AKT2.R2Gn"
## [13] "CDH2.R2Gn" "EEF2.R2Gn" "SERPINE1.R2Gn" "ACVRL1.R2Gn"
## [17] "GSK3A.R2Gn" "TGM2.R2Gn" "KEAP1.R2Gn" "GAPDH.R2Gn"
## [21] "TUBA1B.R2Gn" "PDK1.R2Gn" "hsa-mir-100" "hsa-mir-1179"
## [25] "hsa-mir-122" "hsa-mir-1255a" "hsa-mir-1270-1" "hsa-mir-1270-2"
## [29] "hsa-mir-129-1" "hsa-mir-137" "hsa-mir-138-2" "hsa-mir-141"
## [33] "hsa-mir-146b" "hsa-mir-149" "hsa-mir-153-1" "hsa-mir-196a-2"
## [37] "hsa-mir-210" "hsa-mir-216a" "hsa-mir-296" "hsa-mir-30c-1"
## [41] "hsa-mir-3170" "hsa-mir-3191" "hsa-mir-320c-1" "hsa-mir-329-2"
## [45] "hsa-mir-346" "hsa-mir-34b" "hsa-mir-3610" "hsa-mir-3652"
## [49] "hsa-mir-3678" "hsa-mir-3682" "hsa-mir-3687" "hsa-mir-3909"
## [53] "hsa-mir-3934" "hsa-mir-3940" "hsa-mir-451" "hsa-mir-486"
## [57] "hsa-mir-511-2" "hsa-mir-518b" "hsa-mir-519a-2" "hsa-mir-520a"
## [61] "hsa-mir-548s" "hsa-mir-552" "hsa-mir-577" "hsa-mir-592"
## [65] "hsa-mir-627" "hsa-mir-639" "hsa-mir-656" "hsa-mir-675"
## [69] "hsa-mir-765" "hsa-mir-876" "hsa-mir-939"
## [1] "bicluster11"
## [1] "G6PD.RPPA" "ASNS.RPPA" "PEA15.RPPA" "ACVRL1.RPPA"
## [5] "VHL.RPPA" "AR.RPPA" "MSH6.RPPA" "MYH11.RPPA"
## [9] "PDK1.RPPA" "MSH2.RPPA" "G6PD.R2Gn" "ERBB3.R2Gn"
## [13] "EIF4EBP1.R2Gn" "FN1.R2Gn" "CDKN1A.R2Gn" "EEF2.R2Gn"
## [17] "YWHAE.R2Gn" "RPS6.R2Gn" "TGM2.R2Gn" "GAPDH.R2Gn"
## [21] "COL6A1.R2Gn" "SYP.R2Gn" "CHGA.R2Gn" "hsa-mir-1269"
## [25] "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-129-2" "hsa-mir-1293"
## [29] "hsa-mir-135b" "hsa-mir-1909" "hsa-mir-206" "hsa-mir-216b"
## [33] "hsa-mir-26a-1" "hsa-mir-296" "hsa-mir-3187" "hsa-mir-3199-2"
## [37] "hsa-mir-320c-1" "hsa-mir-329-1" "hsa-mir-345" "hsa-mir-3610"
## [41] "hsa-mir-3655" "hsa-mir-3676" "hsa-mir-3677" "hsa-mir-372"
## [45] "hsa-mir-377" "hsa-mir-380" "hsa-mir-411" "hsa-mir-429"
## [49] "hsa-mir-4326" "hsa-mir-485" "hsa-mir-494" "hsa-mir-506"
## [53] "hsa-mir-507" "hsa-mir-510" "hsa-mir-513a-2" "hsa-mir-516a-1"
## [57] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-518b" "hsa-mir-518f"
## [61] "hsa-mir-525" "hsa-mir-543" "hsa-mir-548v" "hsa-mir-570"
## [65] "hsa-mir-580" "hsa-mir-592" "hsa-mir-605" "hsa-mir-639"
## [69] "hsa-mir-655" "hsa-mir-765" "hsa-mir-940"
## [1] "bicluster15"
## [1] "G6PD.RPPA" "RBM15.RPPA" "PEA15.RPPA" "BRCA2.RPPA"
## [5] "FASN.RPPA" "PCNA.RPPA" "PDCD4.RPPA" "TTF1.RPPA"
## [9] "VHL.RPPA" "PRDX1.RPPA" "XBP1.RPPA" "IGFBP2.R2Gn"
## [13] "FN1.R2Gn" "SRC.R2Gn" "MET.R2Gn" "SMAD4.R2Gn"
## [17] "PRKCA.R2Gn" "COL6A1.R2Gn" "NDRG1.R2Gn" "ANXA1.R2Gn"
## [21] "ERRFI1.R2Gn" "SYP.R2Gn" "SQSTM1.R2Gn" "hsa-mir-105-1"
## [25] "hsa-mir-124-3" "hsa-mir-1245" "hsa-mir-1258" "hsa-mir-1270-1"
## [29] "hsa-mir-1270-2" "hsa-mir-1274b" "hsa-mir-130a" "hsa-mir-135a-1"
## [33] "hsa-mir-153-1" "hsa-mir-184" "hsa-mir-206" "hsa-mir-2114"
## [37] "hsa-mir-218-1" "hsa-mir-301b" "hsa-mir-30c-1" "hsa-mir-3130-1"
## [41] "hsa-mir-3144" "hsa-mir-3173" "hsa-mir-320c-1" "hsa-mir-346"
## [45] "hsa-mir-34b" "hsa-mir-34c" "hsa-mir-3662" "hsa-mir-3922"
## [49] "hsa-mir-455" "hsa-mir-483" "hsa-mir-507" "hsa-mir-513a-1"
## [53] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"
## [57] "hsa-mir-518b" "hsa-mir-519a-2" "hsa-mir-548b" "hsa-mir-551b"
## [61] "hsa-mir-552" "hsa-mir-561" "hsa-mir-570" "hsa-mir-581"
## [65] "hsa-mir-585" "hsa-mir-670" "hsa-mir-7-2" "hsa-mir-765"
## [69] "hsa-mir-873" "hsa-mir-876" "hsa-mir-935"
## [1] "bicluster32"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "RBM15.RPPA" "FASN.RPPA"
## [5] "MSH6.RPPA" "TFRC.RPPA" "DIRAS3.R2Gn" "ERBB3.R2Gn"
## [9] "IGFBP2.R2Gn" "FN1.R2Gn" "AKT3.R2Gn" "CDKN1A.R2Gn"
## [13] "ADAR.R2Gn" "EEF2.R2Gn" "SERPINE1.R2Gn" "CTNNB1.R2Gn"
## [17] "LCN2.R2Gn" "RPS6.R2Gn" "JUN.R2Gn" "NRG1.R2Gn"
## [21] "PRKAA1.R2Gn" "TFRC.R2Gn" "HSPA1A.R2Gn" "SNAI2.R2Gn"
## [25] "CDKN2A.R2Gn" "IDH3A.R2Gn" "hsa-mir-105-1" "hsa-mir-105-2"
## [29] "hsa-mir-1185-2" "hsa-mir-1226" "hsa-mir-124-2" "hsa-mir-1249"
## [33] "hsa-mir-1269" "hsa-mir-129-2" "hsa-mir-133b" "hsa-mir-138-1"
## [37] "hsa-mir-141" "hsa-mir-144" "hsa-mir-149" "hsa-mir-191"
## [41] "hsa-mir-206" "hsa-mir-2114" "hsa-mir-3127" "hsa-mir-3170"
## [45] "hsa-mir-3173" "hsa-mir-3199-2" "hsa-mir-3926-2" "hsa-mir-451"
## [49] "hsa-mir-499" "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a"
## [53] "hsa-mir-518c" "hsa-mir-518f" "hsa-mir-519a-1" "hsa-mir-519a-2"
## [57] "hsa-mir-520a" "hsa-mir-525" "hsa-mir-526b" "hsa-mir-548j"
## [61] "hsa-mir-561" "hsa-mir-570" "hsa-mir-580" "hsa-mir-605"
## [65] "hsa-mir-616" "hsa-mir-663" "hsa-mir-7-2" "hsa-mir-7-3"
## [69] "hsa-mir-708" "hsa-mir-760" "hsa-mir-935"
## [1] "bicluster33"
## [1] "RBM15.RPPA" "ATM.RPPA" "EGFR.RPPA" "PDCD4.RPPA"
## [5] "TFRC.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn" "AKT1.R2Gn"
## [9] "FASN.R2Gn" "SERPINE1.R2Gn" "YWHAE.R2Gn" "CTNNB1.R2Gn"
## [13] "FOXO3.R2Gn" "GAPDH.R2Gn" "COL6A1.R2Gn" "HSPA1A.R2Gn"
## [17] "hsa-mir-1185-2" "hsa-mir-1228" "hsa-mir-1247" "hsa-mir-1249"
## [21] "hsa-mir-1255a" "hsa-mir-129-2" "hsa-mir-1293" "hsa-mir-133b"
## [25] "hsa-mir-137" "hsa-mir-138-1" "hsa-mir-138-2" "hsa-mir-148a"
## [29] "hsa-mir-187" "hsa-mir-1909" "hsa-mir-196a-1" "hsa-mir-196a-2"
## [33] "hsa-mir-200a" "hsa-mir-202" "hsa-mir-2114" "hsa-mir-216b"
## [37] "hsa-mir-301b" "hsa-mir-3144" "hsa-mir-3173" "hsa-mir-3191"
## [41] "hsa-mir-3193" "hsa-mir-32" "hsa-mir-329-1" "hsa-mir-329-2"
## [45] "hsa-mir-346" "hsa-mir-3678" "hsa-mir-383" "hsa-mir-490"
## [49] "hsa-mir-499" "hsa-mir-504" "hsa-mir-510" "hsa-mir-516a-1"
## [53] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [57] "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a" "hsa-mir-526b"
## [61] "hsa-mir-585" "hsa-mir-605" "hsa-mir-615" "hsa-mir-642a"
## [65] "hsa-mir-670" "hsa-mir-765" "hsa-mir-767" "hsa-mir-876"
## [69] "hsa-mir-891a" "hsa-mir-939" "hsa-mir-940"
## [1] "bicluster24"
## [1] "PEA15.RPPA" "EGFR.RPPA" "TTF1.RPPA" "VHL.RPPA"
## [5] "XBP1.RPPA" "MSH6.RPPA" "NF2.RPPA" "PDK1.RPPA"
## [9] "ERCC1.RPPA" "TFRC.RPPA" "EIF4G1.R2Gn" "BAP1.R2Gn"
## [13] "SERPINE1.R2Gn" "CTNNB1.R2Gn" "RPS6.R2Gn" "PRKCA.R2Gn"
## [17] "CTNNA1.R2Gn" "PIK3R1.R2Gn" "FOXM1.R2Gn" "NDRG1.R2Gn"
## [21] "PIK3R2.R2Gn" "HSPA1A.R2Gn" "PARP1.R2Gn" "RET.R2Gn"
## [25] "CHGA.R2Gn" "hsa-mir-1197" "hsa-mir-124-3" "hsa-mir-1258"
## [29] "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-1291" "hsa-mir-1304"
## [33] "hsa-mir-1305" "hsa-mir-138-2" "hsa-mir-187" "hsa-mir-200a"
## [37] "hsa-mir-200b" "hsa-mir-205" "hsa-mir-26a-1" "hsa-mir-329-2"
## [41] "hsa-mir-346" "hsa-mir-3607" "hsa-mir-3610" "hsa-mir-3687"
## [45] "hsa-mir-3909" "hsa-mir-3926-1" "hsa-mir-429" "hsa-mir-490"
## [49] "hsa-mir-495" "hsa-mir-496" "hsa-mir-507" "hsa-mir-510"
## [53] "hsa-mir-511-1" "hsa-mir-513a-2" "hsa-mir-516a-1" "hsa-mir-516a-2"
## [57] "hsa-mir-516b-1" "hsa-mir-518b" "hsa-mir-548q" "hsa-mir-548v"
## [61] "hsa-mir-552" "hsa-mir-570" "hsa-mir-577" "hsa-mir-579"
## [65] "hsa-mir-605" "hsa-mir-636" "hsa-mir-653" "hsa-mir-656"
## [69] "hsa-mir-770" "hsa-mir-937" "hsa-mir-939"top_10_perc_result = list("1bc" = f1_10,
"2bc" = f2_10,
"3bc" = f3_10,
"5bc" = f5_10,
"10bc" = f10_10,
"15bc" = f15_10,
"20bc" = f20_10,
"35bc" = f35_10,
"43bc" = f43_10)
saveRDS(top_10_perc_result, file = "data/sel_features/results_fabia_top_10_percent.rds")Top 25%
f1_25 = top_x_percent(fabia_1, perct = 25, print = F)
f2_25 = top_x_percent(fabia_2, perct = 25, print = F)
f3_25 = top_x_percent(fabia_3, perct = 25, print = F)
f5_25 = top_x_percent(fabia_5, perct = 25, print = F)
f10_25 = top_x_percent(fabia_10, perct = 25, print = F)
f15_25 = top_x_percent(fabia_15, perct = 25, print = F)
f20_25 = top_x_percent(fabia_20, perct = 25, print = F)
f35_25 = top_x_percent(fabia_35, perct = 25, print = F)
f43_25 = top_x_percent(fabia_43, perct = 25, print = F)top_25_perc_result = list("1bc" = f1_25,
"2bc" = f2_25,
"3bc" = f3_25,
"5bc" = f5_25,
"10bc" = f10_25,
"15bc" = f15_25,
"20bc" = f20_25,
"35bc" = f35_25,
"43bc" = f43_25)
saveRDS(top_25_perc_result, file = "data/sel_features/results_fabia_top_25_percent.rds")C. Visualization of top x%
Check max and min value of loadings in order to create symmetrical plots:
max_fL = max(max(fabia_1@L),
max(fabia_2@L),
max(fabia_3@L),
max(fabia_5@L),
max(fabia_10@L),
max(fabia_15@L),
max(fabia_20@L),
max(fabia_35@L),
max(fabia_43@L)
)
min_fL = min(min(fabia_1@L),
min(fabia_2@L),
min(fabia_3@L),
min(fabia_5@L),
min(fabia_10@L),
min(fabia_15@L),
min(fabia_20@L),
min(fabia_35@L),
min(fabia_43@L)
)
c(max_fL, min_fL)## [1] 2.059862 -1.661929The limits of y axis will be (-2.1, 2.1) in order to make them symmetrical.
plot.fabia.topx = function(fabia_result, fabia_top5, fabia_top10, fabia_top25, bc, abs.ymax = 2.1) {
total_bc = fabia_result@p1
if (bc > total_bc) {
stop("Requested bicluster number exceeds the total available biclusters.")
}
FABIA.L = as.data.frame(fabia_result@L)
FABIA.L$var = rownames(FABIA.L)
biclusterx = paste("bicluster", bc, sep = "")
FABIA.L$top5 = FABIA.L$var %in% names(fabia_top5[[biclusterx]])
FABIA.L$top10 = FABIA.L$var %in% names(fabia_top10[[biclusterx]])
FABIA.L$top25 = FABIA.L$var %in% names(fabia_top25[[biclusterx]])
FABIA.L$top = NA
for(i in 1:nrow(FABIA.L)) {
if (FABIA.L[i,]$top25 == F) {
FABIA.L[i,]$top = NA
} else if (FABIA.L[i,]$top10 == F) {
FABIA.L[i,]$top = "Top 11% ~ 25%"
} else if (FABIA.L[i,]$top5 == F){
FABIA.L[i,]$top = "Top 06% ~ 10%"
} else {
FABIA.L[i,]$top = "Top 05%"
}
}
FABIA.L$dataset = sapply(FABIA.L$var, retrieve.dataset.type)
#FABIA.L
ggplot(data = FABIA.L, aes_string(x= "var", y = biclusterx, color = "top", shape="dataset")) +
geom_point() +
#geom_text(nudge_y = .04, alpha = 1, size = 3) +
theme(
axis.title.x = element_blank(),
axis.text.x = element_blank(),
axis.ticks.x = element_blank()
) +
ggtitle(paste(total_bc , "Biclusters")) +
xlab(biclusterx) +
ylim(-abs.ymax, abs.ymax)
#if (perc5line) {
# perc5 = min(FABIA.L[FABIA.L$top5 == T, biclusterx])
# p = p + geom_hline(yintercept = perc5)
#}
#p
}
retrieve.dataset.type = function(var.name) {
if (startsWith(var.name, "hsa")) {
out = "miRNASeqGene"
} else if (endsWith(var.name, "RPPA")) {
out = "RPPAArray"
} else if (endsWith(var.name, "R2Gn")) {
out = "RNASeq2GeneNorm"
} else {
out = NA
}
out
}1 Bicluster
plot.fabia.topx(fabia_1, f1_5, f1_10, f1_25, 1, abs.ymax = 1)## Warning: `aes_string()` was deprecated in ggplot2 3.0.0.
## ℹ Please use tidy evaluation idioms with `aes()`.
## ℹ See also `vignette("ggplot2-in-packages")` for more information.
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_lifecycle_warnings()` to see where this warning was
## generated.
2 Biclusters
plot.fabia.topx(fabia_2, f2_5, f2_10, f2_25, 1, abs.ymax = 1)
plot.fabia.topx(fabia_2, f2_5, f2_10, f2_25, 2, abs.ymax = 1)
3 Biclusters
plot.fabia.topx(fabia_3, f3_5, f3_10, f3_25, 1, abs.ymax = 1.5)
plot.fabia.topx(fabia_3, f3_5, f3_10, f3_25, 2, abs.ymax = 1.5)
plot.fabia.topx(fabia_3, f3_5, f3_10, f3_25, 3, abs.ymax = 1.5)
5 Biclusters
plot.fabia.topx(fabia_5, f5_5, f5_10, f5_25, 1, abs.ymax = 2)
plot.fabia.topx(fabia_5, f5_5, f5_10, f5_25, 2, abs.ymax = 2)
plot.fabia.topx(fabia_5, f5_5, f5_10, f5_25, 3, abs.ymax = 2)
plot.fabia.topx(fabia_5, f5_5, f5_10, f5_25, 4, abs.ymax = 2)
plot.fabia.topx(fabia_5, f5_5, f5_10, f5_25, 5, abs.ymax = 2)
10 Biclusters
plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 1)
plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 2)
plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 3)
plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 4)
plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 5)
plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 6)
plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 7)
plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 8)
plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 9)
plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 10)
D Hard membership by extractBic()
select.by.Bic = function(fabia.result, perct = 5, print = T, show.loading = F) {
fabia_L = fabia.result@L
out.list = vector("list", length = ncol(fabia_L))
names(out.list) = colnames(fabia_L)
for (i in 1:ncol(fabia_L)) { # Number of biclusters
L_curr = fabia_L[,i]
# Biclusters name start with bic entry 2l+1 to 3L
sel = which(names(L_curr) %in% extractBic(fabia.result)$bic[2 * ncol(fabia_L) + i][[1]])
out.list[[i]] = L_curr[sel]
if(print) {
print(colnames(fabia_L)[i])
if (show.loading) {
print(L_curr[sel])
} else {
print(names(L_curr[sel]))
}
}
}
out.list
}
#boxplot(fabia_1@L)f1_bic = select.by.Bic(fabia_1)## [1] "bicluster1"
## [1] "G6PD.RPPA" "TGM2.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [5] "hsa-mir-1197" "hsa-mir-127" "hsa-mir-134" "hsa-mir-136"
## [9] "hsa-mir-154" "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b"
## [13] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369"
## [17] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"
## [21] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379" "hsa-mir-380"
## [25] "hsa-mir-381" "hsa-mir-382" "hsa-mir-409" "hsa-mir-410"
## [29] "hsa-mir-411" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [33] "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b"
## [37] "hsa-mir-493" "hsa-mir-494" "hsa-mir-495" "hsa-mir-496"
## [41] "hsa-mir-517a" "hsa-mir-539" "hsa-mir-541" "hsa-mir-543"
## [45] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [49] "hsa-mir-668" "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"f2_bic = select.by.Bic(fabia_2)## [1] "bicluster2"
## [1] "G6PD.RPPA" "RBM15.RPPA" "FASN.RPPA" "TTF1.RPPA"
## [5] "VHL.RPPA" "TGM2.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1"
## [9] "hsa-mir-1185-2" "hsa-mir-1193" "hsa-mir-1197" "hsa-mir-1258"
## [13] "hsa-mir-127" "hsa-mir-134" "hsa-mir-136" "hsa-mir-154"
## [17] "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [21] "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369" "hsa-mir-370"
## [25] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c"
## [29] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-381"
## [33] "hsa-mir-382" "hsa-mir-409" "hsa-mir-410" "hsa-mir-411"
## [37] "hsa-mir-412" "hsa-mir-431" "hsa-mir-432" "hsa-mir-433"
## [41] "hsa-mir-466" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b"
## [45] "hsa-mir-493" "hsa-mir-494" "hsa-mir-495" "hsa-mir-496"
## [49] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [53] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [57] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [61] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-517a"
## [65] "hsa-mir-539" "hsa-mir-541" "hsa-mir-543" "hsa-mir-605"
## [69] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [73] "hsa-mir-668" "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster1"
## [1] "FN1.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn" "hsa-mir-1185-1"
## [5] "hsa-mir-1185-2" "hsa-mir-135b" "hsa-mir-206" "hsa-mir-3166"
## [9] "hsa-mir-3199-1" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-376a-2"
## [13] "hsa-mir-380" "hsa-mir-3923" "hsa-mir-411" "hsa-mir-433"
## [17] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494" "hsa-mir-506"
## [21] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [25] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [29] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [33] "hsa-mir-543" "hsa-mir-655" "hsa-mir-656" "hsa-mir-668"f3_bic = select.by.Bic(fabia_3)## [1] "bicluster2"
## [1] "G6PD.RPPA" "FASN.RPPA" "TGM2.R2Gn" "hsa-mir-1185-1"
## [5] "hsa-mir-1197" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-376a-2"
## [9] "hsa-mir-380" "hsa-mir-466" "hsa-mir-487a" "hsa-mir-506"
## [13] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-3" "hsa-mir-510"
## [17] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [21] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-541"
## [25] "hsa-mir-605" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [29] "hsa-mir-668" "hsa-mir-770"
## [1] "bicluster3"
## [1] "GATA3.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn" "CTNNB1.R2Gn"
## [5] "CCND1.R2Gn" "hsa-mir-1185-1" "hsa-mir-124-3" "hsa-mir-135b"
## [9] "hsa-mir-206" "hsa-mir-2114" "hsa-mir-3166" "hsa-mir-3199-1"
## [13] "hsa-mir-3655" "hsa-mir-3923" "hsa-mir-3926-2" "hsa-mir-411"
## [17] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-506" "hsa-mir-507"
## [21] "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3"
## [25] "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"
## [29] "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [33] "hsa-mir-514b" "hsa-mir-582"
## [1] "bicluster1"
## [1] "G6PD.RPPA" "ERBB3.R2Gn" "FN1.R2Gn" "CDH2.R2Gn"
## [5] "CTNNB1.R2Gn" "TGM2.R2Gn" "CCND1.R2Gn" "hsa-mir-1185-1"
## [9] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-1269" "hsa-mir-127"
## [13] "hsa-mir-1270-2" "hsa-mir-134" "hsa-mir-135b" "hsa-mir-136"
## [17] "hsa-mir-154" "hsa-mir-206" "hsa-mir-299" "hsa-mir-3144"
## [21] "hsa-mir-3166" "hsa-mir-3199-1" "hsa-mir-323" "hsa-mir-323b"
## [25] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-3655"
## [29] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [33] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [37] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-3923"
## [41] "hsa-mir-409" "hsa-mir-410" "hsa-mir-411" "hsa-mir-431"
## [45] "hsa-mir-432" "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a"
## [49] "hsa-mir-487b" "hsa-mir-494" "hsa-mir-495" "hsa-mir-496"
## [53] "hsa-mir-510" "hsa-mir-517a" "hsa-mir-520a" "hsa-mir-539"
## [57] "hsa-mir-541" "hsa-mir-543" "hsa-mir-577" "hsa-mir-654"
## [61] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [65] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"f5_bic = select.by.Bic(fabia_5)## [1] "bicluster2"
## [1] "G6PD.RPPA" "FASN.RPPA" "INPP4B.RPPA" "TTF1.RPPA"
## [5] "PRDX1.RPPA" "G6PD.R2Gn" "TGM2.R2Gn" "SQSTM1.R2Gn"
## [9] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193" "hsa-mir-1197"
## [13] "hsa-mir-127" "hsa-mir-134" "hsa-mir-136" "hsa-mir-146a"
## [17] "hsa-mir-154" "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b"
## [21] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369"
## [25] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"
## [29] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379" "hsa-mir-380"
## [33] "hsa-mir-381" "hsa-mir-382" "hsa-mir-409" "hsa-mir-410"
## [37] "hsa-mir-411" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [41] "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b"
## [45] "hsa-mir-489" "hsa-mir-493" "hsa-mir-494" "hsa-mir-495"
## [49] "hsa-mir-496" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"
## [53] "hsa-mir-518b" "hsa-mir-518f" "hsa-mir-539" "hsa-mir-541"
## [57] "hsa-mir-543" "hsa-mir-577" "hsa-mir-605" "hsa-mir-653"
## [61] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [65] "hsa-mir-668" "hsa-mir-758" "hsa-mir-770" "hsa-mir-876"
## [69] "hsa-mir-889"
## [1] "bicluster5"
## [1] "FASN.RPPA" "FN1.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn"
## [5] "hsa-mir-1258" "hsa-mir-135b" "hsa-mir-2114" "hsa-mir-3166"
## [9] "hsa-mir-3199-1" "hsa-mir-3923" "hsa-mir-3926-2" "hsa-mir-506"
## [13] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [17] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [21] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [25] "hsa-mir-514-3" "hsa-mir-514b"
## [1] "bicluster1"
## [1] "G6PD.RPPA" "FASN.RPPA" "TSC1.RPPA" "TTF1.RPPA"
## [5] "ERBB3.R2Gn" "IGFBP2.R2Gn" "TGM2.R2Gn" "hsa-mir-1185-1"
## [9] "hsa-mir-1185-2" "hsa-mir-1193" "hsa-mir-1197" "hsa-mir-1258"
## [13] "hsa-mir-127" "hsa-mir-134" "hsa-mir-136" "hsa-mir-154"
## [17] "hsa-mir-2114" "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b"
## [21] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369"
## [25] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"
## [29] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379" "hsa-mir-380"
## [33] "hsa-mir-381" "hsa-mir-382" "hsa-mir-3909" "hsa-mir-3922"
## [37] "hsa-mir-409" "hsa-mir-410" "hsa-mir-411" "hsa-mir-412"
## [41] "hsa-mir-431" "hsa-mir-432" "hsa-mir-433" "hsa-mir-466"
## [45] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-493"
## [49] "hsa-mir-494" "hsa-mir-495" "hsa-mir-496" "hsa-mir-506"
## [53] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [57] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [61] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [65] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-517a" "hsa-mir-539"
## [69] "hsa-mir-541" "hsa-mir-543" "hsa-mir-585" "hsa-mir-605"
## [73] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [77] "hsa-mir-668" "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster4"
## [1] "G6PD.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn" "CCND1.R2Gn"
## [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1269" "hsa-mir-2114"
## [9] "hsa-mir-3923" "hsa-mir-411" "hsa-mir-485" "hsa-mir-487a"
## [13] "hsa-mir-494" "hsa-mir-507" "hsa-mir-509-2" "hsa-mir-510"
## [17] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-543"
## [21] "hsa-mir-655" "hsa-mir-656"
## [1] "bicluster3"
## [1] "TGM2.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [5] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-380" "hsa-mir-411"
## [9] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494" "hsa-mir-516a-1"
## [13] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [17] "hsa-mir-519a-2" "hsa-mir-520a" "hsa-mir-541" "hsa-mir-655"
## [21] "hsa-mir-656" "hsa-mir-668"f10_bic = select.by.Bic(fabia_10)## [1] "bicluster9"
## [1] "G6PD.RPPA" "BRCA2.RPPA" "FASN.RPPA" "INPP4B.RPPA"
## [5] "TTF1.RPPA" "VHL.RPPA" "PRDX1.RPPA" "G6PD.R2Gn"
## [9] "MET.R2Gn" "FASN.R2Gn" "TGM2.R2Gn" "PXN.R2Gn"
## [13] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"
## [17] "hsa-mir-1197" "hsa-mir-1258" "hsa-mir-1269" "hsa-mir-127"
## [21] "hsa-mir-134" "hsa-mir-136" "hsa-mir-146a" "hsa-mir-153-1"
## [25] "hsa-mir-154" "hsa-mir-196a-2" "hsa-mir-205" "hsa-mir-216b"
## [29] "hsa-mir-224" "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b"
## [33] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369"
## [37] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"
## [41] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379" "hsa-mir-380"
## [45] "hsa-mir-381" "hsa-mir-382" "hsa-mir-409" "hsa-mir-410"
## [49] "hsa-mir-411" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [53] "hsa-mir-433" "hsa-mir-452" "hsa-mir-466" "hsa-mir-485"
## [57] "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-489" "hsa-mir-493"
## [61] "hsa-mir-494" "hsa-mir-495" "hsa-mir-496" "hsa-mir-506"
## [65] "hsa-mir-507" "hsa-mir-508" "hsa-mir-510" "hsa-mir-513a-1"
## [69] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [73] "hsa-mir-514-2" "hsa-mir-516a-2" "hsa-mir-517a" "hsa-mir-518b"
## [77] "hsa-mir-518f" "hsa-mir-520a" "hsa-mir-539" "hsa-mir-541"
## [81] "hsa-mir-543" "hsa-mir-548v" "hsa-mir-577" "hsa-mir-605"
## [85] "hsa-mir-615" "hsa-mir-653" "hsa-mir-654" "hsa-mir-655"
## [89] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-758"
## [93] "hsa-mir-770" "hsa-mir-873" "hsa-mir-876" "hsa-mir-889"
## [1] "bicluster10"
## [1] "G6PD.RPPA" "RBM15.RPPA" "FASN.RPPA" "TSC1.RPPA"
## [5] "TTF1.RPPA" "VHL.RPPA" "AR.RPPA" "TFRC.RPPA"
## [9] "AKT1S1.R2Gn" "IGFBP2.R2Gn" "AKT2.R2Gn" "GATA3.R2Gn"
## [13] "FASN.R2Gn" "CTNNB1.R2Gn" "TGM2.R2Gn" "CCND1.R2Gn"
## [17] "PIK3R1.R2Gn" "PXN.R2Gn" "RPTOR.R2Gn" "SQSTM1.R2Gn"
## [21] "hsa-mir-1185-1" "hsa-mir-1193" "hsa-mir-1197" "hsa-mir-1258"
## [25] "hsa-mir-127" "hsa-mir-1291" "hsa-mir-134" "hsa-mir-136"
## [29] "hsa-mir-154" "hsa-mir-2114" "hsa-mir-3166" "hsa-mir-323"
## [33] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337"
## [37] "hsa-mir-3655" "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1"
## [41] "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-377" "hsa-mir-380"
## [45] "hsa-mir-382" "hsa-mir-3909" "hsa-mir-3922" "hsa-mir-3926-2"
## [49] "hsa-mir-410" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [53] "hsa-mir-466" "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-493"
## [57] "hsa-mir-496" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [61] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [65] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [69] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [73] "hsa-mir-539" "hsa-mir-541" "hsa-mir-552" "hsa-mir-585"
## [77] "hsa-mir-605" "hsa-mir-615" "hsa-mir-653" "hsa-mir-654"
## [81] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [85] "hsa-mir-770" "hsa-mir-876" "hsa-mir-889" "hsa-mir-891a"
## [1] "bicluster7"
## [1] "RBM15.RPPA" "GATA3.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn"
## [5] "GATA3.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn" "hsa-mir-1185-1"
## [9] "hsa-mir-1185-2" "hsa-mir-124-3" "hsa-mir-1269" "hsa-mir-135b"
## [13] "hsa-mir-206" "hsa-mir-2114" "hsa-mir-296" "hsa-mir-3144"
## [17] "hsa-mir-3166" "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-3655"
## [21] "hsa-mir-3923" "hsa-mir-3926-2" "hsa-mir-411" "hsa-mir-429"
## [25] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494" "hsa-mir-506"
## [29] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [33] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [37] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [41] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-543" "hsa-mir-548q"
## [45] "hsa-mir-582" "hsa-mir-655" "hsa-mir-656"
## [1] "bicluster2"
## [1] "G6PD.RPPA" "GATA3.RPPA" "G6PD.R2Gn" "FN1.R2Gn"
## [5] "CTNNB1.R2Gn" "TGM2.R2Gn" "CCND1.R2Gn" "hsa-mir-1185-1"
## [9] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-127" "hsa-mir-134"
## [13] "hsa-mir-136" "hsa-mir-154" "hsa-mir-206" "hsa-mir-299"
## [17] "hsa-mir-3193" "hsa-mir-3199-1" "hsa-mir-323" "hsa-mir-323b"
## [21] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369"
## [25] "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"
## [29] "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379" "hsa-mir-380"
## [33] "hsa-mir-381" "hsa-mir-382" "hsa-mir-409" "hsa-mir-410"
## [37] "hsa-mir-411" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [41] "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b"
## [45] "hsa-mir-493" "hsa-mir-494" "hsa-mir-495" "hsa-mir-496"
## [49] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [53] "hsa-mir-518c" "hsa-mir-518f" "hsa-mir-520a" "hsa-mir-526b"
## [57] "hsa-mir-539" "hsa-mir-541" "hsa-mir-543" "hsa-mir-577"
## [61] "hsa-mir-580" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [65] "hsa-mir-665" "hsa-mir-668" "hsa-mir-758" "hsa-mir-770"
## [69] "hsa-mir-889"
## [1] "bicluster1"
## [1] "G6PD.RPPA" "FN1.R2Gn" "TGM2.R2Gn" "hsa-mir-1185-1"
## [5] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-127" "hsa-mir-134"
## [9] "hsa-mir-136" "hsa-mir-154" "hsa-mir-299" "hsa-mir-323"
## [13] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337"
## [17] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [21] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [25] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-409"
## [29] "hsa-mir-410" "hsa-mir-411" "hsa-mir-412" "hsa-mir-431"
## [33] "hsa-mir-432" "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a"
## [37] "hsa-mir-487b" "hsa-mir-494" "hsa-mir-495" "hsa-mir-496"
## [41] "hsa-mir-539" "hsa-mir-541" "hsa-mir-543" "hsa-mir-654"
## [45] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [49] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster3"
## [1] "TGM2.R2Gn" "hsa-mir-1185-1" "hsa-mir-329-1" "hsa-mir-329-2"
## [5] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-510"
## [9] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513c" "hsa-mir-514b"
## [13] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-656"
## [1] "bicluster8"
## [1] "G6PD.RPPA" "ERBB3.R2Gn" "TGM2.R2Gn" "hsa-mir-1185-1"
## [5] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-1269" "hsa-mir-127"
## [9] "hsa-mir-134" "hsa-mir-136" "hsa-mir-154" "hsa-mir-206"
## [13] "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [17] "hsa-mir-329-2" "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1"
## [21] "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377"
## [25] "hsa-mir-379" "hsa-mir-380" "hsa-mir-381" "hsa-mir-382"
## [29] "hsa-mir-409" "hsa-mir-410" "hsa-mir-411" "hsa-mir-432"
## [33] "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b"
## [37] "hsa-mir-494" "hsa-mir-496" "hsa-mir-517a" "hsa-mir-539"
## [41] "hsa-mir-541" "hsa-mir-543" "hsa-mir-654" "hsa-mir-655"
## [45] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-758"
## [49] "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster6"
## [1] "FASN.RPPA" "hsa-mir-3934" "hsa-mir-466" "hsa-mir-510" "hsa-mir-605"
## [1] "bicluster5"
## character(0)
## [1] "bicluster4"
## [1] "G6PD.RPPA"f15_bic = select.by.Bic(fabia_15)## [1] "bicluster10"
## [1] "G6PD.RPPA" "RBM15.RPPA" "PTEN.RPPA" "ATM.RPPA"
## [5] "FASN.RPPA" "TSC1.RPPA" "VHL.RPPA" "TFRC.RPPA"
## [9] "ERBB3.R2Gn" "IGFBP2.R2Gn" "AKT2.R2Gn" "CDH2.R2Gn"
## [13] "FASN.R2Gn" "CTNNB1.R2Gn" "PIK3R1.R2Gn" "GAPDH.R2Gn"
## [17] "PXN.R2Gn" "RPTOR.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [21] "hsa-mir-1193" "hsa-mir-1197" "hsa-mir-1224" "hsa-mir-1258"
## [25] "hsa-mir-127" "hsa-mir-1291" "hsa-mir-136" "hsa-mir-154"
## [29] "hsa-mir-2114" "hsa-mir-3166" "hsa-mir-3199-1" "hsa-mir-320c-2"
## [33] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [37] "hsa-mir-337" "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1"
## [41] "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-377" "hsa-mir-380"
## [45] "hsa-mir-382" "hsa-mir-3909" "hsa-mir-3922" "hsa-mir-3923"
## [49] "hsa-mir-3926-2" "hsa-mir-410" "hsa-mir-412" "hsa-mir-431"
## [53] "hsa-mir-432" "hsa-mir-433" "hsa-mir-466" "hsa-mir-487a"
## [57] "hsa-mir-487b" "hsa-mir-490" "hsa-mir-493" "hsa-mir-496"
## [61] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [65] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [69] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [73] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-539"
## [77] "hsa-mir-541" "hsa-mir-552" "hsa-mir-585" "hsa-mir-605"
## [81] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [85] "hsa-mir-668" "hsa-mir-767" "hsa-mir-770" "hsa-mir-876"
## [89] "hsa-mir-889" "hsa-mir-891a"
## [1] "bicluster9"
## [1] "G6PD.RPPA" "RBM15.RPPA" "FASN.RPPA" "INPP4B.RPPA"
## [5] "TTF1.RPPA" "VHL.RPPA" "PRDX1.RPPA" "G6PD.R2Gn"
## [9] "TGM2.R2Gn" "CTNNA1.R2Gn" "PIK3R1.R2Gn" "BCL2L1.R2Gn"
## [13] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [17] "hsa-mir-1269" "hsa-mir-127" "hsa-mir-134" "hsa-mir-136"
## [21] "hsa-mir-154" "hsa-mir-216b" "hsa-mir-299" "hsa-mir-323"
## [25] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337"
## [29] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [33] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [37] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-409"
## [41] "hsa-mir-410" "hsa-mir-411" "hsa-mir-412" "hsa-mir-431"
## [45] "hsa-mir-432" "hsa-mir-433" "hsa-mir-466" "hsa-mir-485"
## [49] "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-489" "hsa-mir-493"
## [53] "hsa-mir-494" "hsa-mir-495" "hsa-mir-496" "hsa-mir-506"
## [57] "hsa-mir-507" "hsa-mir-508" "hsa-mir-510" "hsa-mir-513a-1"
## [61] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-516a-1"
## [65] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [69] "hsa-mir-520a" "hsa-mir-526b" "hsa-mir-539" "hsa-mir-541"
## [73] "hsa-mir-543" "hsa-mir-577" "hsa-mir-654" "hsa-mir-655"
## [77] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-758"
## [81] "hsa-mir-770" "hsa-mir-876" "hsa-mir-889"
## [1] "bicluster13"
## [1] "G6PD.RPPA" "RBM15.RPPA" "FASN.RPPA" "INPP4B.RPPA"
## [5] "TTF1.RPPA" "PRDX1.RPPA" "G6PD.R2Gn" "AKT1S1.R2Gn"
## [9] "IGFBP2.R2Gn" "FN1.R2Gn" "AKT2.R2Gn" "TGM2.R2Gn"
## [13] "COL6A1.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [17] "hsa-mir-1193" "hsa-mir-1197" "hsa-mir-127" "hsa-mir-134"
## [21] "hsa-mir-136" "hsa-mir-146a" "hsa-mir-154" "hsa-mir-184"
## [25] "hsa-mir-205" "hsa-mir-206" "hsa-mir-299" "hsa-mir-323"
## [29] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337"
## [33] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [37] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [41] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-3922"
## [45] "hsa-mir-409" "hsa-mir-410" "hsa-mir-411" "hsa-mir-412"
## [49] "hsa-mir-431" "hsa-mir-432" "hsa-mir-433" "hsa-mir-466"
## [53] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-493"
## [57] "hsa-mir-494" "hsa-mir-495" "hsa-mir-496" "hsa-mir-506"
## [61] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [65] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [69] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [73] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-516a-1" "hsa-mir-516a-2"
## [77] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-518f"
## [81] "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a" "hsa-mir-526b"
## [85] "hsa-mir-539" "hsa-mir-541" "hsa-mir-543" "hsa-mir-552"
## [89] "hsa-mir-585" "hsa-mir-605" "hsa-mir-615" "hsa-mir-653"
## [93] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [97] "hsa-mir-668" "hsa-mir-758" "hsa-mir-767" "hsa-mir-770"
## [101] "hsa-mir-889" "hsa-mir-891a"
## [1] "bicluster2"
## [1] "G6PD.RPPA" "TTF1.RPPA" "G6PD.R2Gn" "ERBB3.R2Gn"
## [5] "CTNNB1.R2Gn" "TGM2.R2Gn" "CCND1.R2Gn" "SQSTM1.R2Gn"
## [9] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-124-1"
## [13] "hsa-mir-124-3" "hsa-mir-127" "hsa-mir-134" "hsa-mir-135b"
## [17] "hsa-mir-136" "hsa-mir-154" "hsa-mir-206" "hsa-mir-299"
## [21] "hsa-mir-3166" "hsa-mir-3193" "hsa-mir-3199-1" "hsa-mir-323"
## [25] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337"
## [29] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [33] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [37] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-409"
## [41] "hsa-mir-410" "hsa-mir-411" "hsa-mir-412" "hsa-mir-431"
## [45] "hsa-mir-432" "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a"
## [49] "hsa-mir-487b" "hsa-mir-493" "hsa-mir-494" "hsa-mir-495"
## [53] "hsa-mir-496" "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a"
## [57] "hsa-mir-518b" "hsa-mir-518c" "hsa-mir-520a" "hsa-mir-539"
## [61] "hsa-mir-541" "hsa-mir-543" "hsa-mir-577" "hsa-mir-580"
## [65] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [69] "hsa-mir-668" "hsa-mir-670" "hsa-mir-758" "hsa-mir-770"
## [73] "hsa-mir-889" "hsa-mir-935"
## [1] "bicluster11"
## [1] "GATA3.RPPA" "ERBB3.R2Gn" "FN1.R2Gn" "GATA3.R2Gn"
## [5] "CTNNB1.R2Gn" "CCND1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [9] "hsa-mir-124-3" "hsa-mir-135b" "hsa-mir-206" "hsa-mir-296"
## [13] "hsa-mir-3166" "hsa-mir-3199-1" "hsa-mir-323b" "hsa-mir-329-1"
## [17] "hsa-mir-3655" "hsa-mir-380" "hsa-mir-3923" "hsa-mir-3926-2"
## [21] "hsa-mir-411" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494"
## [25] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [29] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [33] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [37] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-516a-1"
## [41] "hsa-mir-516a-2" "hsa-mir-517a" "hsa-mir-519a-2" "hsa-mir-520a"
## [45] "hsa-mir-525" "hsa-mir-526b" "hsa-mir-541" "hsa-mir-543"
## [49] "hsa-mir-655" "hsa-mir-656" "hsa-mir-668"
## [1] "bicluster1"
## [1] "G6PD.RPPA" "TGM2.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [5] "hsa-mir-1197" "hsa-mir-124-3" "hsa-mir-127" "hsa-mir-134"
## [9] "hsa-mir-136" "hsa-mir-154" "hsa-mir-299" "hsa-mir-323"
## [13] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337"
## [17] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [21] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [25] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-409"
## [29] "hsa-mir-410" "hsa-mir-411" "hsa-mir-431" "hsa-mir-432"
## [33] "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b"
## [37] "hsa-mir-494" "hsa-mir-495" "hsa-mir-496" "hsa-mir-539"
## [41] "hsa-mir-541" "hsa-mir-543" "hsa-mir-577" "hsa-mir-654"
## [45] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [49] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster12"
## [1] "IGFBP2.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn" "GATA3.R2Gn"
## [5] "CTNNB1.R2Gn" "CCND1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [9] "hsa-mir-124-3" "hsa-mir-1269" "hsa-mir-135b" "hsa-mir-206"
## [13] "hsa-mir-2114" "hsa-mir-296" "hsa-mir-3144" "hsa-mir-3166"
## [17] "hsa-mir-3199-1" "hsa-mir-329-1" "hsa-mir-3655" "hsa-mir-3923"
## [21] "hsa-mir-3926-2" "hsa-mir-411" "hsa-mir-429" "hsa-mir-485"
## [25] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-506" "hsa-mir-507"
## [29] "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3"
## [33] "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"
## [37] "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [41] "hsa-mir-514b" "hsa-mir-543" "hsa-mir-548q" "hsa-mir-655"
## [45] "hsa-mir-656"
## [1] "bicluster7"
## [1] "GATA3.RPPA" "FN1.R2Gn" "GATA3.R2Gn" "CTNNB1.R2Gn"
## [5] "CCND1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-124-3"
## [9] "hsa-mir-1269" "hsa-mir-135b" "hsa-mir-206" "hsa-mir-2114"
## [13] "hsa-mir-296" "hsa-mir-3166" "hsa-mir-3199-1" "hsa-mir-320c-2"
## [17] "hsa-mir-3655" "hsa-mir-3923" "hsa-mir-3926-2" "hsa-mir-411"
## [21] "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494"
## [25] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [29] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [33] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [37] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-543"
## [41] "hsa-mir-548q" "hsa-mir-582" "hsa-mir-655" "hsa-mir-656"
## [45] "hsa-mir-668"
## [1] "bicluster15"
## [1] "G6PD.RPPA" "RBM15.RPPA" "FASN.RPPA" "TTF1.RPPA"
## [5] "VHL.RPPA" "AKT2.R2Gn" "ANXA1.R2Gn" "PXN.R2Gn"
## [9] "SQSTM1.R2Gn" "hsa-mir-1258" "hsa-mir-196a-2" "hsa-mir-196b"
## [13] "hsa-mir-2114" "hsa-mir-329-2" "hsa-mir-3926-2" "hsa-mir-466"
## [17] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [21] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [29] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-552"
## [33] "hsa-mir-605" "hsa-mir-615" "hsa-mir-656" "hsa-mir-665"
## [37] "hsa-mir-876"
## [1] "bicluster8"
## [1] "G6PD.RPPA" "ERBB3.R2Gn" "ERRFI1.R2Gn" "hsa-mir-1185-1"
## [5] "hsa-mir-656"
## [1] "bicluster3"
## [1] "ERBB3.R2Gn" "hsa-mir-192" "hsa-mir-194-1" "hsa-mir-194-2"
## [5] "hsa-mir-3170" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [1] "bicluster14"
## [1] "CTNNB1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1269"
## [5] "hsa-mir-329-1" "hsa-mir-411" "hsa-mir-433" "hsa-mir-485"
## [9] "hsa-mir-487a" "hsa-mir-517a" "hsa-mir-541" "hsa-mir-655"
## [13] "hsa-mir-656" "hsa-mir-668"
## [1] "bicluster5"
## [1] "GAPDH.R2Gn"
## [1] "bicluster6"
## [1] "FASN.RPPA" "hsa-mir-605"
## [1] "bicluster4"
## character(0)f20_bic = select.by.Bic(fabia_20)## [1] "bicluster10"
## [1] "G6PD.RPPA" "RBM15.RPPA" "PTEN.RPPA" "ATM.RPPA"
## [5] "FASN.RPPA" "TSC1.RPPA" "TTF1.RPPA" "VHL.RPPA"
## [9] "PRDX1.RPPA" "GAPDH.RPPA" "MSH6.RPPA" "TFRC.RPPA"
## [13] "PREX1.RPPA" "FN1.R2Gn" "PEA15.R2Gn" "XRCC5.R2Gn"
## [17] "FASN.R2Gn" "CTNNB1.R2Gn" "YBX1.R2Gn" "PRKCA.R2Gn"
## [21] "STMN1.R2Gn" "PIK3R1.R2Gn" "PRDX1.R2Gn" "GAPDH.R2Gn"
## [25] "ANXA1.R2Gn" "HSPA1A.R2Gn" "PXN.R2Gn" "hsa-mir-105-1"
## [29] "hsa-mir-105-2" "hsa-mir-1185-1" "hsa-mir-1224" "hsa-mir-1258"
## [33] "hsa-mir-1293" "hsa-mir-135b" "hsa-mir-199a-1" "hsa-mir-199a-2"
## [37] "hsa-mir-199b" "hsa-mir-2114" "hsa-mir-214" "hsa-mir-3166"
## [41] "hsa-mir-320c-2" "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-33b"
## [45] "hsa-mir-376a-1" "hsa-mir-3909" "hsa-mir-3922" "hsa-mir-3923"
## [49] "hsa-mir-3926-2" "hsa-mir-3940" "hsa-mir-466" "hsa-mir-490"
## [53] "hsa-mir-493" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [57] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [61] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [65] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [69] "hsa-mir-544" "hsa-mir-585" "hsa-mir-605" "hsa-mir-653"
## [73] "hsa-mir-656" "hsa-mir-664" "hsa-mir-665" "hsa-mir-767"
## [77] "hsa-mir-770" "hsa-mir-876"
## [1] "bicluster9"
## [1] "G6PD.RPPA" "RBM15.RPPA" "GATA3.RPPA" "FASN.RPPA"
## [5] "INPP4B.RPPA" "TTF1.RPPA" "VHL.RPPA" "PRDX1.RPPA"
## [9] "G6PD.R2Gn" "ADAR.R2Gn" "CTNNB1.R2Gn" "TGM2.R2Gn"
## [13] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [17] "hsa-mir-1269" "hsa-mir-127" "hsa-mir-134" "hsa-mir-136"
## [21] "hsa-mir-146a" "hsa-mir-154" "hsa-mir-206" "hsa-mir-216b"
## [25] "hsa-mir-217" "hsa-mir-224" "hsa-mir-299" "hsa-mir-3199-1"
## [29] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [33] "hsa-mir-337" "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1"
## [37] "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377"
## [41] "hsa-mir-379" "hsa-mir-380" "hsa-mir-381" "hsa-mir-382"
## [45] "hsa-mir-409" "hsa-mir-410" "hsa-mir-411" "hsa-mir-412"
## [49] "hsa-mir-431" "hsa-mir-432" "hsa-mir-433" "hsa-mir-452"
## [53] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-489"
## [57] "hsa-mir-493" "hsa-mir-494" "hsa-mir-495" "hsa-mir-496"
## [61] "hsa-mir-516a-1" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [65] "hsa-mir-520a" "hsa-mir-525" "hsa-mir-539" "hsa-mir-541"
## [69] "hsa-mir-543" "hsa-mir-577" "hsa-mir-580" "hsa-mir-653"
## [73] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [77] "hsa-mir-668" "hsa-mir-758" "hsa-mir-770" "hsa-mir-873"
## [81] "hsa-mir-876" "hsa-mir-889"
## [1] "bicluster19"
## [1] "G6PD.RPPA" "INPP4B.RPPA" "FN1.R2Gn" "ADAR.R2Gn"
## [5] "CTNNB1.R2Gn" "TGM2.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1"
## [9] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-1269" "hsa-mir-127"
## [13] "hsa-mir-133b" "hsa-mir-134" "hsa-mir-135b" "hsa-mir-136"
## [17] "hsa-mir-154" "hsa-mir-205" "hsa-mir-206" "hsa-mir-299"
## [21] "hsa-mir-3193" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [25] "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-3655" "hsa-mir-3678"
## [29] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [33] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [37] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-409"
## [41] "hsa-mir-410" "hsa-mir-411" "hsa-mir-412" "hsa-mir-431"
## [45] "hsa-mir-432" "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a"
## [49] "hsa-mir-487b" "hsa-mir-489" "hsa-mir-493" "hsa-mir-494"
## [53] "hsa-mir-495" "hsa-mir-496" "hsa-mir-516a-1" "hsa-mir-516a-2"
## [57] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-518c"
## [61] "hsa-mir-518f" "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"
## [65] "hsa-mir-525" "hsa-mir-526b" "hsa-mir-539" "hsa-mir-541"
## [69] "hsa-mir-543" "hsa-mir-577" "hsa-mir-580" "hsa-mir-654"
## [73] "hsa-mir-655" "hsa-mir-656" "hsa-mir-665" "hsa-mir-668"
## [77] "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster1"
## [1] "G6PD.RPPA" "TTF1.RPPA" "CTNNB1.R2Gn" "TGM2.R2Gn"
## [5] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"
## [9] "hsa-mir-124-3" "hsa-mir-127" "hsa-mir-1270-2" "hsa-mir-134"
## [13] "hsa-mir-136" "hsa-mir-138-1" "hsa-mir-154" "hsa-mir-299"
## [17] "hsa-mir-3193" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [21] "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369" "hsa-mir-370"
## [25] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c"
## [29] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-381"
## [33] "hsa-mir-382" "hsa-mir-409" "hsa-mir-410" "hsa-mir-411"
## [37] "hsa-mir-412" "hsa-mir-431" "hsa-mir-432" "hsa-mir-433"
## [41] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-493"
## [45] "hsa-mir-494" "hsa-mir-495" "hsa-mir-496" "hsa-mir-539"
## [49] "hsa-mir-541" "hsa-mir-543" "hsa-mir-577" "hsa-mir-580"
## [53] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [57] "hsa-mir-668" "hsa-mir-758" "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster2"
## [1] "TGM2.R2Gn" "PIK3R1.R2Gn" "BCL2L1.R2Gn" "SQSTM1.R2Gn"
## [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-124-1"
## [9] "hsa-mir-124-3" "hsa-mir-127" "hsa-mir-134" "hsa-mir-136"
## [13] "hsa-mir-154" "hsa-mir-206" "hsa-mir-299" "hsa-mir-3173"
## [17] "hsa-mir-3193" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [21] "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-369" "hsa-mir-370"
## [25] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c"
## [29] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-381"
## [33] "hsa-mir-382" "hsa-mir-409" "hsa-mir-410" "hsa-mir-411"
## [37] "hsa-mir-412" "hsa-mir-431" "hsa-mir-432" "hsa-mir-433"
## [41] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-494"
## [45] "hsa-mir-495" "hsa-mir-496" "hsa-mir-516a-1" "hsa-mir-516a-2"
## [49] "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-518c" "hsa-mir-520a"
## [53] "hsa-mir-526b" "hsa-mir-539" "hsa-mir-541" "hsa-mir-543"
## [57] "hsa-mir-580" "hsa-mir-654" "hsa-mir-655" "hsa-mir-656"
## [61] "hsa-mir-665" "hsa-mir-668" "hsa-mir-670" "hsa-mir-758"
## [65] "hsa-mir-770" "hsa-mir-873" "hsa-mir-889"
## [1] "bicluster16"
## [1] "FASN.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn" "ERRFI1.R2Gn"
## [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193" "hsa-mir-1197"
## [9] "hsa-mir-1245" "hsa-mir-200b" "hsa-mir-323" "hsa-mir-323b"
## [13] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-376a-1" "hsa-mir-380"
## [17] "hsa-mir-3922" "hsa-mir-410" "hsa-mir-412" "hsa-mir-431"
## [21] "hsa-mir-432" "hsa-mir-433" "hsa-mir-466" "hsa-mir-487a"
## [25] "hsa-mir-487b" "hsa-mir-488" "hsa-mir-493" "hsa-mir-496"
## [29] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [33] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [37] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [41] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-541"
## [45] "hsa-mir-656" "hsa-mir-668" "hsa-mir-770"
## [1] "bicluster17"
## [1] "G6PD.RPPA" "RBM15.RPPA" "PTEN.RPPA" "FASN.RPPA"
## [5] "TSC1.RPPA" "PDCD4.RPPA" "VHL.RPPA" "GATA3.R2Gn"
## [9] "PEA15.R2Gn" "ADAR.R2Gn" "CTNNB1.R2Gn" "SHC1.R2Gn"
## [13] "CCND1.R2Gn" "PXN.R2Gn" "hsa-mir-124-3" "hsa-mir-1258"
## [17] "hsa-mir-135b" "hsa-mir-2114" "hsa-mir-3166" "hsa-mir-3199-1"
## [21] "hsa-mir-320c-2" "hsa-mir-329-2" "hsa-mir-3926-2" "hsa-mir-466"
## [25] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [29] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [33] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [37] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-605"
## [41] "hsa-mir-767"
## [1] "bicluster15"
## [1] "G6PD.RPPA" "RBM15.RPPA" "PTEN.RPPA" "FASN.RPPA"
## [5] "TSC1.RPPA" "TTF1.RPPA" "VHL.RPPA" "AR.RPPA"
## [9] "PRDX1.RPPA" "MSH6.RPPA" "PREX1.RPPA" "G6PD.R2Gn"
## [13] "MET.R2Gn" "FASN.R2Gn" "TGM2.R2Gn" "PIK3R1.R2Gn"
## [17] "ANXA1.R2Gn" "PXN.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1"
## [21] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-1258" "hsa-mir-127"
## [25] "hsa-mir-134" "hsa-mir-136" "hsa-mir-154" "hsa-mir-196a-2"
## [29] "hsa-mir-196b" "hsa-mir-2114" "hsa-mir-216b" "hsa-mir-218-1"
## [33] "hsa-mir-299" "hsa-mir-3170" "hsa-mir-3173" "hsa-mir-323"
## [37] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337"
## [41] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [45] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [49] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-3926-2"
## [53] "hsa-mir-3940" "hsa-mir-409" "hsa-mir-410" "hsa-mir-411"
## [57] "hsa-mir-431" "hsa-mir-432" "hsa-mir-433" "hsa-mir-466"
## [61] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-489"
## [65] "hsa-mir-494" "hsa-mir-495" "hsa-mir-496" "hsa-mir-506"
## [69] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [73] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [77] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [81] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-539" "hsa-mir-541"
## [85] "hsa-mir-543" "hsa-mir-605" "hsa-mir-615" "hsa-mir-653"
## [89] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [93] "hsa-mir-668" "hsa-mir-758" "hsa-mir-770" "hsa-mir-873"
## [97] "hsa-mir-876" "hsa-mir-889"
## [1] "bicluster13"
## [1] "FASN.RPPA" "FN1.R2Gn" "TGM2.R2Gn" "COL6A1.R2Gn"
## [5] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"
## [9] "hsa-mir-1197" "hsa-mir-127" "hsa-mir-134" "hsa-mir-136"
## [13] "hsa-mir-154" "hsa-mir-184" "hsa-mir-299" "hsa-mir-323"
## [17] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337"
## [21] "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [25] "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377" "hsa-mir-379"
## [29] "hsa-mir-380" "hsa-mir-381" "hsa-mir-382" "hsa-mir-3922"
## [33] "hsa-mir-409" "hsa-mir-410" "hsa-mir-411" "hsa-mir-412"
## [37] "hsa-mir-431" "hsa-mir-432" "hsa-mir-433" "hsa-mir-466"
## [41] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-494"
## [45] "hsa-mir-496" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [49] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [53] "hsa-mir-511-1" "hsa-mir-511-2" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [57] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [61] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-516a-2" "hsa-mir-518b"
## [65] "hsa-mir-518f" "hsa-mir-539" "hsa-mir-541" "hsa-mir-543"
## [69] "hsa-mir-605" "hsa-mir-653" "hsa-mir-654" "hsa-mir-655"
## [73] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-758"
## [77] "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster7"
## [1] "GATA3.RPPA" "EGFR.RPPA" "TSC1.RPPA" "TFRC.RPPA"
## [5] "FN1.R2Gn" "CDH2.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn"
## [9] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-124-1" "hsa-mir-124-3"
## [13] "hsa-mir-1269" "hsa-mir-135b" "hsa-mir-139" "hsa-mir-206"
## [17] "hsa-mir-2114" "hsa-mir-296" "hsa-mir-3166" "hsa-mir-3199-1"
## [21] "hsa-mir-320c-2" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-3655"
## [25] "hsa-mir-3923" "hsa-mir-411" "hsa-mir-429" "hsa-mir-433"
## [29] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494" "hsa-mir-506"
## [33] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [37] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [41] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [45] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-543" "hsa-mir-548j"
## [49] "hsa-mir-582" "hsa-mir-655" "hsa-mir-656" "hsa-mir-668"
## [1] "bicluster20"
## [1] "ERBB3.R2Gn" "FN1.R2Gn" "hsa-mir-1185-1" "hsa-mir-135b"
## [5] "hsa-mir-3923" "hsa-mir-3926-2" "hsa-mir-507" "hsa-mir-510"
## [9] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-656"
## [1] "bicluster12"
## [1] "RBM15.RPPA" "TFRC.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn"
## [5] "GATA3.R2Gn" "EEF2.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn"
## [9] "hsa-mir-1258" "hsa-mir-135b" "hsa-mir-2114" "hsa-mir-3166"
## [13] "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-3655" "hsa-mir-3923"
## [17] "hsa-mir-429" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [21] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [25] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [29] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [1] "bicluster11"
## [1] "GATA3.RPPA" "EGFR.RPPA" "CTNNB1.R2Gn" "CCND1.R2Gn"
## [5] "hsa-mir-1185-1" "hsa-mir-135b" "hsa-mir-206" "hsa-mir-3166"
## [9] "hsa-mir-3199-1" "hsa-mir-411" "hsa-mir-485" "hsa-mir-487a"
## [13] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [17] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [21] "hsa-mir-513a-2" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [25] "hsa-mir-514b" "hsa-mir-516a-1" "hsa-mir-525" "hsa-mir-580"
## [29] "hsa-mir-655" "hsa-mir-656"
## [1] "bicluster14"
## [1] "G6PD.RPPA" "ATM.RPPA" "GAPDH.RPPA" "ERBB3.R2Gn"
## [5] "FN1.R2Gn" "GAPDH.R2Gn" "hsa-mir-105-1" "hsa-mir-1269"
## [9] "hsa-mir-200b" "hsa-mir-214" "hsa-mir-517a" "hsa-mir-552"
## [13] "hsa-mir-767"
## [1] "bicluster18"
## [1] "ERBB3.R2Gn" "GATA3.R2Gn" "GAPDH.R2Gn" "hsa-mir-3170"
## [5] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [9] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [13] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-514-1" "hsa-mir-514-2"
## [17] "hsa-mir-514-3" "hsa-mir-514b"
## [1] "bicluster5"
## [1] "ATM.RPPA" "GAPDH.RPPA" "ADAR.R2Gn" "CTNNB1.R2Gn" "GAPDH.R2Gn"
## [1] "bicluster6"
## [1] "G6PD.RPPA" "RBM15.RPPA" "ATM.RPPA" "FASN.RPPA" "MSH6.RPPA"
## [6] "TFRC.RPPA" "FN1.R2Gn" "hsa-mir-135b" "hsa-mir-605" "hsa-mir-876"
## [1] "bicluster3"
## [1] "ERBB3.R2Gn" "ADAR.R2Gn" "hsa-mir-1185-1" "hsa-mir-516a-1"
## [5] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [9] "hsa-mir-519a-2" "hsa-mir-656"
## [1] "bicluster8"
## [1] "ERBB3.R2Gn" "FN1.R2Gn" "ERRFI1.R2Gn" "hsa-mir-552"
## [1] "bicluster4"
## [1] "G6PD.RPPA" "FN1.R2Gn"f35_bic = select.by.Bic(fabia_35)## [1] "bicluster21"
## [1] "G6PD.RPPA" "RBM15.RPPA" "PTEN.RPPA" "FASN.RPPA"
## [5] "VHL.RPPA" "TFRC.RPPA" "AKT1S1.R2Gn" "IGFBP2.R2Gn"
## [9] "FN1.R2Gn" "CDH2.R2Gn" "GATA3.R2Gn" "RPS6.R2Gn"
## [13] "PXN.R2Gn" "SYP.R2Gn" "hsa-mir-1185-1" "hsa-mir-1193"
## [17] "hsa-mir-124-1" "hsa-mir-124-3" "hsa-mir-1258" "hsa-mir-1291"
## [21] "hsa-mir-135b" "hsa-mir-153-1" "hsa-mir-153-2" "hsa-mir-26a-1"
## [25] "hsa-mir-3166" "hsa-mir-3191" "hsa-mir-3199-1" "hsa-mir-320c-2"
## [29] "hsa-mir-329-2" "hsa-mir-3655" "hsa-mir-3682" "hsa-mir-3690"
## [33] "hsa-mir-376a-2" "hsa-mir-383" "hsa-mir-3909" "hsa-mir-3923"
## [37] "hsa-mir-3926-2" "hsa-mir-3934" "hsa-mir-412" "hsa-mir-432"
## [41] "hsa-mir-433" "hsa-mir-466" "hsa-mir-493" "hsa-mir-499"
## [45] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [49] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [53] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [57] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-516a-1"
## [61] "hsa-mir-519a-2" "hsa-mir-544" "hsa-mir-548s" "hsa-mir-548v"
## [65] "hsa-mir-550a-2" "hsa-mir-552" "hsa-mir-580" "hsa-mir-581"
## [69] "hsa-mir-585" "hsa-mir-592" "hsa-mir-605" "hsa-mir-639"
## [73] "hsa-mir-653" "hsa-mir-676" "hsa-mir-767" "hsa-mir-770"
## [1] "bicluster19"
## [1] "ASNS.RPPA" "INPP4B.RPPA" "CDK1.RPPA" "MYH11.RPPA"
## [5] "ERBB3.R2Gn" "FN1.R2Gn" "CTNNB1.R2Gn" "TGM2.R2Gn"
## [9] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-1269"
## [13] "hsa-mir-127" "hsa-mir-134" "hsa-mir-136" "hsa-mir-138-1"
## [17] "hsa-mir-146a" "hsa-mir-154" "hsa-mir-205" "hsa-mir-206"
## [21] "hsa-mir-299" "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1"
## [25] "hsa-mir-329-2" "hsa-mir-3655" "hsa-mir-369" "hsa-mir-370"
## [29] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c"
## [33] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-381"
## [37] "hsa-mir-382" "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-3940"
## [41] "hsa-mir-409" "hsa-mir-410" "hsa-mir-411" "hsa-mir-412"
## [45] "hsa-mir-431" "hsa-mir-432" "hsa-mir-433" "hsa-mir-485"
## [49] "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-494" "hsa-mir-495"
## [53] "hsa-mir-496" "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1"
## [57] "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-518c" "hsa-mir-518f"
## [61] "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a" "hsa-mir-525"
## [65] "hsa-mir-526b" "hsa-mir-539" "hsa-mir-541" "hsa-mir-543"
## [69] "hsa-mir-551b" "hsa-mir-577" "hsa-mir-654" "hsa-mir-655"
## [73] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-758"
## [77] "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster16"
## [1] "GATA3.RPPA" "PDCD4.RPPA" "PREX1.RPPA" "ERBB3.R2Gn"
## [5] "IGFBP2.R2Gn" "PRKCA.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn"
## [9] "RBM3.R2Gn" "RPTOR.R2Gn" "hsa-mir-1185-1" "hsa-mir-1197"
## [13] "hsa-mir-1228" "hsa-mir-1245" "hsa-mir-1270-1" "hsa-mir-135a-1"
## [17] "hsa-mir-184" "hsa-mir-200b" "hsa-mir-214" "hsa-mir-3170"
## [21] "hsa-mir-323b" "hsa-mir-335" "hsa-mir-3678" "hsa-mir-3909"
## [25] "hsa-mir-3922" "hsa-mir-412" "hsa-mir-431" "hsa-mir-432"
## [29] "hsa-mir-455" "hsa-mir-466" "hsa-mir-488" "hsa-mir-493"
## [33] "hsa-mir-506" "hsa-mir-507" "hsa-mir-510" "hsa-mir-541"
## [37] "hsa-mir-550a-2" "hsa-mir-656" "hsa-mir-668" "hsa-mir-876"
## [41] "hsa-mir-937"
## [1] "bicluster24"
## [1] "G6PD.RPPA" "RBM15.RPPA" "FASN.RPPA" "INPP4B.RPPA"
## [5] "TSC1.RPPA" "TTF1.RPPA" "CDK1.RPPA" "VHL.RPPA"
## [9] "PRDX1.RPPA" "XBP1.RPPA" "GAPDH.RPPA" "MSH6.RPPA"
## [13] "PDK1.RPPA" "TFRC.RPPA" "PREX1.RPPA" "MAPK14.R2Gn"
## [17] "G6PD.R2Gn" "NEK7.R2Gn" "FASN.R2Gn" "EEF2.R2Gn"
## [21] "CHEK2.R2Gn" "CTNNB1.R2Gn" "PRKCA.R2Gn" "STMN1.R2Gn"
## [25] "TGM2.R2Gn" "CTNNA1.R2Gn" "MYC.R2Gn" "PIK3R1.R2Gn"
## [29] "FOXM1.R2Gn" "HSPA1A.R2Gn" "PXN.R2Gn" "PREX1.R2Gn"
## [33] "SQSTM1.R2Gn" "hsa-mir-101-2" "hsa-mir-103-2" "hsa-mir-1185-1"
## [37] "hsa-mir-1197" "hsa-mir-122" "hsa-mir-1258" "hsa-mir-127"
## [41] "hsa-mir-1270-1" "hsa-mir-1291" "hsa-mir-134" "hsa-mir-136"
## [45] "hsa-mir-137" "hsa-mir-139" "hsa-mir-140" "hsa-mir-146a"
## [49] "hsa-mir-154" "hsa-mir-200a" "hsa-mir-224" "hsa-mir-26a-1"
## [53] "hsa-mir-299" "hsa-mir-3170" "hsa-mir-323" "hsa-mir-323b"
## [57] "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337" "hsa-mir-3607"
## [61] "hsa-mir-3687" "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1"
## [65] "hsa-mir-376a-2" "hsa-mir-377" "hsa-mir-379" "hsa-mir-380"
## [69] "hsa-mir-381" "hsa-mir-382" "hsa-mir-3909" "hsa-mir-3934"
## [73] "hsa-mir-3940" "hsa-mir-409" "hsa-mir-466" "hsa-mir-487a"
## [77] "hsa-mir-487b" "hsa-mir-489" "hsa-mir-494" "hsa-mir-495"
## [81] "hsa-mir-496" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [85] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [89] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [93] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-539"
## [97] "hsa-mir-541" "hsa-mir-548q" "hsa-mir-548v" "hsa-mir-551b"
## [101] "hsa-mir-552" "hsa-mir-577" "hsa-mir-605" "hsa-mir-607"
## [105] "hsa-mir-636" "hsa-mir-653" "hsa-mir-654" "hsa-mir-655"
## [109] "hsa-mir-656" "hsa-mir-665" "hsa-mir-758" "hsa-mir-770"
## [113] "hsa-mir-873" "hsa-mir-876" "hsa-mir-889"
## [1] "bicluster9"
## [1] "G6PD.RPPA" "GATA3.RPPA" "EGFR.RPPA" "FASN.RPPA"
## [5] "INPP4B.RPPA" "TTF1.RPPA" "VHL.RPPA" "PRDX1.RPPA"
## [9] "MSH6.RPPA" "MYH11.RPPA" "G6PD.R2Gn" "FN1.R2Gn"
## [13] "CTNNB1.R2Gn" "TGM2.R2Gn" "CTNNA1.R2Gn" "BCL2L1.R2Gn"
## [17] "YWHAB.R2Gn" "HSPA1A.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1"
## [21] "hsa-mir-1185-2" "hsa-mir-1197" "hsa-mir-1228" "hsa-mir-1247"
## [25] "hsa-mir-1269" "hsa-mir-127" "hsa-mir-134" "hsa-mir-136"
## [29] "hsa-mir-154" "hsa-mir-196a-2" "hsa-mir-216b" "hsa-mir-218-1"
## [33] "hsa-mir-299" "hsa-mir-301b" "hsa-mir-30c-1" "hsa-mir-320c-2"
## [37] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [41] "hsa-mir-337" "hsa-mir-3607" "hsa-mir-369" "hsa-mir-370"
## [45] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c"
## [49] "hsa-mir-377" "hsa-mir-379" "hsa-mir-380" "hsa-mir-381"
## [53] "hsa-mir-382" "hsa-mir-409" "hsa-mir-410" "hsa-mir-411"
## [57] "hsa-mir-431" "hsa-mir-432" "hsa-mir-433" "hsa-mir-485"
## [61] "hsa-mir-487a" "hsa-mir-487b" "hsa-mir-489" "hsa-mir-494"
## [65] "hsa-mir-495" "hsa-mir-496" "hsa-mir-499" "hsa-mir-516a-1"
## [69] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-520a" "hsa-mir-525"
## [73] "hsa-mir-539" "hsa-mir-541" "hsa-mir-543" "hsa-mir-548v"
## [77] "hsa-mir-577" "hsa-mir-580" "hsa-mir-607" "hsa-mir-653"
## [81] "hsa-mir-654" "hsa-mir-655" "hsa-mir-656" "hsa-mir-665"
## [85] "hsa-mir-668" "hsa-mir-7-2" "hsa-mir-758" "hsa-mir-770"
## [89] "hsa-mir-876" "hsa-mir-889"
## [1] "bicluster2"
## [1] "FASN.RPPA" "TTF1.RPPA" "MSH6.RPPA" "MYH11.RPPA"
## [5] "TFRC.RPPA" "FASN.R2Gn" "PIK3R1.R2Gn" "BCL2L1.R2Gn"
## [9] "TYMS.R2Gn" "TFRC.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1"
## [13] "hsa-mir-1197" "hsa-mir-124-1" "hsa-mir-124-2" "hsa-mir-124-3"
## [17] "hsa-mir-1247" "hsa-mir-134" "hsa-mir-154" "hsa-mir-3193"
## [21] "hsa-mir-323" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2"
## [25] "hsa-mir-3687" "hsa-mir-370" "hsa-mir-376a-1" "hsa-mir-376a-2"
## [29] "hsa-mir-377" "hsa-mir-380" "hsa-mir-382" "hsa-mir-3912"
## [33] "hsa-mir-3922" "hsa-mir-411" "hsa-mir-485" "hsa-mir-487a"
## [37] "hsa-mir-494" "hsa-mir-516a-1" "hsa-mir-541" "hsa-mir-543"
## [41] "hsa-mir-580" "hsa-mir-655" "hsa-mir-656" "hsa-mir-668"
## [45] "hsa-mir-670" "hsa-mir-770" "hsa-mir-873" "hsa-mir-876"
## [49] "hsa-mir-937"
## [1] "bicluster13"
## [1] "ASNS.RPPA" "FASN.RPPA" "IGFBP2.R2Gn" "FN1.R2Gn"
## [5] "AKT2.R2Gn" "EEF2.R2Gn" "RPS6.R2Gn" "JUN.R2Gn"
## [9] "COL6A1.R2Gn" "ANXA1.R2Gn" "HSPA1A.R2Gn" "SYP.R2Gn"
## [13] "hsa-mir-1193" "hsa-mir-124-2" "hsa-mir-124-3" "hsa-mir-146b"
## [17] "hsa-mir-202" "hsa-mir-31" "hsa-mir-3682" "hsa-mir-412"
## [21] "hsa-mir-466" "hsa-mir-490" "hsa-mir-510" "hsa-mir-516a-2"
## [25] "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-518f" "hsa-mir-519a-2"
## [29] "hsa-mir-544" "hsa-mir-552" "hsa-mir-582" "hsa-mir-605"
## [33] "hsa-mir-653" "hsa-mir-656" "hsa-mir-891a"
## [1] "bicluster29"
## [1] "PEA15.RPPA" "TFRC.RPPA" "PREX1.RPPA" "ERBB3.R2Gn"
## [5] "CDH2.R2Gn" "PEA15.R2Gn" "ITGA2.R2Gn" "ADAR.R2Gn"
## [9] "FASN.R2Gn" "YWHAE.R2Gn" "CTNNB1.R2Gn" "PRKCA.R2Gn"
## [13] "CCND1.R2Gn" "PIK3R2.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn"
## [17] "PREX1.R2Gn" "hsa-mir-100" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [21] "hsa-mir-1197" "hsa-mir-1258" "hsa-mir-1270-2" "hsa-mir-135a-1"
## [25] "hsa-mir-139" "hsa-mir-196b" "hsa-mir-206" "hsa-mir-3166"
## [29] "hsa-mir-3170" "hsa-mir-3199-1" "hsa-mir-323" "hsa-mir-323b"
## [33] "hsa-mir-329-1" "hsa-mir-335" "hsa-mir-338" "hsa-mir-3678"
## [37] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376c" "hsa-mir-411"
## [41] "hsa-mir-433" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-488"
## [45] "hsa-mir-496" "hsa-mir-517a" "hsa-mir-541" "hsa-mir-543"
## [49] "hsa-mir-656" "hsa-mir-668" "hsa-mir-873" "hsa-mir-876"
## [53] "hsa-mir-940"
## [1] "bicluster10"
## [1] "G6PD.RPPA" "ATM.RPPA" "FASN.RPPA" "TSC1.RPPA"
## [5] "GAPDH.RPPA" "MSH6.RPPA" "PDK1.RPPA" "TFRC.RPPA"
## [9] "PREX1.RPPA" "MAPK14.R2Gn" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [13] "FN1.R2Gn" "CDH2.R2Gn" "RB1.R2Gn" "MAPK9.R2Gn"
## [17] "XRCC5.R2Gn" "FASN.R2Gn" "CTNNB1.R2Gn" "PIK3R1.R2Gn"
## [21] "GAPDH.R2Gn" "TUBA1B.R2Gn" "XIAP.R2Gn" "TFRC.R2Gn"
## [25] "PARP1.R2Gn" "hsa-mir-1224" "hsa-mir-1269" "hsa-mir-129-2"
## [29] "hsa-mir-135b" "hsa-mir-138-1" "hsa-mir-139" "hsa-mir-2114"
## [33] "hsa-mir-218-1" "hsa-mir-29c" "hsa-mir-320c-2" "hsa-mir-329-2"
## [37] "hsa-mir-3655" "hsa-mir-3922" "hsa-mir-3923" "hsa-mir-3926-2"
## [41] "hsa-mir-3940" "hsa-mir-466" "hsa-mir-490" "hsa-mir-506"
## [45] "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2"
## [49] "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [53] "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2"
## [57] "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-585" "hsa-mir-605"
## [61] "hsa-mir-664" "hsa-mir-665" "hsa-mir-767" "hsa-mir-876"
## [1] "bicluster7"
## [1] "G6PD.RPPA" "GATA3.RPPA" "ATM.RPPA" "EGFR.RPPA"
## [5] "TSC1.RPPA" "GAPDH.RPPA" "TFRC.RPPA" "ERBB3.R2Gn"
## [9] "FN1.R2Gn" "TGM2.R2Gn" "CCND1.R2Gn" "GAPDH.R2Gn"
## [13] "MYH9.R2Gn" "SYP.R2Gn" "PARP1.R2Gn" "SNAI2.R2Gn"
## [17] "hsa-mir-1185-1" "hsa-mir-1226" "hsa-mir-1269" "hsa-mir-1293"
## [21] "hsa-mir-184" "hsa-mir-2114" "hsa-mir-29c" "hsa-mir-30c-1"
## [25] "hsa-mir-3130-1" "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-3662"
## [29] "hsa-mir-3922" "hsa-mir-3923" "hsa-mir-411" "hsa-mir-429"
## [33] "hsa-mir-485" "hsa-mir-494" "hsa-mir-506" "hsa-mir-507"
## [37] "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3"
## [41] "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"
## [45] "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [49] "hsa-mir-514b" "hsa-mir-543" "hsa-mir-548v" "hsa-mir-577"
## [53] "hsa-mir-582" "hsa-mir-655" "hsa-mir-937" "hsa-mir-939"
## [1] "bicluster34"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "FASN.RPPA" "PDCD4.RPPA"
## [5] "MSH6.RPPA" "MSH2.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [9] "RPS6KA1.R2Gn" "ADAR.R2Gn" "EEF2.R2Gn" "CTNNB1.R2Gn"
## [13] "CCND1.R2Gn" "GAPDH.R2Gn" "RPTOR.R2Gn" "SQSTM1.R2Gn"
## [17] "hsa-mir-124-1" "hsa-mir-124-3" "hsa-mir-1248" "hsa-mir-1251"
## [21] "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-135b"
## [25] "hsa-mir-187" "hsa-mir-200b" "hsa-mir-218-2" "hsa-mir-296"
## [29] "hsa-mir-3065" "hsa-mir-3130-1" "hsa-mir-3166" "hsa-mir-3687"
## [33] "hsa-mir-3690" "hsa-mir-411" "hsa-mir-488" "hsa-mir-510"
## [37] "hsa-mir-511-2" "hsa-mir-513a-2" "hsa-mir-518b" "hsa-mir-552"
## [41] "hsa-mir-605" "hsa-mir-607" "hsa-mir-655" "hsa-mir-887"
## [45] "hsa-mir-940"
## [1] "bicluster31"
## [1] "G6PD.RPPA" "ATM.RPPA" "EGFR.RPPA" "GAPDH.RPPA"
## [5] "MYH11.RPPA" "ERBB3.R2Gn" "GAPDH.R2Gn" "HSPA1A.R2Gn"
## [9] "hsa-mir-1185-1" "hsa-mir-1197" "hsa-mir-1249" "hsa-mir-1293"
## [13] "hsa-mir-200b" "hsa-mir-329-2" "hsa-mir-33b" "hsa-mir-433"
## [17] "hsa-mir-490" "hsa-mir-516a-1" "hsa-mir-544" "hsa-mir-585"
## [21] "hsa-mir-605" "hsa-mir-656"
## [1] "bicluster27"
## [1] "GATA3.RPPA" "GAPDH.RPPA" "ERBB3.R2Gn" "FN1.R2Gn"
## [5] "CDH2.R2Gn" "SERPINE1.R2Gn" "CTNNB1.R2Gn" "TGM2.R2Gn"
## [9] "CCND1.R2Gn" "PRDX1.R2Gn" "PDK1.R2Gn" "NDRG1.R2Gn"
## [13] "HSPA1A.R2Gn" "SYP.R2Gn" "PARP1.R2Gn" "CHGA.R2Gn"
## [17] "hsa-mir-1255a" "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-133b"
## [21] "hsa-mir-184" "hsa-mir-205" "hsa-mir-296" "hsa-mir-329-2"
## [25] "hsa-mir-3928" "hsa-mir-3934" "hsa-mir-483" "hsa-mir-499"
## [29] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [33] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510" "hsa-mir-513a-1"
## [37] "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c" "hsa-mir-514-1"
## [41] "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b" "hsa-mir-516a-1"
## [45] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-519a-2" "hsa-mir-525"
## [49] "hsa-mir-767"
## [1] "bicluster15"
## [1] "G6PD.RPPA" "PTEN.RPPA" "INPP4B.RPPA" "PDCD4.RPPA"
## [5] "TTF1.RPPA" "VHL.RPPA" "PRDX1.RPPA" "XBP1.RPPA"
## [9] "TGM2.R2Gn" "ANXA1.R2Gn" "SQSTM1.R2Gn" "hsa-mir-122"
## [13] "hsa-mir-1258" "hsa-mir-153-1" "hsa-mir-2114" "hsa-mir-218-1"
## [17] "hsa-mir-3173" "hsa-mir-320c-2" "hsa-mir-3610" "hsa-mir-3940"
## [21] "hsa-mir-466" "hsa-mir-489" "hsa-mir-507" "hsa-mir-551b"
## [25] "hsa-mir-552" "hsa-mir-570" "hsa-mir-653" "hsa-mir-656"
## [29] "hsa-mir-665" "hsa-mir-7-2" "hsa-mir-765" "hsa-mir-770"
## [33] "hsa-mir-876" "hsa-mir-95"
## [1] "bicluster25"
## [1] "IGFBP2.RPPA" "AR.RPPA" "GAPDH.RPPA" "IGFBP2.R2Gn"
## [5] "PRRT2.R2Gn" "GAPDH.R2Gn" "ANXA1.R2Gn" "ERRFI1.R2Gn"
## [9] "hsa-mir-1269" "hsa-mir-190b" "hsa-mir-196b" "hsa-mir-301b"
## [13] "hsa-mir-3187" "hsa-mir-320c-1" "hsa-mir-3610" "hsa-mir-3620"
## [17] "hsa-mir-3940" "hsa-mir-517a" "hsa-mir-580" "hsa-mir-656"
## [21] "hsa-mir-873" "hsa-mir-876" "hsa-mir-891a"
## [1] "bicluster22"
## [1] "GATA3.RPPA" "ATM.RPPA" "AR.RPPA" "ERBB3.R2Gn"
## [5] "PEA15.R2Gn" "ADAR.R2Gn" "CTNNB1.R2Gn" "SHC1.R2Gn"
## [9] "TGM2.R2Gn" "GAPDH.R2Gn" "hsa-mir-105-1" "hsa-mir-133b"
## [13] "hsa-mir-135b" "hsa-mir-200a" "hsa-mir-206" "hsa-mir-3166"
## [17] "hsa-mir-320c-2" "hsa-mir-3678" "hsa-mir-3922" "hsa-mir-3926-2"
## [21] "hsa-mir-429" "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-510"
## [25] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"
## [29] "hsa-mir-518b" "hsa-mir-518f" "hsa-mir-519a-2" "hsa-mir-520a"
## [33] "hsa-mir-525" "hsa-mir-548s" "hsa-mir-579" "hsa-mir-605"
## [37] "hsa-mir-7-2" "hsa-mir-767"
## [1] "bicluster1"
## [1] "BRCA2.RPPA" "FASN.RPPA" "ERBB3.R2Gn" "FN1.R2Gn"
## [5] "GAPDH.R2Gn" "hsa-mir-105-1" "hsa-mir-106a" "hsa-mir-124-3"
## [9] "hsa-mir-135a-2" "hsa-mir-34b" "hsa-mir-380" "hsa-mir-411"
## [13] "hsa-mir-485" "hsa-mir-487a" "hsa-mir-511-1" "hsa-mir-541"
## [17] "hsa-mir-580" "hsa-mir-655" "hsa-mir-770"
## [1] "bicluster28"
## [1] "TFRC.RPPA" "ERBB3.R2Gn" "GATA3.R2Gn" "CCND1.R2Gn"
## [5] "XBP1.R2Gn" "GAPDH.R2Gn" "TFRC.R2Gn" "HSPA1A.R2Gn"
## [9] "ERRFI1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1249" "hsa-mir-1269"
## [13] "hsa-mir-135a-1" "hsa-mir-138-1" "hsa-mir-138-2" "hsa-mir-187"
## [17] "hsa-mir-196a-2" "hsa-mir-216b" "hsa-mir-346" "hsa-mir-34b"
## [21] "hsa-mir-380" "hsa-mir-433" "hsa-mir-485" "hsa-mir-488"
## [25] "hsa-mir-541" "hsa-mir-543" "hsa-mir-636" "hsa-mir-9-3"
## [1] "bicluster12"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "TTF1.RPPA" "GAPDH.RPPA"
## [5] "MSH6.RPPA" "TFRC.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [9] "SNAI2.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1185-2"
## [13] "hsa-mir-1262" "hsa-mir-1269" "hsa-mir-129-2" "hsa-mir-2114"
## [17] "hsa-mir-29b-2" "hsa-mir-29c" "hsa-mir-31" "hsa-mir-320c-2"
## [21] "hsa-mir-34b" "hsa-mir-3923" "hsa-mir-411" "hsa-mir-429"
## [25] "hsa-mir-487a" "hsa-mir-510" "hsa-mir-548q" "hsa-mir-655"
## [29] "hsa-mir-891a" "hsa-mir-937"
## [1] "bicluster20"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [5] "FN1.R2Gn" "EIF4G1.R2Gn" "ADAR.R2Gn" "STMN1.R2Gn"
## [9] "CDK1.R2Gn" "CTNNA1.R2Gn" "TYMS.R2Gn" "TUBA1B.R2Gn"
## [13] "FOXM1.R2Gn" "COL6A1.R2Gn" "hsa-mir-1247" "hsa-mir-138-1"
## [17] "hsa-mir-138-2" "hsa-mir-372" "hsa-mir-3923" "hsa-mir-3926-1"
## [21] "hsa-mir-507"
## [1] "bicluster11"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "EGFR.RPPA" "MSH6.RPPA"
## [5] "G6PD.R2Gn" "ERBB3.R2Gn" "FN1.R2Gn" "TGM2.R2Gn"
## [9] "CCND1.R2Gn" "COL6A1.R2Gn" "HSPA1A.R2Gn" "hsa-mir-1185-1"
## [13] "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-206"
## [17] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-376a-2" "hsa-mir-377"
## [21] "hsa-mir-380" "hsa-mir-411" "hsa-mir-466" "hsa-mir-485"
## [25] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-516a-1" "hsa-mir-516a-2"
## [29] "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-525" "hsa-mir-543"
## [33] "hsa-mir-655" "hsa-mir-656" "hsa-mir-876" "hsa-mir-889"
## [1] "bicluster14"
## [1] "G6PD.RPPA" "FASN.RPPA" "NF2.RPPA" "ERBB3.R2Gn"
## [5] "FN1.R2Gn" "FASN.R2Gn" "CTNNB1.R2Gn" "FOXO3.R2Gn"
## [9] "BCL2.R2Gn" "CCND1.R2Gn" "XBP1.R2Gn" "GAPDH.R2Gn"
## [13] "COL6A1.R2Gn" "HSPA1A.R2Gn" "SYP.R2Gn" "hsa-mir-105-2"
## [17] "hsa-mir-1269" "hsa-mir-200a" "hsa-mir-200b" "hsa-mir-26a-1"
## [21] "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-329-1" "hsa-mir-3926-1"
## [25] "hsa-mir-433" "hsa-mir-488" "hsa-mir-511-2" "hsa-mir-516a-1"
## [29] "hsa-mir-517a" "hsa-mir-520a" "hsa-mir-526b" "hsa-mir-548q"
## [33] "hsa-mir-9-3"
## [1] "bicluster17"
## [1] "PEA15.RPPA" "EGFR.RPPA" "TSC1.RPPA" "TTF1.RPPA"
## [5] "VHL.RPPA" "GAPDH.RPPA" "ERBB3.R2Gn" "PEA15.R2Gn"
## [9] "ADAR.R2Gn" "SERPINE1.R2Gn" "CTNNB1.R2Gn" "SHC1.R2Gn"
## [13] "CCND1.R2Gn" "GAPDH.R2Gn" "hsa-mir-1249" "hsa-mir-1255a"
## [17] "hsa-mir-1292" "hsa-mir-138-2" "hsa-mir-218-1" "hsa-mir-3190"
## [21] "hsa-mir-4326" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [25] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [29] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b" "hsa-mir-513c"
## [33] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-514b"
## [37] "hsa-mir-659" "hsa-mir-760" "hsa-mir-876"
## [1] "bicluster33"
## [1] "IGFBP2.R2Gn" "FN1.R2Gn" "HSPA1A.R2Gn" "hsa-mir-1249"
## [5] "hsa-mir-196a-2" "hsa-mir-216b" "hsa-mir-3173" "hsa-mir-3678"
## [9] "hsa-mir-383" "hsa-mir-516a-2" "hsa-mir-517a" "hsa-mir-615"
## [13] "hsa-mir-656" "hsa-mir-876"
## [1] "bicluster5"
## [1] "G6PD.RPPA" "ASNS.RPPA" "RBM15.RPPA" "PEA15.RPPA"
## [5] "ATM.RPPA" "EGFR.RPPA" "TSC1.RPPA" "GAPDH.RPPA"
## [9] "NF2.RPPA" "CDH2.R2Gn" "PEA15.R2Gn" "ADAR.R2Gn"
## [13] "SHC1.R2Gn" "GAPDH.R2Gn" "SYP.R2Gn" "hsa-mir-1255a"
## [17] "hsa-mir-1305" "hsa-mir-200a" "hsa-mir-200b" "hsa-mir-206"
## [21] "hsa-mir-218-1" "hsa-mir-296" "hsa-mir-3610" "hsa-mir-3687"
## [25] "hsa-mir-3909" "hsa-mir-3926-1" "hsa-mir-3940" "hsa-mir-429"
## [29] "hsa-mir-548q" "hsa-mir-552" "hsa-mir-580"
## [1] "bicluster18"
## [1] "PEA15.RPPA" "ERBB3.R2Gn" "CDH2.R2Gn" "GATA3.R2Gn"
## [5] "ADAR.R2Gn" "EEF2.R2Gn" "CTNNB1.R2Gn" "RPS6.R2Gn"
## [9] "TGM2.R2Gn" "GAPDH.R2Gn" "TFRC.R2Gn" "PARP1.R2Gn"
## [13] "hsa-mir-1269" "hsa-mir-3922" "hsa-mir-507" "hsa-mir-510"
## [17] "hsa-mir-514b" "hsa-mir-516a-1" "hsa-mir-518b"
## [1] "bicluster26"
## [1] "G6PD.RPPA" "EGFR.RPPA" "TFRC.RPPA" "ERBB3.R2Gn"
## [5] "FN1.R2Gn" "PIK3R1.R2Gn" "TFRC.R2Gn" "ERRFI1.R2Gn"
## [9] "hsa-mir-1185-1" "hsa-mir-124-1" "hsa-mir-216b" "hsa-mir-224"
## [13] "hsa-mir-296" "hsa-mir-3130-1" "hsa-mir-3170" "hsa-mir-3199-1"
## [17] "hsa-mir-320c-2" "hsa-mir-3662" "hsa-mir-3923" "hsa-mir-452"
## [21] "hsa-mir-487a" "hsa-mir-488" "hsa-mir-494" "hsa-mir-516a-1"
## [25] "hsa-mir-548q" "hsa-mir-577" "hsa-mir-580" "hsa-mir-656"
## [1] "bicluster3"
## [1] "IGFBP2.RPPA" "PDCD4.RPPA" "ERBB3.R2Gn" "FN1.R2Gn"
## [5] "ADAR.R2Gn" "SERPINE1.R2Gn" "PIK3R1.R2Gn" "MYH9.R2Gn"
## [9] "PARP1.R2Gn" "hsa-mir-1248" "hsa-mir-129-2" "hsa-mir-1292"
## [13] "hsa-mir-182" "hsa-mir-183" "hsa-mir-187" "hsa-mir-516a-1"
## [17] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [21] "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a" "hsa-mir-525"
## [25] "hsa-mir-526b" "hsa-mir-570" "hsa-mir-636" "hsa-mir-7-2"
## [29] "hsa-mir-760" "hsa-mir-765" "hsa-mir-96"
## [1] "bicluster23"
## [1] "PTEN.RPPA" "EGFR.RPPA" "ERCC1.RPPA" "EGFR.R2Gn"
## [5] "PIK3R1.R2Gn" "hsa-mir-1251" "hsa-mir-1269" "hsa-mir-135a-1"
## [9] "hsa-mir-30c-1" "hsa-mir-3687" "hsa-mir-767"
## [1] "bicluster4"
## [1] "FASN.RPPA" "MSH6.RPPA" "IGFBP2.R2Gn" "FASN.R2Gn"
## [5] "CCND1.R2Gn" "PIK3R2.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1249"
## [9] "hsa-mir-135b" "hsa-mir-2114" "hsa-mir-218-1" "hsa-mir-34b"
## [13] "hsa-mir-3614" "hsa-mir-3923" "hsa-mir-511-1" "hsa-mir-511-2"
## [17] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-627"
## [1] "bicluster8"
## [1] "PEA15.RPPA" "ATM.RPPA" "MYH11.RPPA" "TFRC.RPPA"
## [5] "KDR.R2Gn" "ERBB3.R2Gn" "FN1.R2Gn" "AKT2.R2Gn"
## [9] "CDH2.R2Gn" "SERPINE1.R2Gn" "hsa-mir-1270-1" "hsa-mir-135b"
## [13] "hsa-mir-184" "hsa-mir-30c-1" "hsa-mir-3170" "hsa-mir-765"
## [1] "bicluster6"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "MSH6.RPPA" "IGFBP2.R2Gn"
## [5] "FN1.R2Gn" "SERPINE1.R2Gn" "NDRG1.R2Gn" "HSPA1A.R2Gn"
## [9] "hsa-mir-1228" "hsa-mir-138-1" "hsa-mir-30c-1" "hsa-mir-3144"
## [13] "hsa-mir-760" "hsa-mir-876"
## [1] "bicluster35"
## [1] "IGFBP2.RPPA" "PDCD4.RPPA" "GAPDH.RPPA" "IGFBP2.R2Gn"
## [5] "hsa-mir-105-1" "hsa-mir-488" "hsa-mir-516b-1" "hsa-mir-517a"
## [9] "hsa-mir-937"
## [1] "bicluster32"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "DIRAS3.R2Gn" "ERBB3.R2Gn"
## [5] "IGFBP2.R2Gn" "CTNNB1.R2Gn" "RPS6.R2Gn" "HSPA1A.R2Gn"
## [9] "IDH3A.R2Gn" "hsa-mir-105-1" "hsa-mir-122" "hsa-mir-1269"
## [13] "hsa-mir-183" "hsa-mir-510" "hsa-mir-525" "hsa-mir-570"
## [17] "hsa-mir-7-2"
## [1] "bicluster30"
## [1] "INPP4B.RPPA" "PRDX1.RPPA" "TFRC.RPPA" "ADAR.R2Gn"
## [5] "SYP.R2Gn" "SQSTM1.R2Gn" "hsa-mir-138-1"f43_bic = select.by.Bic(fabia_43)## [1] "bicluster41"
## [1] "G6PD.RPPA" "ASNS.RPPA" "RBM15.RPPA" "PTEN.RPPA"
## [5] "GATA3.RPPA" "ATM.RPPA" "BRCA2.RPPA" "FASN.RPPA"
## [9] "INPP4B.RPPA" "PCNA.RPPA" "ACVRL1.RPPA" "PDCD4.RPPA"
## [13] "CDK1.RPPA" "VHL.RPPA" "PRDX1.RPPA" "XBP1.RPPA"
## [17] "MSH6.RPPA" "ERCC1.RPPA" "PREX1.RPPA" "AKT1.R2Gn"
## [21] "ADAR.R2Gn" "EEF2.R2Gn" "PRKCA.R2Gn" "TGM2.R2Gn"
## [25] "CTNNA1.R2Gn" "GAPDH.R2Gn" "STAT5A.R2Gn" "ANXA1.R2Gn"
## [29] "TFRC.R2Gn" "PXN.R2Gn" "SQSTM1.R2Gn" "hsa-mir-1185-1"
## [33] "hsa-mir-1185-2" "hsa-mir-1193" "hsa-mir-1197" "hsa-mir-1258"
## [37] "hsa-mir-1269" "hsa-mir-127" "hsa-mir-134" "hsa-mir-136"
## [41] "hsa-mir-137" "hsa-mir-138-1" "hsa-mir-138-2" "hsa-mir-142"
## [45] "hsa-mir-146a" "hsa-mir-153-1" "hsa-mir-154" "hsa-mir-155"
## [49] "hsa-mir-196a-1" "hsa-mir-196b" "hsa-mir-200b" "hsa-mir-206"
## [53] "hsa-mir-216b" "hsa-mir-217" "hsa-mir-218-1" "hsa-mir-223"
## [57] "hsa-mir-299" "hsa-mir-301b" "hsa-mir-31" "hsa-mir-3170"
## [61] "hsa-mir-3173" "hsa-mir-3199-1" "hsa-mir-320c-1" "hsa-mir-323"
## [65] "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-329-2" "hsa-mir-337"
## [69] "hsa-mir-3607" "hsa-mir-3610" "hsa-mir-3614" "hsa-mir-362"
## [73] "hsa-mir-3687" "hsa-mir-369" "hsa-mir-370" "hsa-mir-376a-1"
## [77] "hsa-mir-376a-2" "hsa-mir-376b" "hsa-mir-376c" "hsa-mir-377"
## [81] "hsa-mir-379" "hsa-mir-380" "hsa-mir-381" "hsa-mir-382"
## [85] "hsa-mir-3926-1" "hsa-mir-3940" "hsa-mir-409" "hsa-mir-410"
## [89] "hsa-mir-411" "hsa-mir-431" "hsa-mir-432" "hsa-mir-433"
## [93] "hsa-mir-455" "hsa-mir-466" "hsa-mir-485" "hsa-mir-487a"
## [97] "hsa-mir-487b" "hsa-mir-489" "hsa-mir-494" "hsa-mir-495"
## [101] "hsa-mir-496" "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [105] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a" "hsa-mir-518b"
## [109] "hsa-mir-518f" "hsa-mir-519a-2" "hsa-mir-539" "hsa-mir-541"
## [113] "hsa-mir-543" "hsa-mir-544" "hsa-mir-551b" "hsa-mir-552"
## [117] "hsa-mir-577" "hsa-mir-579" "hsa-mir-582" "hsa-mir-605"
## [121] "hsa-mir-607" "hsa-mir-653" "hsa-mir-654" "hsa-mir-655"
## [125] "hsa-mir-656" "hsa-mir-665" "hsa-mir-668" "hsa-mir-758"
## [129] "hsa-mir-770" "hsa-mir-889"
## [1] "bicluster21"
## [1] "RBM15.RPPA" "PEA15.RPPA" "EGFR.RPPA" "FASN.RPPA"
## [5] "TFRC.RPPA" "CDH2.R2Gn" "PEA15.R2Gn" "ADAR.R2Gn"
## [9] "SHC1.R2Gn" "MYH9.R2Gn" "SYP.R2Gn" "hsa-mir-1193"
## [13] "hsa-mir-124-1" "hsa-mir-124-2" "hsa-mir-124-3" "hsa-mir-1258"
## [17] "hsa-mir-1292" "hsa-mir-1304" "hsa-mir-141" "hsa-mir-153-1"
## [21] "hsa-mir-153-2" "hsa-mir-206" "hsa-mir-219-1" "hsa-mir-2277"
## [25] "hsa-mir-26a-1" "hsa-mir-3191" "hsa-mir-3199-1" "hsa-mir-320c-2"
## [29] "hsa-mir-329-2" "hsa-mir-3682" "hsa-mir-383" "hsa-mir-3909"
## [33] "hsa-mir-3923" "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-3934"
## [37] "hsa-mir-466" "hsa-mir-499" "hsa-mir-506" "hsa-mir-507"
## [41] "hsa-mir-508" "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3"
## [45] "hsa-mir-510" "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"
## [49] "hsa-mir-513c" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [53] "hsa-mir-514b" "hsa-mir-516a-1" "hsa-mir-519a-2" "hsa-mir-525"
## [57] "hsa-mir-548s" "hsa-mir-548v" "hsa-mir-550a-2" "hsa-mir-552"
## [61] "hsa-mir-579" "hsa-mir-580" "hsa-mir-581" "hsa-mir-592"
## [65] "hsa-mir-605" "hsa-mir-615" "hsa-mir-765" "hsa-mir-767"
## [69] "hsa-mir-9-3"
## [1] "bicluster19"
## [1] "ASNS.RPPA" "INPP4B.RPPA" "MYH11.RPPA" "ERBB3.R2Gn"
## [5] "FN1.R2Gn" "CTNNB1.R2Gn" "SHC1.R2Gn" "PARK7.R2Gn"
## [9] "TGM2.R2Gn" "HSPA1A.R2Gn" "hsa-mir-1197" "hsa-mir-122"
## [13] "hsa-mir-1293" "hsa-mir-205" "hsa-mir-206" "hsa-mir-30c-1"
## [17] "hsa-mir-3144" "hsa-mir-323b" "hsa-mir-329-1" "hsa-mir-3655"
## [21] "hsa-mir-3682" "hsa-mir-380" "hsa-mir-3926-1" "hsa-mir-3926-2"
## [25] "hsa-mir-411" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-516a-1"
## [29] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b"
## [33] "hsa-mir-518c" "hsa-mir-518f" "hsa-mir-519a-1" "hsa-mir-519a-2"
## [37] "hsa-mir-520a" "hsa-mir-525" "hsa-mir-526b" "hsa-mir-541"
## [41] "hsa-mir-577" "hsa-mir-656" "hsa-mir-668"
## [1] "bicluster38"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "FASN.RPPA" "PDCD4.RPPA"
## [5] "AR.RPPA" "GAPDH.RPPA" "MSH6.RPPA" "MSH2.RPPA"
## [9] "ERBB2.R2Gn" "KDR.R2Gn" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [13] "FASN.R2Gn" "PRKCA.R2Gn" "PIK3R1.R2Gn" "GAPDH.R2Gn"
## [17] "MYH9.R2Gn" "COL6A1.R2Gn" "PIK3R2.R2Gn" "HSPA1A.R2Gn"
## [21] "ERRFI1.R2Gn" "PARP1.R2Gn" "PREX1.R2Gn" "CHGA.R2Gn"
## [25] "hsa-let-7f-1" "hsa-mir-1179" "hsa-mir-1247" "hsa-mir-1287"
## [29] "hsa-mir-1293" "hsa-mir-1305" "hsa-mir-135a-1" "hsa-mir-135b"
## [33] "hsa-mir-187" "hsa-mir-194-1" "hsa-mir-194-2" "hsa-mir-200a"
## [37] "hsa-mir-2114" "hsa-mir-216b" "hsa-mir-224" "hsa-mir-3130-1"
## [41] "hsa-mir-3170" "hsa-mir-3173" "hsa-mir-320c-2" "hsa-mir-329-2"
## [45] "hsa-mir-3652" "hsa-mir-3662" "hsa-mir-3934" "hsa-mir-429"
## [49] "hsa-mir-452" "hsa-mir-488" "hsa-mir-499" "hsa-mir-517a"
## [53] "hsa-mir-518c" "hsa-mir-519a-2" "hsa-mir-548s" "hsa-mir-551b"
## [57] "hsa-mir-577" "hsa-mir-605" "hsa-mir-636" "hsa-mir-873"
## [61] "hsa-mir-876" "hsa-mir-9-3" "hsa-mir-939"
## [1] "bicluster16"
## [1] "GATA3.RPPA" "PDCD4.RPPA" "PREX1.RPPA" "ERBB3.R2Gn"
## [5] "IGFBP2.R2Gn" "SERPINE1.R2Gn" "PRKCA.R2Gn" "GAPDH.R2Gn"
## [9] "HSPA1A.R2Gn" "ERRFI1.R2Gn" "RBM3.R2Gn" "hsa-mir-105-1"
## [13] "hsa-mir-105-2" "hsa-mir-1197" "hsa-mir-1224" "hsa-mir-1270-1"
## [17] "hsa-mir-135a-1" "hsa-mir-194-2" "hsa-mir-200b" "hsa-mir-215"
## [21] "hsa-mir-31" "hsa-mir-335" "hsa-mir-3678" "hsa-mir-3909"
## [25] "hsa-mir-3922" "hsa-mir-412" "hsa-mir-431" "hsa-mir-4326"
## [29] "hsa-mir-466" "hsa-mir-488" "hsa-mir-504" "hsa-mir-510"
## [33] "hsa-mir-541" "hsa-mir-550a-2" "hsa-mir-585" "hsa-mir-607"
## [37] "hsa-mir-656" "hsa-mir-7-2" "hsa-mir-7-3" "hsa-mir-765"
## [41] "hsa-mir-767" "hsa-mir-876"
## [1] "bicluster34"
## [1] "RBM15.RPPA" "PDCD4.RPPA" "MSH6.RPPA" "TFRC.RPPA"
## [5] "MSH2.RPPA" "ERBB3.R2Gn" "RPS6KA1.R2Gn" "ADAR.R2Gn"
## [9] "EEF2.R2Gn" "CTNNB1.R2Gn" "SHC1.R2Gn" "CHGA.R2Gn"
## [13] "hsa-mir-106a" "hsa-mir-124-1" "hsa-mir-124-2" "hsa-mir-124-3"
## [17] "hsa-mir-1248" "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1274b"
## [21] "hsa-mir-135a-2" "hsa-mir-141" "hsa-mir-200b" "hsa-mir-218-2"
## [25] "hsa-mir-296" "hsa-mir-3130-1" "hsa-mir-320c-2" "hsa-mir-34b"
## [29] "hsa-mir-3648" "hsa-mir-3676" "hsa-mir-3687" "hsa-mir-411"
## [33] "hsa-mir-511-2" "hsa-mir-518b" "hsa-mir-552" "hsa-mir-605"
## [37] "hsa-mir-887" "hsa-mir-940"
## [1] "bicluster42"
## [1] "IGFBP2.RPPA" "RBM15.RPPA" "PEA15.RPPA" "EGFR.RPPA"
## [5] "TSC1.RPPA" "PDCD4.RPPA" "TFRC.RPPA" "IGFBP2.R2Gn"
## [9] "CDH2.R2Gn" "CTNNA1.R2Gn" "NOTCH3.R2Gn" "NDRG1.R2Gn"
## [13] "SYP.R2Gn" "RPTOR.R2Gn" "hsa-mir-122" "hsa-mir-1255a"
## [17] "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-129-1" "hsa-mir-153-1"
## [21] "hsa-mir-153-2" "hsa-mir-187" "hsa-mir-29a" "hsa-mir-3166"
## [25] "hsa-mir-3173" "hsa-mir-320c-2" "hsa-mir-346" "hsa-mir-3651"
## [29] "hsa-mir-3662" "hsa-mir-3676" "hsa-mir-552" "hsa-mir-570"
## [33] "hsa-mir-642a" "hsa-mir-766" "hsa-mir-876" "hsa-mir-885"
## [37] "hsa-mir-935" "hsa-mir-937" "hsa-mir-95"
## [1] "bicluster22"
## [1] "GATA3.RPPA" "ATM.RPPA" "AR.RPPA" "ERBB3.R2Gn"
## [5] "PEA15.R2Gn" "ADAR.R2Gn" "EEF2.R2Gn" "SERPINE1.R2Gn"
## [9] "SHC1.R2Gn" "GAPDH.R2Gn" "hsa-mir-105-1" "hsa-mir-105-2"
## [13] "hsa-mir-133b" "hsa-mir-135b" "hsa-mir-137" "hsa-mir-200a"
## [17] "hsa-mir-206" "hsa-mir-3166" "hsa-mir-3191" "hsa-mir-3678"
## [21] "hsa-mir-3922" "hsa-mir-429" "hsa-mir-516a-1" "hsa-mir-516a-2"
## [25] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-518f"
## [29] "hsa-mir-519a-2" "hsa-mir-520a" "hsa-mir-525" "hsa-mir-548s"
## [33] "hsa-mir-579" "hsa-mir-605" "hsa-mir-7-2" "hsa-mir-708"
## [37] "hsa-mir-767" "hsa-mir-891a" "hsa-mir-935"
## [1] "bicluster25"
## [1] "IGFBP2.RPPA" "PTEN.RPPA" "AR.RPPA" "GAPDH.RPPA"
## [5] "IGFBP2.R2Gn" "ITGA2.R2Gn" "CTNNB1.R2Gn" "BCL2L1.R2Gn"
## [9] "GAPDH.R2Gn" "ERRFI1.R2Gn" "hsa-mir-1262" "hsa-mir-190b"
## [13] "hsa-mir-196b" "hsa-mir-296" "hsa-mir-301b" "hsa-mir-3187"
## [17] "hsa-mir-320c-1" "hsa-mir-329-2" "hsa-mir-3610" "hsa-mir-3620"
## [21] "hsa-mir-3928" "hsa-mir-3940" "hsa-mir-483" "hsa-mir-503"
## [25] "hsa-mir-516a-1" "hsa-mir-517a" "hsa-mir-518c" "hsa-mir-548q"
## [29] "hsa-mir-580" "hsa-mir-7-3" "hsa-mir-765" "hsa-mir-873"
## [33] "hsa-mir-876" "hsa-mir-891a" "hsa-mir-937"
## [1] "bicluster10"
## [1] "PEA15.RPPA" "ATM.RPPA" "EGFR.RPPA" "FASN.RPPA"
## [5] "TSC1.RPPA" "GAPDH.RPPA" "TFRC.RPPA" "CDH2.R2Gn"
## [9] "XRCC5.R2Gn" "FASN.R2Gn" "EEF2.R2Gn" "CTNNB1.R2Gn"
## [13] "PIK3R1.R2Gn" "GAPDH.R2Gn" "TUBA1B.R2Gn" "TFRC.R2Gn"
## [17] "PARP1.R2Gn" "hsa-mir-1228" "hsa-mir-1269" "hsa-mir-129-2"
## [21] "hsa-mir-205" "hsa-mir-218-1" "hsa-mir-3173" "hsa-mir-3651"
## [25] "hsa-mir-3655" "hsa-mir-3922" "hsa-mir-3923" "hsa-mir-3926-2"
## [29] "hsa-mir-490" "hsa-mir-506" "hsa-mir-507" "hsa-mir-508"
## [33] "hsa-mir-509-1" "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-510"
## [37] "hsa-mir-513a-2" "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3"
## [41] "hsa-mir-585" "hsa-mir-767" "hsa-mir-876"
## [1] "bicluster2"
## [1] "GATA3.RPPA" "TTF1.RPPA" "MYH11.RPPA" "TFRC.RPPA"
## [5] "SRC.R2Gn" "CTNNB1.R2Gn" "PIK3R1.R2Gn" "BCL2L1.R2Gn"
## [9] "TFRC.R2Gn" "SQSTM1.R2Gn" "hsa-let-7f-1" "hsa-mir-1-2"
## [13] "hsa-mir-1185-1" "hsa-mir-1228" "hsa-mir-124-1" "hsa-mir-124-2"
## [17] "hsa-mir-124-3" "hsa-mir-301b" "hsa-mir-3193" "hsa-mir-3199-1"
## [21] "hsa-mir-329-2" "hsa-mir-3610" "hsa-mir-376a-2" "hsa-mir-377"
## [25] "hsa-mir-380" "hsa-mir-3912" "hsa-mir-3922" "hsa-mir-411"
## [29] "hsa-mir-487a" "hsa-mir-494" "hsa-mir-516a-1" "hsa-mir-519a-2"
## [33] "hsa-mir-541" "hsa-mir-561" "hsa-mir-570" "hsa-mir-580"
## [37] "hsa-mir-585" "hsa-mir-655" "hsa-mir-656" "hsa-mir-663"
## [41] "hsa-mir-7-2" "hsa-mir-765" "hsa-mir-767" "hsa-mir-770"
## [45] "hsa-mir-873" "hsa-mir-876" "hsa-mir-937"
## [1] "bicluster13"
## [1] "ASNS.RPPA" "GATA3.RPPA" "FN1.R2Gn" "EEF2.R2Gn"
## [5] "RPS6.R2Gn" "JUN.R2Gn" "CCND1.R2Gn" "COL6A1.R2Gn"
## [9] "ANXA1.R2Gn" "HSPA1A.R2Gn" "SYP.R2Gn" "hsa-mir-1193"
## [13] "hsa-mir-124-3" "hsa-mir-202" "hsa-mir-206" "hsa-mir-31"
## [17] "hsa-mir-320c-2" "hsa-mir-34b" "hsa-mir-3682" "hsa-mir-383"
## [21] "hsa-mir-466" "hsa-mir-490" "hsa-mir-511-1" "hsa-mir-517a"
## [25] "hsa-mir-518f" "hsa-mir-519a-2" "hsa-mir-582" "hsa-mir-592"
## [29] "hsa-mir-618" "hsa-mir-891a" "hsa-mir-937"
## [1] "bicluster29"
## [1] "PEA15.RPPA" "EGFR.RPPA" "FASN.RPPA" "TTF1.RPPA"
## [5] "TFRC.RPPA" "PREX1.RPPA" "ERBB3.R2Gn" "ITGA2.R2Gn"
## [9] "FASN.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn" "PIK3R2.R2Gn"
## [13] "HSPA1A.R2Gn" "hsa-mir-1185-1" "hsa-mir-1258" "hsa-mir-135a-1"
## [17] "hsa-mir-139" "hsa-mir-187" "hsa-mir-196b" "hsa-mir-206"
## [21] "hsa-mir-3166" "hsa-mir-3170" "hsa-mir-3199-1" "hsa-mir-320c-2"
## [25] "hsa-mir-335" "hsa-mir-3678" "hsa-mir-433" "hsa-mir-487a"
## [29] "hsa-mir-488" "hsa-mir-517a" "hsa-mir-525" "hsa-mir-541"
## [33] "hsa-mir-668" "hsa-mir-7-3" "hsa-mir-876" "hsa-mir-940"
## [1] "bicluster7"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "GATA3.RPPA" "ATM.RPPA"
## [5] "EGFR.RPPA" "GAPDH.RPPA" "PDK1.RPPA" "TFRC.RPPA"
## [9] "G6PD.R2Gn" "ERBB3.R2Gn" "FN1.R2Gn" "SERPINE1.R2Gn"
## [13] "CCND1.R2Gn" "GAPDH.R2Gn" "SYP.R2Gn" "hsa-mir-105-1"
## [17] "hsa-mir-1185-1" "hsa-mir-1226" "hsa-mir-1254" "hsa-mir-1293"
## [21] "hsa-mir-149" "hsa-mir-184" "hsa-mir-2114" "hsa-mir-30c-1"
## [25] "hsa-mir-3130-1" "hsa-mir-3662" "hsa-mir-3922" "hsa-mir-510"
## [29] "hsa-mir-518b" "hsa-mir-548v" "hsa-mir-582"
## [1] "bicluster31"
## [1] "G6PD.RPPA" "ATM.RPPA" "EGFR.RPPA" "GAPDH.RPPA"
## [5] "MYH11.RPPA" "ERBB3.R2Gn" "CDKN1A.R2Gn" "YBX1.R2Gn"
## [9] "RPS6.R2Gn" "GAPDH.R2Gn" "HSPA1A.R2Gn" "hsa-mir-1249"
## [13] "hsa-mir-135a-1" "hsa-mir-200a" "hsa-mir-200b" "hsa-mir-3130-1"
## [17] "hsa-mir-3199-1" "hsa-mir-33b" "hsa-mir-3610" "hsa-mir-3682"
## [21] "hsa-mir-516a-1" "hsa-mir-525" "hsa-mir-550a-2" "hsa-mir-580"
## [25] "hsa-mir-585" "hsa-mir-624" "hsa-mir-7-3"
## [1] "bicluster43"
## [1] "PTEN.RPPA" "FASN.RPPA" "PDCD4.RPPA" "MSH6.RPPA"
## [5] "MSH2.RPPA" "KDR.R2Gn" "ERBB3.R2Gn" "AKT2.R2Gn"
## [9] "FASN.R2Gn" "EEF2.R2Gn" "BCL2L1.R2Gn" "RET.R2Gn"
## [13] "hsa-mir-1269" "hsa-mir-129-1" "hsa-mir-129-2" "hsa-mir-1291"
## [17] "hsa-mir-138-2" "hsa-mir-190b" "hsa-mir-196a-2" "hsa-mir-200a"
## [21] "hsa-mir-2114" "hsa-mir-31" "hsa-mir-3170" "hsa-mir-3191"
## [25] "hsa-mir-3193" "hsa-mir-320c-2" "hsa-mir-3610" "hsa-mir-3687"
## [29] "hsa-mir-3909" "hsa-mir-3923" "hsa-mir-4326" "hsa-mir-466"
## [33] "hsa-mir-488" "hsa-mir-510" "hsa-mir-519a-2" "hsa-mir-548q"
## [37] "hsa-mir-552" "hsa-mir-585" "hsa-mir-607" "hsa-mir-615"
## [41] "hsa-mir-636" "hsa-mir-7-2" "hsa-mir-873" "hsa-mir-876"
## [45] "hsa-mir-95"
## [1] "bicluster27"
## [1] "GATA3.RPPA" "ACVRL1.RPPA" "GAPDH.RPPA" "ERBB3.R2Gn"
## [5] "FN1.R2Gn" "CTNNB1.R2Gn" "CCND1.R2Gn" "NDRG1.R2Gn"
## [9] "HSPA1A.R2Gn" "ERRFI1.R2Gn" "SYP.R2Gn" "PARP1.R2Gn"
## [13] "hsa-mir-1245" "hsa-mir-1255a" "hsa-mir-1270-1" "hsa-mir-1270-2"
## [17] "hsa-mir-133b" "hsa-mir-184" "hsa-mir-29c" "hsa-mir-3934"
## [21] "hsa-mir-483" "hsa-mir-499" "hsa-mir-507" "hsa-mir-510"
## [25] "hsa-mir-511-2" "hsa-mir-513c" "hsa-mir-514b" "hsa-mir-516a-1"
## [29] "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-570" "hsa-mir-580"
## [33] "hsa-mir-675" "hsa-mir-767"
## [1] "bicluster20"
## [1] "IGFBP2.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn"
## [5] "AKT3.R2Gn" "CDKN1A.R2Gn" "EIF4G1.R2Gn" "ADAR.R2Gn"
## [9] "RPS6.R2Gn" "ANLN.R2Gn" "STMN1.R2Gn" "TGM2.R2Gn"
## [13] "CDK1.R2Gn" "CTNNA1.R2Gn" "CAV1.R2Gn" "TYMS.R2Gn"
## [17] "CCNB1.R2Gn" "TUBA1B.R2Gn" "FOXM1.R2Gn" "COL6A1.R2Gn"
## [21] "YWHAB.R2Gn" "EZH2.R2Gn" "CDKN2A.R2Gn" "hsa-mir-1245"
## [25] "hsa-mir-1247" "hsa-mir-138-1" "hsa-mir-138-2" "hsa-mir-216a"
## [29] "hsa-mir-26a-1" "hsa-mir-3190" "hsa-mir-3191" "hsa-mir-3199-1"
## [33] "hsa-mir-372" "hsa-mir-3923" "hsa-mir-3926-1" "hsa-mir-466"
## [37] "hsa-mir-499" "hsa-mir-507" "hsa-mir-876"
## [1] "bicluster37"
## [1] "G6PD.RPPA" "ATM.RPPA" "FASN.RPPA" "TTF1.RPPA"
## [5] "GAPDH.RPPA" "MSH6.RPPA" "PREX1.RPPA" "DIRAS3.R2Gn"
## [9] "FASN.R2Gn" "FOXO3.R2Gn" "GAPDH.R2Gn" "SQSTM1.R2Gn"
## [13] "hsa-mir-1255a" "hsa-mir-1292" "hsa-mir-138-2" "hsa-mir-146a"
## [17] "hsa-mir-196a-2" "hsa-mir-218-1" "hsa-mir-3191" "hsa-mir-3687"
## [21] "hsa-mir-3922" "hsa-mir-4326" "hsa-mir-488" "hsa-mir-489"
## [25] "hsa-mir-499" "hsa-mir-504" "hsa-mir-510" "hsa-mir-513a-1"
## [29] "hsa-mir-516b-1" "hsa-mir-518c" "hsa-mir-519a-2" "hsa-mir-548s"
## [33] "hsa-mir-584" "hsa-mir-653" "hsa-mir-656" "hsa-mir-675"
## [37] "hsa-mir-760" "hsa-mir-770" "hsa-mir-873" "hsa-mir-876"
## [1] "bicluster5"
## [1] "G6PD.RPPA" "ASNS.RPPA" "RBM15.RPPA" "ATM.RPPA"
## [5] "EGFR.RPPA" "TSC1.RPPA" "GAPDH.RPPA" "TFRC.RPPA"
## [9] "CDKN1A.R2Gn" "PEA15.R2Gn" "ADAR.R2Gn" "SHC1.R2Gn"
## [13] "GAPDH.R2Gn" "HSPA1A.R2Gn" "hsa-mir-1179" "hsa-mir-1255a"
## [17] "hsa-mir-1305" "hsa-mir-184" "hsa-mir-200a" "hsa-mir-200b"
## [21] "hsa-mir-206" "hsa-mir-216b" "hsa-mir-217" "hsa-mir-218-1"
## [25] "hsa-mir-219-1" "hsa-mir-26a-1" "hsa-mir-296" "hsa-mir-3173"
## [29] "hsa-mir-3676" "hsa-mir-3687" "hsa-mir-3909" "hsa-mir-3926-1"
## [33] "hsa-mir-3940" "hsa-mir-548q" "hsa-mir-552" "hsa-mir-580"
## [37] "hsa-mir-636"
## [1] "bicluster28"
## [1] "TFRC.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn" "FN1.R2Gn"
## [5] "GAPDH.R2Gn" "TFRC.R2Gn" "HSPA1A.R2Gn" "ERRFI1.R2Gn"
## [9] "hsa-mir-1185-1" "hsa-mir-1197" "hsa-mir-1249" "hsa-mir-1254"
## [13] "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1292"
## [17] "hsa-mir-135a-1" "hsa-mir-137" "hsa-mir-138-1" "hsa-mir-138-2"
## [21] "hsa-mir-346" "hsa-mir-3610" "hsa-mir-3687" "hsa-mir-380"
## [25] "hsa-mir-3926-1" "hsa-mir-3940" "hsa-mir-433" "hsa-mir-466"
## [29] "hsa-mir-485" "hsa-mir-488" "hsa-mir-490" "hsa-mir-499"
## [33] "hsa-mir-525" "hsa-mir-541" "hsa-mir-543" "hsa-mir-615"
## [37] "hsa-mir-770" "hsa-mir-885" "hsa-mir-9-3"
## [1] "bicluster9"
## [1] "G6PD.RPPA" "ASNS.RPPA" "GATA3.RPPA" "EGFR.RPPA"
## [5] "INPP4B.RPPA" "TTF1.RPPA" "VHL.RPPA" "MYH11.RPPA"
## [9] "NF2.RPPA" "TFRC.RPPA" "G6PD.R2Gn" "CDH2.R2Gn"
## [13] "FOXO3.R2Gn" "TGM2.R2Gn" "HSPA1A.R2Gn" "SQSTM1.R2Gn"
## [17] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1228" "hsa-mir-1247"
## [21] "hsa-mir-1269" "hsa-mir-138-1" "hsa-mir-206" "hsa-mir-2277"
## [25] "hsa-mir-301b" "hsa-mir-31" "hsa-mir-320c-2" "hsa-mir-329-2"
## [29] "hsa-mir-376a-2" "hsa-mir-377" "hsa-mir-3917" "hsa-mir-3926-2"
## [33] "hsa-mir-411" "hsa-mir-485" "hsa-mir-487a" "hsa-mir-494"
## [37] "hsa-mir-499" "hsa-mir-516a-1" "hsa-mir-516b-1" "hsa-mir-517a"
## [41] "hsa-mir-520a" "hsa-mir-525" "hsa-mir-548v" "hsa-mir-577"
## [45] "hsa-mir-607" "hsa-mir-655" "hsa-mir-656" "hsa-mir-668"
## [49] "hsa-mir-7-2" "hsa-mir-770"
## [1] "bicluster12"
## [1] "IGFBP2.RPPA" "TTF1.RPPA" "GAPDH.RPPA" "MSH6.RPPA"
## [5] "TFRC.RPPA" "MSH2.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [9] "CDKN1A.R2Gn" "PDCD4.R2Gn" "HSPA1A.R2Gn" "SNAI2.R2Gn"
## [13] "SQSTM1.R2Gn" "hsa-mir-1185-1" "hsa-mir-1262" "hsa-mir-1269"
## [17] "hsa-mir-129-2" "hsa-mir-1292" "hsa-mir-1293" "hsa-mir-196a-2"
## [21] "hsa-mir-200a" "hsa-mir-31" "hsa-mir-3199-1" "hsa-mir-320c-2"
## [25] "hsa-mir-34b" "hsa-mir-3655" "hsa-mir-3687" "hsa-mir-3923"
## [29] "hsa-mir-3934" "hsa-mir-411" "hsa-mir-429" "hsa-mir-4326"
## [33] "hsa-mir-483" "hsa-mir-494" "hsa-mir-510" "hsa-mir-548q"
## [37] "hsa-mir-552" "hsa-mir-561" "hsa-mir-615" "hsa-mir-624"
## [41] "hsa-mir-655" "hsa-mir-656" "hsa-mir-670" "hsa-mir-675"
## [45] "hsa-mir-891a" "hsa-mir-9-1" "hsa-mir-9-2" "hsa-mir-9-3"
## [49] "hsa-mir-937"
## [1] "bicluster1"
## [1] "G6PD.RPPA" "BRCA2.RPPA" "FASN.RPPA" "ACVRL1.RPPA"
## [5] "GAPDH.RPPA" "TFRC.RPPA" "GAPDH.R2Gn" "hsa-mir-106a"
## [9] "hsa-mir-1228" "hsa-mir-124-3" "hsa-mir-1269" "hsa-mir-1274b"
## [13] "hsa-mir-135a-1" "hsa-mir-135a-2" "hsa-mir-139" "hsa-mir-215"
## [17] "hsa-mir-3130-1" "hsa-mir-3173" "hsa-mir-320c-1" "hsa-mir-346"
## [21] "hsa-mir-34b" "hsa-mir-3619" "hsa-mir-3690" "hsa-mir-380"
## [25] "hsa-mir-525" "hsa-mir-580" "hsa-mir-618" "hsa-mir-636"
## [29] "hsa-mir-639" "hsa-mir-765"
## [1] "bicluster23"
## [1] "IGFBP2.RPPA" "PTEN.RPPA" "EGFR.RPPA" "FASN.RPPA"
## [5] "MYH11.RPPA" "PDK1.RPPA" "ERCC1.RPPA" "ADAR.R2Gn"
## [9] "EGFR.R2Gn" "FASN.R2Gn" "SHC1.R2Gn" "PIK3R1.R2Gn"
## [13] "TUBA1B.R2Gn" "ERRFI1.R2Gn" "SYP.R2Gn" "hsa-mir-1251"
## [17] "hsa-mir-135a-1" "hsa-mir-187" "hsa-mir-196a-2" "hsa-mir-219-1"
## [21] "hsa-mir-2277" "hsa-mir-26a-1" "hsa-mir-30c-1" "hsa-mir-3173"
## [25] "hsa-mir-3651" "hsa-mir-3676" "hsa-mir-3687" "hsa-mir-548s"
## [29] "hsa-mir-551b" "hsa-mir-570" "hsa-mir-605" "hsa-mir-636"
## [33] "hsa-mir-659" "hsa-mir-663" "hsa-mir-7-2" "hsa-mir-767"
## [37] "hsa-mir-9-3"
## [1] "bicluster4"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "G6PD.R2Gn" "IGFBP2.R2Gn"
## [5] "RPS6.R2Gn" "PTK2.R2Gn" "CCND1.R2Gn" "PIK3R2.R2Gn"
## [9] "ERRFI1.R2Gn" "hsa-mir-105-1" "hsa-mir-105-2" "hsa-mir-1247"
## [13] "hsa-mir-1248" "hsa-mir-1249" "hsa-mir-200a" "hsa-mir-2114"
## [17] "hsa-mir-218-1" "hsa-mir-301b" "hsa-mir-326" "hsa-mir-34b"
## [21] "hsa-mir-3610" "hsa-mir-3909" "hsa-mir-511-1" "hsa-mir-511-2"
## [25] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-548s" "hsa-mir-561"
## [29] "hsa-mir-615" "hsa-mir-627" "hsa-mir-642a" "hsa-mir-891a"
## [1] "bicluster36"
## [1] "IGFBP2.RPPA" "TTF1.RPPA" "IGFBP2.R2Gn" "ITGA2.R2Gn"
## [5] "COL6A1.R2Gn" "TFRC.R2Gn" "SYP.R2Gn" "RET.R2Gn"
## [9] "hsa-mir-122" "hsa-mir-124-2" "hsa-mir-1248" "hsa-mir-1249"
## [13] "hsa-mir-1255a" "hsa-mir-1305" "hsa-mir-187" "hsa-mir-2114"
## [17] "hsa-mir-30c-1" "hsa-mir-3173" "hsa-mir-3187" "hsa-mir-3199-2"
## [21] "hsa-mir-3610" "hsa-mir-372" "hsa-mir-433" "hsa-mir-517a"
## [25] "hsa-mir-551b" "hsa-mir-585" "hsa-mir-7-3" "hsa-mir-876"
## [29] "hsa-mir-9-3"
## [1] "bicluster14"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "NF2.RPPA" "ERBB3.R2Gn"
## [5] "IGFBP2.R2Gn" "EEF2.R2Gn" "COL6A1.R2Gn" "SYP.R2Gn"
## [9] "hsa-mir-1249" "hsa-mir-1262" "hsa-mir-1269" "hsa-mir-153-1"
## [13] "hsa-mir-200a" "hsa-mir-200b" "hsa-mir-26a-1" "hsa-mir-301b"
## [17] "hsa-mir-3690" "hsa-mir-3926-1" "hsa-mir-488" "hsa-mir-516a-1"
## [21] "hsa-mir-516a-2" "hsa-mir-517a" "hsa-mir-520a" "hsa-mir-526b"
## [25] "hsa-mir-585" "hsa-mir-7-2"
## [1] "bicluster17"
## [1] "G6PD.RPPA" "FASN.RPPA" "TSC1.RPPA" "TTF1.RPPA"
## [5] "MYH11.RPPA" "ERBB3.R2Gn" "PRKCD.R2Gn" "FN1.R2Gn"
## [9] "PEA15.R2Gn" "ADAR.R2Gn" "SERPINE1.R2Gn" "SHC1.R2Gn"
## [13] "CCND1.R2Gn" "ANXA7.R2Gn" "hsa-mir-124-3" "hsa-mir-1255a"
## [17] "hsa-mir-1270-1" "hsa-mir-1292" "hsa-mir-218-1" "hsa-mir-3199-2"
## [21] "hsa-mir-3610" "hsa-mir-3652" "hsa-mir-3926-2" "hsa-mir-4326"
## [25] "hsa-mir-506" "hsa-mir-507" "hsa-mir-508" "hsa-mir-509-1"
## [29] "hsa-mir-509-2" "hsa-mir-509-3" "hsa-mir-513a-1" "hsa-mir-513a-2"
## [33] "hsa-mir-514-1" "hsa-mir-514-2" "hsa-mir-514-3" "hsa-mir-636"
## [37] "hsa-mir-670" "hsa-mir-760" "hsa-mir-9-3"
## [1] "bicluster3"
## [1] "PDCD4.RPPA" "ERBB3.R2Gn" "IGFBP2.R2Gn" "ADAR.R2Gn"
## [5] "SERPINE1.R2Gn" "MYH9.R2Gn" "HSPA1A.R2Gn" "hsa-mir-124-3"
## [9] "hsa-mir-1248" "hsa-mir-129-2" "hsa-mir-1292" "hsa-mir-1304"
## [13] "hsa-mir-182" "hsa-mir-2114" "hsa-mir-3676" "hsa-mir-3678"
## [17] "hsa-mir-3682" "hsa-mir-499" "hsa-mir-516a-2" "hsa-mir-516b-1"
## [21] "hsa-mir-518b" "hsa-mir-519a-2" "hsa-mir-525" "hsa-mir-526b"
## [25] "hsa-mir-570" "hsa-mir-624" "hsa-mir-7-2" "hsa-mir-765"
## [29] "hsa-mir-96"
## [1] "bicluster35"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "GATA3.RPPA" "PDCD4.RPPA"
## [5] "GAPDH.RPPA" "IGFBP2.R2Gn" "EEF2.R2Gn" "YWHAE.R2Gn"
## [9] "PRKCA.R2Gn" "PRRT2.R2Gn" "CAV1.R2Gn" "GAPDH.R2Gn"
## [13] "HSPA1A.R2Gn" "hsa-mir-105-1" "hsa-mir-200b" "hsa-mir-204"
## [17] "hsa-mir-216a" "hsa-mir-301b" "hsa-mir-3191" "hsa-mir-320c-1"
## [21] "hsa-mir-3926-2" "hsa-mir-3940" "hsa-mir-488" "hsa-mir-516b-1"
## [25] "hsa-mir-517a" "hsa-mir-545" "hsa-mir-552" "hsa-mir-7-3"
## [29] "hsa-mir-760" "hsa-mir-891a" "hsa-mir-937"
## [1] "bicluster39"
## [1] "GAPDH.RPPA" "MSH6.RPPA" "TFRC.RPPA" "EEF2.R2Gn"
## [5] "YWHAE.R2Gn" "PIK3R1.R2Gn" "PRDX1.R2Gn" "hsa-mir-105-1"
## [9] "hsa-mir-1248" "hsa-mir-1255a" "hsa-mir-1269" "hsa-mir-129-2"
## [13] "hsa-mir-3928" "hsa-mir-607" "hsa-mir-643" "hsa-mir-7-3"
## [17] "hsa-mir-873" "hsa-mir-876" "hsa-mir-939"
## [1] "bicluster26"
## [1] "PTEN.RPPA" "ATM.RPPA" "EGFR.RPPA" "PDCD4.RPPA"
## [5] "AR.RPPA" "TFRC.RPPA" "ERBB3.R2Gn" "FN1.R2Gn"
## [9] "CDH2.R2Gn" "ITGA2.R2Gn" "SERPINE1.R2Gn" "PIK3R1.R2Gn"
## [13] "TFRC.R2Gn" "ERRFI1.R2Gn" "hsa-mir-1249" "hsa-mir-1274b"
## [17] "hsa-mir-190b" "hsa-mir-216b" "hsa-mir-217" "hsa-mir-224"
## [21] "hsa-mir-296" "hsa-mir-3173" "hsa-mir-3199-1" "hsa-mir-320c-2"
## [25] "hsa-mir-3662" "hsa-mir-3923" "hsa-mir-452" "hsa-mir-488"
## [29] "hsa-mir-499" "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1"
## [33] "hsa-mir-525" "hsa-mir-548q" "hsa-mir-561" "hsa-mir-577"
## [37] "hsa-mir-580" "hsa-mir-627" "hsa-mir-663" "hsa-mir-675"
## [1] "bicluster40"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "EGFR.RPPA" "ACVRL1.RPPA"
## [5] "PRDX1.RPPA" "MSH6.RPPA" "MYH11.RPPA" "MSH2.RPPA"
## [9] "IGFBP2.R2Gn" "FN1.R2Gn" "CDH2.R2Gn" "EEF2.R2Gn"
## [13] "RPS6.R2Gn" "TGM2.R2Gn" "MYH11.R2Gn" "SQSTM1.R2Gn"
## [17] "hsa-mir-1-2" "hsa-mir-122" "hsa-mir-1228" "hsa-mir-1249"
## [21] "hsa-mir-1270-1" "hsa-mir-129-1" "hsa-mir-129-2" "hsa-mir-200a"
## [25] "hsa-mir-205" "hsa-mir-224" "hsa-mir-3166" "hsa-mir-3170"
## [29] "hsa-mir-3190" "hsa-mir-3199-1" "hsa-mir-346" "hsa-mir-3648"
## [33] "hsa-mir-429" "hsa-mir-452" "hsa-mir-466" "hsa-mir-489"
## [37] "hsa-mir-490" "hsa-mir-517a" "hsa-mir-525" "hsa-mir-526b"
## [41] "hsa-mir-548b" "hsa-mir-551b" "hsa-mir-639" "hsa-mir-656"
## [45] "hsa-mir-665" "hsa-mir-675" "hsa-mir-7-2" "hsa-mir-767"
## [49] "hsa-mir-873" "hsa-mir-876" "hsa-mir-885" "hsa-mir-937"
## [1] "bicluster18"
## [1] "GATA3.RPPA" "PEA15.RPPA" "MSH6.RPPA" "CDH2.R2Gn"
## [5] "ADAR.R2Gn" "CTNNB1.R2Gn" "RPS6.R2Gn" "TGM2.R2Gn"
## [9] "GAPDH.R2Gn" "hsa-mir-124-3" "hsa-mir-1254" "hsa-mir-1255a"
## [13] "hsa-mir-1269" "hsa-mir-1304" "hsa-mir-516a-1" "hsa-mir-518b"
## [17] "hsa-mir-639" "hsa-mir-656"
## [1] "bicluster6"
## [1] "G6PD.RPPA" "IGFBP2.RPPA" "RBM15.RPPA" "EGFR.RPPA"
## [5] "IGFBP2.R2Gn" "NDRG1.R2Gn" "HSPA1A.R2Gn" "hsa-mir-1228"
## [9] "hsa-mir-1269" "hsa-mir-1270-1" "hsa-mir-1292" "hsa-mir-138-1"
## [13] "hsa-mir-138-2" "hsa-mir-217" "hsa-mir-3144" "hsa-mir-3614"
## [17] "hsa-mir-585" "hsa-mir-605" "hsa-mir-873" "hsa-mir-939"
## [1] "bicluster30"
## [1] "EGFR.RPPA" "INPP4B.RPPA" "ACVRL1.RPPA" "PRDX1.RPPA"
## [5] "TFRC.RPPA" "ADAR.R2Gn" "CTNNB1.R2Gn" "RPS6.R2Gn"
## [9] "SHC1.R2Gn" "CCND1.R2Gn" "hsa-mir-105-2" "hsa-mir-124-1"
## [13] "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1292" "hsa-mir-133b"
## [17] "hsa-mir-153-1" "hsa-mir-206" "hsa-mir-2114" "hsa-mir-3610"
## [21] "hsa-mir-3614" "hsa-mir-3678" "hsa-mir-3917" "hsa-mir-499"
## [25] "hsa-mir-519a-2" "hsa-mir-570" "hsa-mir-577" "hsa-mir-639"
## [29] "hsa-mir-767"
## [1] "bicluster8"
## [1] "G6PD.RPPA" "ASNS.RPPA" "PTEN.RPPA" "ATM.RPPA"
## [5] "MYH11.RPPA" "TFRC.RPPA" "KDR.R2Gn" "ERBB3.R2Gn"
## [9] "FN1.R2Gn" "AKT2.R2Gn" "EEF2.R2Gn" "SERPINE1.R2Gn"
## [13] "TGM2.R2Gn" "hsa-mir-122" "hsa-mir-3170" "hsa-mir-3191"
## [17] "hsa-mir-346" "hsa-mir-3652" "hsa-mir-3909" "hsa-mir-519a-2"
## [21] "hsa-mir-520a" "hsa-mir-548s" "hsa-mir-592" "hsa-mir-639"
## [25] "hsa-mir-765"
## [1] "bicluster11"
## [1] "G6PD.RPPA" "VHL.RPPA" "AR.RPPA" "G6PD.R2Gn"
## [5] "TGM2.R2Gn" "COL6A1.R2Gn" "hsa-mir-1270-1" "hsa-mir-129-2"
## [9] "hsa-mir-26a-1" "hsa-mir-320c-1" "hsa-mir-3676" "hsa-mir-516a-1"
## [13] "hsa-mir-516a-2" "hsa-mir-518b" "hsa-mir-639" "hsa-mir-940"
## [1] "bicluster15"
## [1] "PDCD4.RPPA" "VHL.RPPA" "ERRFI1.R2Gn" "hsa-mir-1270-1"
## [5] "hsa-mir-2114" "hsa-mir-3173" "hsa-mir-346" "hsa-mir-516a-1"
## [9] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-518b" "hsa-mir-548b"
## [13] "hsa-mir-551b" "hsa-mir-552" "hsa-mir-570" "hsa-mir-670"
## [17] "hsa-mir-7-2" "hsa-mir-765" "hsa-mir-876"
## [1] "bicluster32"
## [1] "RBM15.RPPA" "DIRAS3.R2Gn" "ERBB3.R2Gn" "IGFBP2.R2Gn"
## [5] "FN1.R2Gn" "SERPINE1.R2Gn" "CTNNB1.R2Gn" "RPS6.R2Gn"
## [9] "HSPA1A.R2Gn" "IDH3A.R2Gn" "hsa-mir-105-2" "hsa-mir-2114"
## [13] "hsa-mir-3170" "hsa-mir-561" "hsa-mir-570" "hsa-mir-708"
## [17] "hsa-mir-760"
## [1] "bicluster33"
## [1] "FN1.R2Gn" "GAPDH.R2Gn" "HSPA1A.R2Gn" "hsa-mir-1247"
## [5] "hsa-mir-137" "hsa-mir-138-1" "hsa-mir-196a-2" "hsa-mir-216b"
## [9] "hsa-mir-3173" "hsa-mir-3191" "hsa-mir-3193" "hsa-mir-3678"
## [13] "hsa-mir-383" "hsa-mir-499" "hsa-mir-516a-1" "hsa-mir-516a-2"
## [17] "hsa-mir-516b-1" "hsa-mir-517a" "hsa-mir-526b" "hsa-mir-615"
## [21] "hsa-mir-765" "hsa-mir-939" "hsa-mir-940"
## [1] "bicluster24"
## [1] "EGFR.RPPA" "TTF1.RPPA" "XBP1.RPPA" "MSH6.RPPA"
## [5] "NF2.RPPA" "PDK1.RPPA" "CTNNB1.R2Gn" "RPS6.R2Gn"
## [9] "PRKCA.R2Gn" "PIK3R1.R2Gn" "NDRG1.R2Gn" "HSPA1A.R2Gn"
## [13] "CHGA.R2Gn" "hsa-mir-1197" "hsa-mir-1258" "hsa-mir-1270-1"
## [17] "hsa-mir-1304" "hsa-mir-1305" "hsa-mir-200a" "hsa-mir-205"
## [21] "hsa-mir-3610" "hsa-mir-3909" "hsa-mir-507" "hsa-mir-511-1"
## [25] "hsa-mir-516a-1" "hsa-mir-516b-1" "hsa-mir-548q" "hsa-mir-548v"
## [29] "hsa-mir-552" "hsa-mir-570" "hsa-mir-577" "hsa-mir-605"
## [33] "hsa-mir-653" "hsa-mir-656" "hsa-mir-937"extracted_by_bic_result = list("1bc" = f1_bic,
"2bc" = f2_bic,
"3bc" = f3_bic,
"5bc" = f5_bic,
"10bc" = f10_bic,
"15bc" = f15_bic,
"20bc" = f20_bic,
"35bc" = f35_bic,
"43bc" = f43_bic)
saveRDS(extracted_by_bic_result, file = "data/sel_features/results_fabia_extracted_by_bic.rds")plotting:
plot.fabia.selbyBic = function(fabia_result, fabia_bic, bc, abs.ymax = 2.1) {
total_bc = fabia_result@p1
if (bc > total_bc) {
stop("Requested bicluster number exceeds the total available biclusters.")
}
FABIA.L = as.data.frame(fabia_result@L)
FABIA.L$var = rownames(FABIA.L)
biclusterx = paste("bicluster", bc, sep = "")
FABIA.L$in.bic = FABIA.L$var %in% names(fabia_bic[[biclusterx]])
FABIA.L$dataset = sapply(FABIA.L$var, retrieve.dataset.type)
#FABIA.L
ggplot(data = FABIA.L, aes_string(x= "var", y = biclusterx, color = "in.bic", shape="dataset")) +
geom_point() +
#geom_text(nudge_y = .04, alpha = 1, size = 3) +
theme(
axis.title.x = element_blank(),
axis.text.x = element_blank(),
axis.ticks.x = element_blank()
) +
ggtitle(paste(total_bc , "Biclusters")) +
xlab(biclusterx) +
ylim(-abs.ymax, abs.ymax)
#if (perc5line) {
# perc5 = min(FABIA.L[FABIA.L$top5 == T, biclusterx])
# p = p + geom_hline(yintercept = perc5)
#}
#p
}1 Bicluster
plot.fabia.selbyBic(fabia_1, f1_bic, 1, abs.ymax = 1)
2 Biclusters
plot.fabia.selbyBic(fabia_2, f2_bic, 1, abs.ymax = 1)
plot.fabia.selbyBic(fabia_2, f2_bic, 2, abs.ymax = 1)
3 Biclusters
plot.fabia.selbyBic(fabia_3, f3_bic, 1, abs.ymax = 1.5)
plot.fabia.selbyBic(fabia_3, f3_bic, 2, abs.ymax = 1.5)
plot.fabia.selbyBic(fabia_3, f3_bic, 3, abs.ymax = 1.5)
5 Biclusters
plot.fabia.selbyBic(fabia_5, f5_bic, 1, abs.ymax = 2)
plot.fabia.selbyBic(fabia_5, f5_bic, 2, abs.ymax = 2)
plot.fabia.selbyBic(fabia_5, f5_bic, 3, abs.ymax = 2)
plot.fabia.selbyBic(fabia_5, f5_bic, 4, abs.ymax = 2)
plot.fabia.selbyBic(fabia_5, f5_bic, 5, abs.ymax = 2)
10 Biclusters
plot.fabia.selbyBic(fabia_10, f10_bic, 1)
plot.fabia.selbyBic(fabia_10, f10_bic, 2)
plot.fabia.selbyBic(fabia_10, f10_bic, 3)
plot.fabia.selbyBic(fabia_10, f10_bic, 4)
plot.fabia.selbyBic(fabia_10, f10_bic, 5)
plot.fabia.selbyBic(fabia_10, f10_bic, 6)
plot.fabia.selbyBic(fabia_10, f10_bic, 7)
plot.fabia.selbyBic(fabia_10, f10_bic, 8)
plot.fabia.selbyBic(fabia_10, f10_bic, 9)
plot.fabia.selbyBic(fabia_10, f10_bic, 10)
### Manual calculation and display of thres L.
FABIA does not return the threshold L. We will use the code also used in the ensemble document.
get.FABIA.tL = function(FABIA.result, tZ.FABIA = 0.5) {
threasZ.fabia= tZ.FABIA
tt = 0
for (i in 1:ncol(L(FABIA.result))) {
tt = tt + sum(L(FABIA.result)[,i]^2) * sum(Z(FABIA.result)[i,]^2)
}
tt = tt/(as.double(nrow(L(FABIA.result))) * as.double(ncol(L(FABIA.result))) * as.double(ncol(Z(FABIA.result))))
threasL.fabia = sqrt(tt) / threasZ.fabia
threasL.fabia
}print(paste(1, "Bicluster, thresL =", get.FABIA.tL(fabia_1)))## [1] "1 Bicluster, thresL = 0.410763033438725"print(paste(2, "Biclusters, thresL =", get.FABIA.tL(fabia_2)))## [1] "2 Biclusters, thresL = 0.370328611007706"print(paste(3, "Biclusters, thresL =", get.FABIA.tL(fabia_3)))## [1] "3 Biclusters, thresL = 0.635805852508974"print(paste(5, "Biclusters, thresL =", get.FABIA.tL(fabia_5)))## [1] "5 Biclusters, thresL = 0.745039315974718"print(paste(10, "Biclusters, thresL =", get.FABIA.tL(fabia_10)))## [1] "10 Biclusters, thresL = 0.671081794414907"print(paste(15, "Biclusters, thresL =", get.FABIA.tL(fabia_15)))## [1] "15 Biclusters, thresL = 0.588938281330448"print(paste(20, "Biclusters, thresL =", get.FABIA.tL(fabia_20)))## [1] "20 Biclusters, thresL = 0.567912339284411"print(paste(35, "Biclusters, thresL =", get.FABIA.tL(fabia_35)))## [1] "35 Biclusters, thresL = 0.350658418759497"print(paste(43, "Biclusters, thresL =", get.FABIA.tL(fabia_43)))## [1] "43 Biclusters, thresL = 0.218550086830506"E Top n% samples for each Bicluster
top_x_percent.s = function(fabia.result, perct = 5, print = F, show.factor = F) {
quantile = 1 - perct * 0.01
fabia_Z = t(fabia.result@Z)
out.list = vector("list", length = ncol(fabia_Z))
names(out.list) = colnames(fabia_Z)
for (i in 1:ncol(fabia_Z)) {
Z_curr = fabia_Z[,i]
quant = quantile(abs(Z_curr), quantile)
sel = abs(Z_curr) >= quant
out.list[[i]] = Z_curr[sel]
if(print) {
print(colnames(fabia_Z)[i])
if (show.factor) {
print(Z_curr[sel])
} else {
print(names(Z_curr[sel]))
}
}
}
out.list
}
#boxplot(fabia_1@L)Top 5%
f1_5.s = top_x_percent.s(fabia_1)
f2_5.s = top_x_percent.s(fabia_2)
f3_5.s = top_x_percent.s(fabia_3)
f5_5.s = top_x_percent.s(fabia_5)
f10_5.s = top_x_percent.s(fabia_10)
f15_5.s = top_x_percent.s(fabia_15)
f20_5.s = top_x_percent.s(fabia_20)
f35_5.s = top_x_percent.s(fabia_35)
f43_5.s = top_x_percent.s(fabia_43)Top 10%
f1_10.s = top_x_percent.s(fabia_1, perct = 10)
f2_10.s = top_x_percent.s(fabia_2, perct = 10)
f3_10.s = top_x_percent.s(fabia_3, perct = 10)
f5_10.s = top_x_percent.s(fabia_5, perct = 10)
f10_10.s = top_x_percent.s(fabia_10, perct = 10)
f15_10.s = top_x_percent.s(fabia_15, perct = 10)
f20_10.s = top_x_percent.s(fabia_20, perct = 10)
f35_10.s = top_x_percent.s(fabia_35, perct = 10)
f43_10.s = top_x_percent.s(fabia_43, perct = 10)Top 25%
f1_25.s = top_x_percent.s(fabia_1, perct = 25)
f2_25.s = top_x_percent.s(fabia_2, perct = 25)
f3_25.s = top_x_percent.s(fabia_3, perct = 25)
f5_25.s = top_x_percent.s(fabia_5, perct = 25)
f10_25.s = top_x_percent.s(fabia_10, perct = 25)
f15_25.s = top_x_percent.s(fabia_15, perct = 25)
f20_25.s = top_x_percent.s(fabia_20, perct = 25)
f35_25.s = top_x_percent.s(fabia_35, perct = 25)
f43_25.s = top_x_percent.s(fabia_43, perct = 25)C. Visualization of top x% (Max 10 Biclusters)
Check max and min value of loadings in order to create symmetrical plots:
max_fZ_all = max(max(fabia_1@Z),
max(fabia_2@Z),
max(fabia_3@Z),
max(fabia_5@Z),
max(fabia_10@Z),
max(fabia_15@Z),
max(fabia_20@Z),
max(fabia_35@Z),
max(fabia_43@Z)
)
min_fZ_all = min(min(fabia_1@Z),
min(fabia_2@Z),
min(fabia_3@Z),
min(fabia_5@Z),
min(fabia_10@Z),
min(fabia_15@Z),
min(fabia_20@Z),
min(fabia_35@Z),
min(fabia_43@Z)
)
c(max_fZ_all, min_fZ_all)## [1] 4.170627 -3.762122The limits of y axis will be (-5, 5) in order to make them symmetrical.
plot.fabia.topx.s = function(fabia_result, fabia_top5, fabia_top10, fabia_top25, bc, abs.ymax = 5) {
total_bc = fabia_result@p1
if (bc > total_bc) {
stop("Requested bicluster number exceeds the total available biclusters.")
}
FABIA.Z = as.data.frame(t(fabia_result@Z))
FABIA.Z$MID = rownames(FABIA.Z)
biclusterx = paste("bicluster", bc, sep = "")
FABIA.Z$top5 = FABIA.Z$MID %in% names(fabia_top5[[biclusterx]])
FABIA.Z$top10 = FABIA.Z$MID %in% names(fabia_top10[[biclusterx]])
FABIA.Z$top25 = FABIA.Z$MID %in% names(fabia_top25[[biclusterx]])
FABIA.Z$top = NA
for(i in 1:nrow(FABIA.Z)) {
if (FABIA.Z[i,]$top25 == F) {
FABIA.Z[i,]$top = NA
} else if (FABIA.Z[i,]$top10 == F) {
FABIA.Z[i,]$top = "Top 11% ~ 25%"
} else if (FABIA.Z[i,]$top5 == F){
FABIA.Z[i,]$top = "Top 06% ~ 10%"
} else {
FABIA.Z[i,]$top = "Top 05%"
}
}
#print(FABIA.Z)
ggplot(data = FABIA.Z, aes_string(x= "MID", y = biclusterx, color = "top", label = "MID")) +
geom_point() +
geom_text_repel(data=subset(FABIA.Z, !is.na(top)), alpha = 1, size = 3, fontface = "bold",
force = 200, force_pull = 1,
max.overlaps = 50) +
theme(
axis.title.x = element_blank(),
axis.text.x = element_blank(),
axis.ticks.x = element_blank()
) +
ggtitle(paste(total_bc , "Biclusters")) +
xlab(biclusterx) +
ylim(-abs.ymax, abs.ymax)
#if (perc5line) {
# perc5 = min(FABIA.L[FABIA.L$top5 == T, biclusterx])
# p = p + geom_hline(yintercept = perc5)
#}
#p
}1 Bicluster
plot.fabia.topx.s(fabia_1, f1_5.s, f1_10.s, f1_25.s, bc = 1)
2 Biclusters
plot.fabia.topx.s(fabia_2, f2_5.s, f2_10.s, f2_25.s, bc = 1)
plot.fabia.topx.s(fabia_2, f2_5.s, f2_10.s, f2_25.s, bc = 2)
### 3 Biclusters
plot.fabia.topx.s(fabia_3, f3_5.s, f3_10.s, f3_25.s, bc = 1)
plot.fabia.topx.s(fabia_3, f3_5.s, f3_10.s, f3_25.s, bc = 2)
plot.fabia.topx.s(fabia_3, f3_5.s, f3_10.s, f3_25.s, bc = 3)
5 Biclusters
plot.fabia.topx.s(fabia_5, f5_5.s, f5_10.s, f5_25.s, bc = 1)
plot.fabia.topx.s(fabia_5, f5_5.s, f5_10.s, f5_25.s, bc = 2)
plot.fabia.topx.s(fabia_5, f5_5.s, f5_10.s, f5_25.s, bc = 3)
plot.fabia.topx.s(fabia_5, f5_5.s, f5_10.s, f5_25.s, bc = 4)
plot.fabia.topx.s(fabia_5, f5_5.s, f5_10.s, f5_25.s, bc = 5)
10 Biclusters
plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 1)
plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 2)
plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 3)
plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 4)
plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 5)
plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 6)
plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 7)
plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 8)
plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 9)
plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 10)