library(fabia)
## Loading required package: Biobase
## Loading required package: BiocGenerics
## 
## Attaching package: 'BiocGenerics'
## The following objects are masked from 'package:stats':
## 
##     IQR, mad, sd, var, xtabs
## The following objects are masked from 'package:base':
## 
##     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
##     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
##     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
##     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
##     Position, rank, rbind, Reduce, rownames, sapply, setdiff, table,
##     tapply, union, unique, unsplit, which.max, which.min
## Welcome to Bioconductor
## 
##     Vignettes contain introductory material; view with
##     'browseVignettes()'. To cite Bioconductor, see
##     'citation("Biobase")', and for packages 'citation("pkgname")'.
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## +----------------------------+
## Citation: S. Hochreiter et al.,
## FABIA: Factor Analysis for Bicluster Acquisition,
## Bioinformatics 26(12):1520-1527, 2010.
## BibTex: enter 'toBibtex(citation("fabia"))'
## 
## Homepage: http://www.bioinf.jku.at/software/fabia/fabia.html
## 
## FABIA Package Version 2.50.0
library(ggplot2)
library(ggrepel)
data.vertical = readRDS("data/derived/data_vertical_numeric_only.rds")

0. Preparation

a) Check again to reassure if colnames are identical before binding

#
identical(colnames(data.vertical$RPPAArray), colnames(data.vertical$RNASeq2GeneNorm))
## [1] TRUE
identical(colnames(data.vertical$RNASeq2GeneNorm), colnames(data.vertical$miRNASeqGene))
## [1] TRUE

b) Merge data into 1 matrix

data.vert.joined = do.call("rbind", list(data.vertical$RPPAArray, data.vertical$RNASeq2GeneNorm, data.vertical$miRNASeqGene))
data.fabia = as.matrix(data.vert.joined)

1. FABIA

1 Bicluster

set.seed(42)
fabia_1 = fabia(data.fabia, p = 1)
## Running FABIA on a 701x43 matrix with
##    Number of biclusters ---------------- p: 1
##    Sparseness factor --------------- alpha: 0.01
##    Number of iterations -------------- cyc: 500
##    Loading prior parameter ----------- spl: 0
##    Factor prior parameter ------------ spz: 0.5
##    Initialization loadings--------- random: 1 = interval
##    Nonnegative Loadings and Factors ------: 0 = No
##    Centering ---------------------- center: 2 = median
##    Quantile scaling (0.75-0.25): ---- norm: 1 = Yes
##    Scaling loadings per iteration -- scale: 0 = No
##    Constraint variational parameter -- lap: 1
##    Max. number of biclusters per row -- nL: 0 = no limit
##    Max. number of row elements / biclu. lL: 0 = no limit
## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500
fabia_1

summary(fabia_1)
## 
## An object of class Factorization 
## 
## call:
##  "fabia"
## 
## Number of rows:  701 
## 
## Number of columns:  43 
## 
## Number of clusters:  1 
## 
##  Information content of the clusters:
##   BC 1  BC sum  
## 343.72  343.72  
## 
## 
## 
##  Information content of the samples:
##   Sample 1    Sample 2    Sample 3    Sample 4    Sample 5    Sample 6  
##       8.80        7.90        8.14        7.90        6.47        8.90  
##   Sample 7    Sample 8    Sample 9   Sample 10   Sample 11   Sample 12  
##       7.57        7.79        8.84        7.49        8.77        8.77  
##  Sample 13   Sample 14   Sample 15   Sample 16   Sample 17   Sample 18  
##       8.56        8.77        8.70        8.85        8.61        6.50  
##  Sample 19   Sample 20   Sample 21   Sample 22   Sample 23   Sample 24  
##       7.83        7.67        7.49        8.67        7.90        8.63  
##  Sample 25   Sample 26   Sample 27   Sample 28   Sample 29   Sample 30  
##       8.10        7.59        8.69        7.36        7.80        7.11  
##  Sample 31   Sample 32   Sample 33   Sample 34   Sample 35   Sample 36  
##       8.70        7.36        8.51        6.95        6.69        7.90  
##  Sample 37   Sample 38   Sample 39   Sample 40   Sample 41   Sample 42  
##       8.55        7.86        7.26        6.93        8.82        7.57  
##  Sample 43  Sample sum  
##       8.45      343.72  
## 
##  Column clusters / Factors:
##  BC 1             
##  Min.   :-1.7368  
##  1st Qu.:-1.3918  
##  Median : 0.0539  
##  Mean   :-0.3724  
##  3rd Qu.: 0.4670  
##  Max.   : 0.8026  
## 
## 
##  Row clusters / Loadings:
##  BC 1             
##  Min.   :-0.5665  
##  1st Qu.:-0.1363  
##  Median :-0.0577  
##  Mean   :-0.0194  
##  3rd Qu.: 0.0333  
##  Max.   : 0.8365
#plot(fabia_1) # Minimum 2 Dimensions needed
# extractPlot(fabia_1) # Cannot plot loadings & samples

2 Biclusters

set.seed(42)
fabia_2 = fabia(data.fabia, p = 2)
## Running FABIA on a 701x43 matrix with
##    Number of biclusters ---------------- p: 2
##    Sparseness factor --------------- alpha: 0.01
##    Number of iterations -------------- cyc: 500
##    Loading prior parameter ----------- spl: 0
##    Factor prior parameter ------------ spz: 0.5
##    Initialization loadings--------- random: 1 = interval
##    Nonnegative Loadings and Factors ------: 0 = No
##    Centering ---------------------- center: 2 = median
##    Quantile scaling (0.75-0.25): ---- norm: 1 = Yes
##    Scaling loadings per iteration -- scale: 0 = No
##    Constraint variational parameter -- lap: 1
##    Max. number of biclusters per row -- nL: 0 = no limit
##    Max. number of row elements / biclu. lL: 0 = no limit
## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500
fabia_2

summary(fabia_2)
## 
## An object of class Factorization 
## 
## call:
##  "fabia"
## 
## Number of rows:  701 
## 
## Number of columns:  43 
## 
## Number of clusters:  2 
## 
##  Information content of the clusters:
##   BC 1    BC 2  BC sum  
## 370.07  339.68  706.97  
## 
## 
## 
##  Information content of the samples:
##   Sample 1    Sample 2    Sample 3    Sample 4    Sample 5    Sample 6  
##      17.52       15.75       15.83       17.61       18.17       16.97  
##   Sample 7    Sample 8    Sample 9   Sample 10   Sample 11   Sample 12  
##      15.07       17.92       17.22       16.35       17.23       17.17  
##  Sample 13   Sample 14   Sample 15   Sample 16   Sample 17   Sample 18  
##      16.77       17.44       17.01       17.64       16.81       13.45  
##  Sample 19   Sample 20   Sample 21   Sample 22   Sample 23   Sample 24  
##      15.55       17.80       14.96       17.18       15.57       17.10  
##  Sample 25   Sample 26   Sample 27   Sample 28   Sample 29   Sample 30  
##      16.13       17.74       16.54       14.62       18.21       14.30  
##  Sample 31   Sample 32   Sample 33   Sample 34   Sample 35   Sample 36  
##      16.69       17.13       15.75       15.12       15.56       15.76  
##  Sample 37   Sample 38   Sample 39   Sample 40   Sample 41   Sample 42  
##      16.63       16.41       16.37       14.78       17.52       15.17  
##  Sample 43  Sample sum  
##      16.43      706.97  
## 
##  Column clusters / Factors:
##  BC 1              BC 2             
##  Min.   :-1.5579   Min.   :-3.2703  
##  1st Qu.:-1.0974   1st Qu.:-1.0535  
##  Median : 0.1477   Median :-0.5024  
##  Mean   :-0.0818   Mean   :-0.5302  
##  3rd Qu.: 0.5270   3rd Qu.: 0.0871  
##  Max.   : 1.7549   Max.   : 0.8557  
## 
## 
##  Row clusters / Loadings:
##  BC 1              BC 2             
##  Min.   :-0.7001   Min.   :-0.4925  
##  1st Qu.:-0.1375   1st Qu.:-0.0990  
##  Median :-0.0402   Median :-0.0300  
##  Mean   :-0.0181   Mean   :-0.0079  
##  3rd Qu.: 0.0682   3rd Qu.: 0.0418  
##  Max.   : 0.6667   Max.   : 0.5449
plot(fabia_2)

extractPlot(fabia_2)

3 Biclusters

set.seed(42)
fabia_3 = fabia(data.fabia, p = 3)
## Running FABIA on a 701x43 matrix with
##    Number of biclusters ---------------- p: 3
##    Sparseness factor --------------- alpha: 0.01
##    Number of iterations -------------- cyc: 500
##    Loading prior parameter ----------- spl: 0
##    Factor prior parameter ------------ spz: 0.5
##    Initialization loadings--------- random: 1 = interval
##    Nonnegative Loadings and Factors ------: 0 = No
##    Centering ---------------------- center: 2 = median
##    Quantile scaling (0.75-0.25): ---- norm: 1 = Yes
##    Scaling loadings per iteration -- scale: 0 = No
##    Constraint variational parameter -- lap: 1
##    Max. number of biclusters per row -- nL: 0 = no limit
##    Max. number of row elements / biclu. lL: 0 = no limit
## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500
fabia_3

summary(fabia_3)
## 
## An object of class Factorization 
## 
## call:
##  "fabia"
## 
## Number of rows:  701 
## 
## Number of columns:  43 
## 
## Number of clusters:  3 
## 
##  Information content of the clusters:
##   BC 1    BC 2    BC 3  BC sum  
## 383.32  355.74  349.95  910.88  
## 
## 
## 
##  Information content of the samples:
##   Sample 1    Sample 2    Sample 3    Sample 4    Sample 5    Sample 6  
##      20.66       22.29       23.56       20.14       21.15       20.75  
##   Sample 7    Sample 8    Sample 9   Sample 10   Sample 11   Sample 12  
##      23.47       20.61       19.82       19.66       19.84       21.50  
##  Sample 13   Sample 14   Sample 15   Sample 16   Sample 17   Sample 18  
##      19.18       22.81       19.44       22.90       19.21       18.15  
##  Sample 19   Sample 20   Sample 21   Sample 22   Sample 23   Sample 24  
##      19.52       22.05       19.56       20.74       21.06       20.72  
##  Sample 25   Sample 26   Sample 27   Sample 28   Sample 29   Sample 30  
##      22.57       21.38       22.83       23.92       20.76       20.40  
##  Sample 31   Sample 32   Sample 33   Sample 34   Sample 35   Sample 36  
##      19.96       19.95       19.90       23.24       22.56       21.93  
##  Sample 37   Sample 38   Sample 39   Sample 40   Sample 41   Sample 42  
##      22.32       20.58       19.80       20.36       23.37       24.24  
##  Sample 43  Sample sum  
##      22.05      910.88  
## 
##  Column clusters / Factors:
##  BC 1              BC 2             BC 3            
##  Min.   :-2.1935   Min.   :-2.946   Min.   :-2.047  
##  1st Qu.:-0.9310   1st Qu.:-0.701   1st Qu.:-0.636  
##  Median :-0.1501   Median :-0.176   Median :-0.254  
##  Mean   :-0.0685   Mean   :-0.156   Mean   :-0.122  
##  3rd Qu.: 0.7218   3rd Qu.: 0.631   3rd Qu.: 0.524  
##  Max.   : 1.6073   Max.   : 1.870   Max.   : 3.074  
## 
## 
##  Row clusters / Loadings:
##  BC 1              BC 2               BC 3             
##  Min.   :-0.9916   Min.   :-0.97246   Min.   :-0.9422  
##  1st Qu.:-0.1897   1st Qu.:-0.18141   1st Qu.:-0.2238  
##  Median :-0.0499   Median :-0.03762   Median :-0.0802  
##  Mean   :-0.0241   Mean   :-0.00709   Mean   :-0.0243  
##  3rd Qu.: 0.0994   3rd Qu.: 0.13417   3rd Qu.: 0.0458  
##  Max.   : 0.8738   Max.   : 1.34875   Max.   : 1.3504
plot(fabia_3)

extractPlot(fabia_3)

5 Biclusters

set.seed(42)
fabia_5 = fabia(data.fabia, p = 5)
## Running FABIA on a 701x43 matrix with
##    Number of biclusters ---------------- p: 5
##    Sparseness factor --------------- alpha: 0.01
##    Number of iterations -------------- cyc: 500
##    Loading prior parameter ----------- spl: 0
##    Factor prior parameter ------------ spz: 0.5
##    Initialization loadings--------- random: 1 = interval
##    Nonnegative Loadings and Factors ------: 0 = No
##    Centering ---------------------- center: 2 = median
##    Quantile scaling (0.75-0.25): ---- norm: 1 = Yes
##    Scaling loadings per iteration -- scale: 0 = No
##    Constraint variational parameter -- lap: 1
##    Max. number of biclusters per row -- nL: 0 = no limit
##    Max. number of row elements / biclu. lL: 0 = no limit
## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500
fabia_5

summary(fabia_5)
## 
## An object of class Factorization 
## 
## call:
##  "fabia"
## 
## Number of rows:  701 
## 
## Number of columns:  43 
## 
## Number of clusters:  5 
## 
##  Information content of the clusters:
##    BC 1     BC 2     BC 3     BC 4     BC 5   BC sum  
##  386.61   383.15   369.13   324.83   285.97  1243.48  
## 
## 
## 
##  Information content of the samples:
##   Sample 1    Sample 2    Sample 3    Sample 4    Sample 5    Sample 6  
##      30.30       27.71       31.66       26.17       29.04       29.42  
##   Sample 7    Sample 8    Sample 9   Sample 10   Sample 11   Sample 12  
##      28.95       27.91       29.01       28.31       29.28       29.70  
##  Sample 13   Sample 14   Sample 15   Sample 16   Sample 17   Sample 18  
##      28.96       30.16       28.06       31.11       27.41       28.01  
##  Sample 19   Sample 20   Sample 21   Sample 22   Sample 23   Sample 24  
##      29.52       29.20       31.10       26.67       29.71       29.36  
##  Sample 25   Sample 26   Sample 27   Sample 28   Sample 29   Sample 30  
##      28.60       29.33       30.38       32.46       28.30       27.87  
##  Sample 31   Sample 32   Sample 33   Sample 34   Sample 35   Sample 36  
##      25.13       28.50       26.53       31.77       29.99       26.11  
##  Sample 37   Sample 38   Sample 39   Sample 40   Sample 41   Sample 42  
##      26.95       28.18       27.80       30.27       28.86       32.14  
##  Sample 43  Sample sum  
##      27.57     1243.48  
## 
##  Column clusters / Factors:
##  BC 1              BC 2             BC 3             BC 4            
##  Min.   :-2.6050   Min.   :-2.485   Min.   :-1.451   Min.   :-2.627  
##  1st Qu.:-0.5765   1st Qu.:-0.711   1st Qu.:-0.168   1st Qu.:-0.869  
##  Median :-0.2037   Median :-0.151   Median : 0.150   Median :-0.288  
##  Mean   :-0.0116   Mean   :-0.166   Mean   : 0.298   Mean   :-0.276  
##  3rd Qu.: 0.7439   3rd Qu.: 0.709   3rd Qu.: 0.485   3rd Qu.: 0.187  
##  Max.   : 2.2634   Max.   : 1.555   Max.   : 4.147   Max.   : 1.747  
##  BC 5             
##  Min.   :-2.5916  
##  1st Qu.:-1.1828  
##  Median :-0.2846  
##  Mean   :-0.5572  
##  3rd Qu.:-0.0182  
##  Max.   : 1.0418  
## 
## 
##  Row clusters / Loadings:
##  BC 1              BC 2                BC 3              BC 4              
##  Min.   :-1.2716   Min.   :-1.661929   Min.   :-1.5803   Min.   :-0.95650  
##  1st Qu.:-0.3168   1st Qu.:-0.138801   1st Qu.:-0.2926   1st Qu.:-0.17688  
##  Median :-0.1175   Median : 0.007052   Median :-0.1055   Median :-0.04532  
##  Mean   :-0.0438   Mean   :-0.000272   Mean   :-0.0446   Mean   :-0.00825  
##  3rd Qu.: 0.1067   3rd Qu.: 0.178763   3rd Qu.: 0.1274   3rd Qu.: 0.11346  
##  Max.   : 1.7742   Max.   : 0.978905   Max.   : 1.4812   Max.   : 1.00513  
##  BC 5              
##  Min.   :-1.12270  
##  1st Qu.:-0.14166  
##  Median :-0.03179  
##  Mean   :-0.00744  
##  3rd Qu.: 0.08676  
##  Max.   : 1.05339
plot(fabia_5)

extractPlot(fabia_5)

10 Biclusters

set.seed(42)
fabia_10 = fabia(data.fabia, p = 10)
## Running FABIA on a 701x43 matrix with
##    Number of biclusters ---------------- p: 10
##    Sparseness factor --------------- alpha: 0.01
##    Number of iterations -------------- cyc: 500
##    Loading prior parameter ----------- spl: 0
##    Factor prior parameter ------------ spz: 0.5
##    Initialization loadings--------- random: 1 = interval
##    Nonnegative Loadings and Factors ------: 0 = No
##    Centering ---------------------- center: 2 = median
##    Quantile scaling (0.75-0.25): ---- norm: 1 = Yes
##    Scaling loadings per iteration -- scale: 0 = No
##    Constraint variational parameter -- lap: 1
##    Max. number of biclusters per row -- nL: 0 = no limit
##    Max. number of row elements / biclu. lL: 0 = no limit
## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500
fabia_10

summary(fabia_10)
## 
## An object of class Factorization 
## 
## call:
##  "fabia"
## 
## Number of rows:  701 
## 
## Number of columns:  43 
## 
## Number of clusters:  10 
## 
##  Information content of the clusters:
##    BC 1     BC 2     BC 3     BC 4     BC 5     BC 6     BC 7     BC 8  
##  387.93   383.07   364.12   351.02   340.48   310.16   309.42   263.07  
##    BC 9    BC 10   BC sum  
##  257.00   247.76  2042.63  
## 
## 
## 
##  Information content of the samples:
##   Sample 1    Sample 2    Sample 3    Sample 4    Sample 5    Sample 6  
##      47.34       43.38       48.73       44.55       50.76       48.07  
##   Sample 7    Sample 8    Sample 9   Sample 10   Sample 11   Sample 12  
##      49.56       45.86       44.54       42.41       46.19       54.70  
##  Sample 13   Sample 14   Sample 15   Sample 16   Sample 17   Sample 18  
##      48.04       52.45       49.41       49.54       41.97       46.34  
##  Sample 19   Sample 20   Sample 21   Sample 22   Sample 23   Sample 24  
##      48.22       48.17       54.25       47.59       49.75       46.81  
##  Sample 25   Sample 26   Sample 27   Sample 28   Sample 29   Sample 30  
##      45.25       46.12       51.35       47.55       50.54       45.16  
##  Sample 31   Sample 32   Sample 33   Sample 34   Sample 35   Sample 36  
##      47.97       49.13       42.52       46.02       45.52       47.22  
##  Sample 37   Sample 38   Sample 39   Sample 40   Sample 41   Sample 42  
##      43.37       51.80       48.67       47.73       47.21       48.04  
##  Sample 43  Sample sum  
##      42.80     2042.63  
## 
##  Column clusters / Factors:
##  BC 1             BC 2              BC 3             BC 4             
##  Min.   :-3.189   Min.   :-3.0618   Min.   :-1.503   Min.   :-1.9327  
##  1st Qu.:-0.910   1st Qu.:-0.5063   1st Qu.:-0.368   1st Qu.:-0.8016  
##  Median :-0.407   Median :-0.0828   Median : 0.103   Median :-0.0118  
##  Mean   :-0.455   Mean   :-0.2154   Mean   : 0.114   Mean   :-0.0884  
##  3rd Qu.: 0.145   3rd Qu.: 0.3864   3rd Qu.: 0.422   3rd Qu.: 0.3088  
##  Max.   : 1.369   Max.   : 1.2881   Max.   : 3.149   Max.   : 3.2507  
##  BC 5             BC 6             BC 7               BC 8             
##  Min.   :-2.114   Min.   :-2.452   Min.   :-1.92786   Min.   :-1.5659  
##  1st Qu.:-0.243   1st Qu.:-0.592   1st Qu.:-0.34454   1st Qu.:-0.0286  
##  Median : 0.177   Median :-0.136   Median : 0.00997   Median : 0.2566  
##  Mean   : 0.202   Mean   :-0.264   Mean   : 0.10691   Mean   : 0.4965  
##  3rd Qu.: 0.836   3rd Qu.: 0.300   3rd Qu.: 0.48262   3rd Qu.: 0.8361  
##  Max.   : 2.550   Max.   : 1.439   Max.   : 4.02123   Max.   : 2.6820  
##  BC 9              BC 10            
##  Min.   :-2.7478   Min.   :-2.5045  
##  1st Qu.:-1.0894   1st Qu.:-0.7765  
##  Median :-0.3281   Median :-0.1732  
##  Mean   :-0.3767   Mean   :-0.0917  
##  3rd Qu.: 0.0951   3rd Qu.: 0.6819  
##  Max.   : 2.4931   Max.   : 2.2691  
## 
## 
##  Row clusters / Loadings:
##  BC 1              BC 2              BC 3               BC 4             
##  Min.   :-1.5283   Min.   :-1.5274   Min.   :-1.59487   Min.   :-1.0324  
##  1st Qu.:-0.3225   1st Qu.:-0.2027   1st Qu.:-0.16832   1st Qu.:-0.2720  
##  Median :-0.1135   Median : 0.0547   Median : 0.04653   Median :-0.1071  
##  Mean   :-0.0415   Mean   : 0.0365   Mean   : 0.00894   Mean   :-0.0359  
##  3rd Qu.: 0.1333   3rd Qu.: 0.2764   3rd Qu.: 0.22180   3rd Qu.: 0.0845  
##  Max.   : 1.8945   Max.   : 1.9970   Max.   : 1.51057   Max.   : 1.6811  
##  BC 5              BC 6              BC 7              BC 8             
##  Min.   :-0.9547   Min.   :-0.9944   Min.   :-0.9384   Min.   :-0.8211  
##  1st Qu.:-0.2376   1st Qu.:-0.1689   1st Qu.:-0.1872   1st Qu.:-0.1738  
##  Median :-0.1030   Median :-0.0246   Median :-0.0831   Median :-0.0284  
##  Mean   :-0.0362   Mean   :-0.0141   Mean   :-0.0263   Mean   :-0.0236  
##  3rd Qu.: 0.0457   3rd Qu.: 0.1163   3rd Qu.: 0.0569   3rd Qu.: 0.1310  
##  Max.   : 1.3345   Max.   : 0.8192   Max.   : 1.1191   Max.   : 0.9751  
##  BC 9              BC 10              
##  Min.   :-0.5737   Min.   :-0.863367  
##  1st Qu.:-0.0578   1st Qu.:-0.092216  
##  Median : 0.0428   Median :-0.003182  
##  Mean   : 0.0211   Mean   :-0.000252  
##  3rd Qu.: 0.1373   3rd Qu.: 0.079922  
##  Max.   : 0.5933   Max.   : 0.432566
plot(fabia_10)

extractPlot(fabia_10)

15 Biclusters

set.seed(42)
fabia_15 = fabia(data.fabia, p = 15)
## Running FABIA on a 701x43 matrix with
##    Number of biclusters ---------------- p: 15
##    Sparseness factor --------------- alpha: 0.01
##    Number of iterations -------------- cyc: 500
##    Loading prior parameter ----------- spl: 0
##    Factor prior parameter ------------ spz: 0.5
##    Initialization loadings--------- random: 1 = interval
##    Nonnegative Loadings and Factors ------: 0 = No
##    Centering ---------------------- center: 2 = median
##    Quantile scaling (0.75-0.25): ---- norm: 1 = Yes
##    Scaling loadings per iteration -- scale: 0 = No
##    Constraint variational parameter -- lap: 1
##    Max. number of biclusters per row -- nL: 0 = no limit
##    Max. number of row elements / biclu. lL: 0 = no limit
## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500
fabia_15

summary(fabia_15)
## 
## An object of class Factorization 
## 
## call:
##  "fabia"
## 
## Number of rows:  701 
## 
## Number of columns:  43 
## 
## Number of clusters:  15 
## 
##  Information content of the clusters:
##    BC 1     BC 2     BC 3     BC 4     BC 5     BC 6     BC 7     BC 8  
##  394.79   378.69   365.11   355.21   355.13   346.24   342.25   335.84  
##    BC 9    BC 10    BC 11    BC 12    BC 13    BC 14    BC 15   BC sum  
##  335.46   300.60   299.46   281.38   277.16   225.65   222.22  3139.91  
## 
## 
## 
##  Information content of the samples:
##   Sample 1    Sample 2    Sample 3    Sample 4    Sample 5    Sample 6  
##      70.93       77.43       73.34       69.54       76.60       75.13  
##   Sample 7    Sample 8    Sample 9   Sample 10   Sample 11   Sample 12  
##      79.57       72.95       69.27       69.60       65.57       73.25  
##  Sample 13   Sample 14   Sample 15   Sample 16   Sample 17   Sample 18  
##      65.79       80.62       69.81       72.87       71.03       74.64  
##  Sample 19   Sample 20   Sample 21   Sample 22   Sample 23   Sample 24  
##      77.04       73.72       76.00       75.00       75.60       71.73  
##  Sample 25   Sample 26   Sample 27   Sample 28   Sample 29   Sample 30  
##      72.49       73.37       77.11       76.51       75.70       73.09  
##  Sample 31   Sample 32   Sample 33   Sample 34   Sample 35   Sample 36  
##      72.98       68.34       66.58       76.67       72.04       76.34  
##  Sample 37   Sample 38   Sample 39   Sample 40   Sample 41   Sample 42  
##      69.88       68.95       74.14       74.97       73.63       71.31  
##  Sample 43  Sample sum  
##      68.78     3139.91  
## 
##  Column clusters / Factors:
##  BC 1             BC 2              BC 3              BC 4             
##  Min.   :-1.916   Min.   :-2.3269   Min.   :-3.4879   Min.   :-2.3742  
##  1st Qu.:-0.888   1st Qu.:-1.0460   1st Qu.:-0.1452   1st Qu.:-0.6905  
##  Median :-0.365   Median :-0.0417   Median : 0.0844   Median :-0.0641  
##  Mean   :-0.332   Mean   :-0.3256   Mean   : 0.0692   Mean   :-0.1691  
##  3rd Qu.: 0.011   3rd Qu.: 0.1339   3rd Qu.: 0.5450   3rd Qu.: 0.2589  
##  Max.   : 2.077   Max.   : 1.4538   Max.   : 2.3393   Max.   : 3.0357  
##  BC 5              BC 6              BC 7             BC 8              
##  Min.   :-2.8706   Min.   :-2.5788   Min.   :-2.468   Min.   :-2.42551  
##  1st Qu.:-0.4200   1st Qu.:-0.3792   1st Qu.:-1.013   1st Qu.:-0.45882  
##  Median :-0.0654   Median : 0.0438   Median :-0.294   Median :-0.00706  
##  Mean   :-0.0482   Mean   : 0.1658   Mean   :-0.385   Mean   :-0.20368  
##  3rd Qu.: 0.2973   3rd Qu.: 0.9066   3rd Qu.: 0.195   3rd Qu.: 0.15986  
##  Max.   : 1.9429   Max.   : 2.5065   Max.   : 1.647   Max.   : 1.97105  
##  BC 9              BC 10              BC 11            BC 12            
##  Min.   :-2.7341   Min.   :-2.35252   Min.   :-2.835   Min.   :-2.1565  
##  1st Qu.:-0.9727   1st Qu.:-0.49034   1st Qu.:-0.703   1st Qu.:-0.2094  
##  Median :-0.0806   Median :-0.00388   Median :-0.174   Median : 0.0605  
##  Mean   :-0.3146   Mean   :-0.12009   Mean   :-0.298   Mean   : 0.1359  
##  3rd Qu.: 0.2063   3rd Qu.: 0.15354   3rd Qu.: 0.152   3rd Qu.: 0.5227  
##  Max.   : 1.3940   Max.   : 3.20356   Max.   : 1.834   Max.   : 3.8248  
##  BC 13              BC 14            BC 15             
##  Min.   :-1.91560   Min.   :-2.867   Min.   :-1.70156  
##  1st Qu.:-0.98316   1st Qu.:-0.055   1st Qu.:-0.65302  
##  Median :-0.28577   Median : 0.122   Median :-0.05963  
##  Mean   :-0.33503   Mean   : 0.277   Mean   :-0.00221  
##  3rd Qu.: 0.00351   3rd Qu.: 0.826   3rd Qu.: 0.29792  
##  Max.   : 3.11242   Max.   : 2.687   Max.   : 2.37079  
## 
## 
##  Row clusters / Loadings:
##  BC 1              BC 2              BC 3              BC 4             
##  Min.   :-1.0504   Min.   :-1.2470   Min.   :-1.2199   Min.   :-0.8809  
##  1st Qu.:-0.1843   1st Qu.:-0.2587   1st Qu.:-0.2945   1st Qu.:-0.2370  
##  Median : 0.0612   Median :-0.0911   Median :-0.0913   Median :-0.0959  
##  Mean   : 0.0341   Mean   :-0.0265   Mean   :-0.0396   Mean   :-0.0275  
##  3rd Qu.: 0.2526   3rd Qu.: 0.1328   3rd Qu.: 0.1228   3rd Qu.: 0.0873  
##  Max.   : 1.7213   Max.   : 1.4628   Max.   : 1.5661   Max.   : 1.5371  
##  BC 5              BC 6              BC 7               BC 8             
##  Min.   :-1.0064   Min.   :-0.7066   Min.   :-0.94657   Min.   :-1.3482  
##  1st Qu.:-0.1883   1st Qu.:-0.1945   1st Qu.:-0.16629   1st Qu.:-0.1106  
##  Median :-0.0489   Median :-0.0875   Median :-0.03866   Median : 0.0560  
##  Mean   :-0.0117   Mean   :-0.0276   Mean   :-0.00273   Mean   : 0.0116  
##  3rd Qu.: 0.1155   3rd Qu.: 0.0568   3rd Qu.: 0.13423   3rd Qu.: 0.1994  
##  Max.   : 1.2309   Max.   : 1.1570   Max.   : 0.99173   Max.   : 1.0462  
##  BC 9               BC 10             BC 11              BC 12            
##  Min.   :-1.12991   Min.   :-0.6064   Min.   :-1.49844   Min.   :-0.6899  
##  1st Qu.:-0.15405   1st Qu.:-0.1356   1st Qu.:-0.11331   1st Qu.:-0.1142  
##  Median :-0.00203   Median :-0.0472   Median :-0.01029   Median :-0.0323  
##  Mean   :-0.00824   Mean   :-0.0118   Mean   :-0.00569   Mean   :-0.0108  
##  3rd Qu.: 0.15859   3rd Qu.: 0.0835   3rd Qu.: 0.12788   3rd Qu.: 0.0590  
##  Max.   : 0.81583   Max.   : 2.0599   Max.   : 0.60206   Max.   : 0.6839  
##  BC 13             BC 14             BC 15              
##  Min.   :-0.6255   Min.   :-0.6732   Min.   :-0.495193  
##  1st Qu.:-0.0609   1st Qu.:-0.1214   1st Qu.:-0.071072  
##  Median : 0.0485   Median :-0.0097   Median : 0.000000  
##  Mean   : 0.0208   Mean   :-0.0164   Mean   :-0.000174  
##  3rd Qu.: 0.1361   3rd Qu.: 0.0862   3rd Qu.: 0.077791  
##  Max.   : 0.5030   Max.   : 0.6514   Max.   : 0.499206
plot(fabia_15)

extractPlot(fabia_15)

20 Biclusters

set.seed(42)
fabia_20 = fabia(data.fabia, p = 20)
## Running FABIA on a 701x43 matrix with
##    Number of biclusters ---------------- p: 20
##    Sparseness factor --------------- alpha: 0.01
##    Number of iterations -------------- cyc: 500
##    Loading prior parameter ----------- spl: 0
##    Factor prior parameter ------------ spz: 0.5
##    Initialization loadings--------- random: 1 = interval
##    Nonnegative Loadings and Factors ------: 0 = No
##    Centering ---------------------- center: 2 = median
##    Quantile scaling (0.75-0.25): ---- norm: 1 = Yes
##    Scaling loadings per iteration -- scale: 0 = No
##    Constraint variational parameter -- lap: 1
##    Max. number of biclusters per row -- nL: 0 = no limit
##    Max. number of row elements / biclu. lL: 0 = no limit
## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500
fabia_20

summary(fabia_20)
## 
## An object of class Factorization 
## 
## call:
##  "fabia"
## 
## Number of rows:  701 
## 
## Number of columns:  43 
## 
## Number of clusters:  20 
## 
##  Information content of the clusters:
##    BC 1     BC 2     BC 3     BC 4     BC 5     BC 6     BC 7     BC 8  
##  383.22   379.15   376.76   371.30   361.42   361.14   358.81   356.35  
##    BC 9    BC 10    BC 11    BC 12    BC 13    BC 14    BC 15    BC 16  
##  343.14   343.06   338.18   328.26   323.16   313.68   306.50   295.98  
##   BC 17    BC 18    BC 19    BC 20   BC sum  
##  295.59   289.68   263.29   245.32  4214.90  
## 
## 
## 
##  Information content of the samples:
##   Sample 1    Sample 2    Sample 3    Sample 4    Sample 5    Sample 6  
##     101.35       94.82      101.39       97.12       94.90       96.98  
##   Sample 7    Sample 8    Sample 9   Sample 10   Sample 11   Sample 12  
##      96.91      100.61       89.19       99.00       91.20       95.95  
##  Sample 13   Sample 14   Sample 15   Sample 16   Sample 17   Sample 18  
##      96.39      101.58       95.29      105.09       91.65       94.59  
##  Sample 19   Sample 20   Sample 21   Sample 22   Sample 23   Sample 24  
##      98.58       96.42       95.69       99.18      101.37      102.51  
##  Sample 25   Sample 26   Sample 27   Sample 28   Sample 29   Sample 30  
##     102.05      109.81       97.25       99.56       93.70       98.84  
##  Sample 31   Sample 32   Sample 33   Sample 34   Sample 35   Sample 36  
##      98.72       96.59       93.71       97.11       97.22      102.74  
##  Sample 37   Sample 38   Sample 39   Sample 40   Sample 41   Sample 42  
##      96.19       95.62      103.35      101.38       99.38       98.55  
##  Sample 43  Sample sum  
##      95.37     4214.90  
## 
##  Column clusters / Factors:
##  BC 1             BC 2             BC 3              BC 4             
##  Min.   :-2.735   Min.   :-2.360   Min.   :-1.8212   Min.   :-2.6192  
##  1st Qu.:-0.766   1st Qu.:-0.589   1st Qu.:-0.4238   1st Qu.:-0.3871  
##  Median :-0.147   Median :-0.113   Median : 0.0303   Median : 0.0879  
##  Mean   :-0.242   Mean   :-0.192   Mean   : 0.1725   Mean   : 0.1293  
##  3rd Qu.: 0.259   3rd Qu.: 0.109   3rd Qu.: 0.5678   3rd Qu.: 0.6960  
##  Max.   : 2.421   Max.   : 3.095   Max.   : 2.3854   Max.   : 2.3261  
##  BC 5             BC 6             BC 7              BC 8              
##  Min.   :-3.017   Min.   :-2.908   Min.   :-1.9363   Min.   :-2.86899  
##  1st Qu.:-0.941   1st Qu.:-0.840   1st Qu.:-0.3637   1st Qu.:-0.59021  
##  Median :-0.245   Median :-0.266   Median : 0.0161   Median : 0.00519  
##  Mean   :-0.335   Mean   :-0.394   Mean   :-0.0114   Mean   :-0.24337  
##  3rd Qu.: 0.179   3rd Qu.: 0.108   3rd Qu.: 0.4307   3rd Qu.: 0.25514  
##  Max.   : 2.303   Max.   : 1.384   Max.   : 3.0959   Max.   : 1.73389  
##  BC 9              BC 10             BC 11             BC 12            
##  Min.   :-3.7400   Min.   :-2.2912   Min.   :-3.0778   Min.   :-2.7369  
##  1st Qu.:-0.3450   1st Qu.:-0.7776   1st Qu.:-0.7417   1st Qu.:-0.5369  
##  Median : 0.0725   Median :-0.0372   Median :-0.0544   Median :-0.0691  
##  Mean   : 0.0436   Mean   :-0.1983   Mean   :-0.1040   Mean   :-0.1611  
##  3rd Qu.: 0.2766   3rd Qu.: 0.1494   3rd Qu.: 0.4079   3rd Qu.: 0.2381  
##  Max.   : 4.1706   Max.   : 2.3484   Max.   : 2.4287   Max.   : 1.8789  
##  BC 13             BC 14               BC 15            BC 16            
##  Min.   :-2.3064   Min.   :-2.502186   Min.   :-3.762   Min.   :-2.5878  
##  1st Qu.:-0.5351   1st Qu.:-0.580816   1st Qu.:-0.350   1st Qu.:-0.9786  
##  Median :-0.0304   Median :-0.000861   Median :-0.117   Median :-0.1390  
##  Mean   : 0.0691   Mean   :-0.126482   Mean   :-0.175   Mean   :-0.3331  
##  3rd Qu.: 0.5295   3rd Qu.: 0.219293   3rd Qu.: 0.131   3rd Qu.: 0.0674  
##  Max.   : 2.1168   Max.   : 2.870941   Max.   : 2.484   Max.   : 2.2934  
##  BC 17             BC 18            BC 19              BC 20            
##  Min.   :-1.7606   Min.   :-2.988   Min.   :-2.84955   Min.   :-2.5495  
##  1st Qu.:-0.0398   1st Qu.:-0.508   1st Qu.:-0.15201   1st Qu.:-0.4839  
##  Median : 0.1623   Median :-0.129   Median :-0.02939   Median : 0.0482  
##  Mean   : 0.2915   Mean   :-0.104   Mean   : 0.00188   Mean   :-0.0906  
##  3rd Qu.: 1.0132   3rd Qu.: 0.139   3rd Qu.: 0.31120   3rd Qu.: 0.4134  
##  Max.   : 2.3359   Max.   : 3.111   Max.   : 3.00332   Max.   : 1.7589  
## 
## 
##  Row clusters / Loadings:
##  BC 1              BC 2              BC 3              BC 4             
##  Min.   :-1.1125   Min.   :-1.4967   Min.   :-1.5766   Min.   :-0.8407  
##  1st Qu.:-0.2031   1st Qu.:-0.2475   1st Qu.:-0.0979   1st Qu.:-0.2307  
##  Median : 0.0348   Median :-0.0878   Median : 0.0877   Median :-0.1013  
##  Mean   : 0.0274   Mean   :-0.0223   Mean   : 0.0293   Mean   :-0.0338  
##  3rd Qu.: 0.2380   3rd Qu.: 0.1362   3rd Qu.: 0.2304   3rd Qu.: 0.0522  
##  Max.   : 1.3826   Max.   : 1.5166   Max.   : 1.3754   Max.   : 1.3404  
##  BC 5              BC 6              BC 7               BC 8             
##  Min.   :-0.7402   Min.   :-0.8261   Min.   :-1.59220   Min.   :-1.2644  
##  1st Qu.:-0.2034   1st Qu.:-0.0846   1st Qu.:-0.15237   1st Qu.:-0.2218  
##  Median :-0.0679   Median : 0.0590   Median : 0.00377   Median :-0.0284  
##  Mean   :-0.0206   Mean   : 0.0284   Mean   :-0.00555   Mean   :-0.0183  
##  3rd Qu.: 0.0787   3rd Qu.: 0.1709   3rd Qu.: 0.19000   3rd Qu.: 0.1599  
##  Max.   : 1.3172   Max.   : 0.8948   Max.   : 0.85990   Max.   : 1.0933  
##  BC 9              BC 10              BC 11             BC 12             
##  Min.   :-1.1861   Min.   :-1.11873   Min.   :-1.0970   Min.   :-0.84214  
##  1st Qu.:-0.2131   1st Qu.:-0.13072   1st Qu.:-0.1802   1st Qu.:-0.15000  
##  Median :-0.0563   Median : 0.03644   Median :-0.0404   Median :-0.01345  
##  Mean   :-0.0287   Mean   : 0.00687   Mean   :-0.0128   Mean   :-0.00089  
##  3rd Qu.: 0.1095   3rd Qu.: 0.17869   3rd Qu.: 0.1435   3rd Qu.: 0.13763  
##  Max.   : 1.0816   Max.   : 1.01800   Max.   : 1.1817   Max.   : 1.10283  
##  BC 13              BC 14              BC 15             BC 16            
##  Min.   :-0.80528   Min.   :-0.81134   Min.   :-1.2366   Min.   :-0.9179  
##  1st Qu.:-0.15334   1st Qu.:-0.11257   1st Qu.:-0.0787   1st Qu.:-0.0856  
##  Median :-0.02930   Median :-0.00903   Median : 0.0202   Median : 0.0460  
##  Mean   :-0.00888   Mean   :-0.00226   Mean   : 0.0113   Mean   : 0.0183  
##  3rd Qu.: 0.10401   3rd Qu.: 0.09703   3rd Qu.: 0.1297   3rd Qu.: 0.1417  
##  Max.   : 0.88029   Max.   : 1.02844   Max.   : 0.8138   Max.   : 0.6509  
##  BC 17               BC 18             BC 19              BC 20              
##  Min.   :-8.23e-01   Min.   :-0.7875   Min.   :-0.66656   Min.   :-0.645238  
##  1st Qu.:-1.39e-01   1st Qu.:-0.1150   1st Qu.:-0.09713   1st Qu.:-0.085742  
##  Median : 6.18e-05   Median :-0.0305   Median :-0.01266   Median :-0.007335  
##  Mean   :-1.18e-02   Mean   :-0.0108   Mean   :-0.00606   Mean   : 0.000582  
##  3rd Qu.: 1.14e-01   3rd Qu.: 0.0760   3rd Qu.: 0.08195   3rd Qu.: 0.074128  
##  Max.   : 7.66e-01   Max.   : 0.5840   Max.   : 0.91804   Max.   : 0.489787
plot(fabia_20)

extractPlot(fabia_20)

35 Biclusters

set.seed(42)
fabia_35 = fabia(data.fabia, p = 35)
## Running FABIA on a 701x43 matrix with
##    Number of biclusters ---------------- p: 35
##    Sparseness factor --------------- alpha: 0.01
##    Number of iterations -------------- cyc: 500
##    Loading prior parameter ----------- spl: 0
##    Factor prior parameter ------------ spz: 0.5
##    Initialization loadings--------- random: 1 = interval
##    Nonnegative Loadings and Factors ------: 0 = No
##    Centering ---------------------- center: 2 = median
##    Quantile scaling (0.75-0.25): ---- norm: 1 = Yes
##    Scaling loadings per iteration -- scale: 0 = No
##    Constraint variational parameter -- lap: 1
##    Max. number of biclusters per row -- nL: 0 = no limit
##    Max. number of row elements / biclu. lL: 0 = no limit
## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500
fabia_35

summary(fabia_35)
## 
## An object of class Factorization 
## 
## call:
##  "fabia"
## 
## Number of rows:  701 
## 
## Number of columns:  43 
## 
## Number of clusters:  35 
## 
##  Information content of the clusters:
##     BC 1      BC 2      BC 3      BC 4      BC 5      BC 6      BC 7      BC 8  
##   402.87    399.51    390.43    387.69    383.62    380.55    379.16    378.08  
##     BC 9     BC 10     BC 11     BC 12     BC 13     BC 14     BC 15     BC 16  
##   374.36    373.71    371.89    369.53    368.66    368.07    365.28    359.47  
##    BC 17     BC 18     BC 19     BC 20     BC 21     BC 22     BC 23     BC 24  
##   357.92    357.49    357.23    356.57    353.10    348.67    345.72    343.25  
##    BC 25     BC 26     BC 27     BC 28     BC 29     BC 30     BC 31     BC 32  
##   342.65    342.51    338.98    337.19    337.18    335.90    333.18    332.98  
##    BC 33     BC 34     BC 35    BC sum  
##   329.41    328.28    324.24  10178.08  
## 
## 
## 
##  Information content of the samples:
##   Sample 1    Sample 2    Sample 3    Sample 4    Sample 5    Sample 6  
##     240.33      240.02      235.92      242.36      230.25      228.96  
##   Sample 7    Sample 8    Sample 9   Sample 10   Sample 11   Sample 12  
##     230.38      242.22      228.97      241.84      253.50      248.88  
##  Sample 13   Sample 14   Sample 15   Sample 16   Sample 17   Sample 18  
##     229.10      231.95      246.27      226.49      232.66      245.04  
##  Sample 19   Sample 20   Sample 21   Sample 22   Sample 23   Sample 24  
##     238.40      239.30      231.07      230.04      230.33      238.32  
##  Sample 25   Sample 26   Sample 27   Sample 28   Sample 29   Sample 30  
##     231.66      230.27      236.81      234.33      228.58      250.84  
##  Sample 31   Sample 32   Sample 33   Sample 34   Sample 35   Sample 36  
##     234.66      237.06      245.20      239.87      240.64      244.31  
##  Sample 37   Sample 38   Sample 39   Sample 40   Sample 41   Sample 42  
##     225.51      228.00      235.23      237.40      235.10      227.48  
##  Sample 43  Sample sum  
##     252.52    10178.08  
## 
##  Column clusters / Factors:
##  BC 1              BC 2              BC 3              BC 4              
##  Min.   :-2.4332   Min.   :-2.5237   Min.   :-2.7578   Min.   :-2.33342  
##  1st Qu.:-0.9543   1st Qu.:-0.3692   1st Qu.:-0.7920   1st Qu.:-0.46409  
##  Median :-0.0632   Median : 0.0257   Median :-0.0145   Median : 0.00304  
##  Mean   :-0.2225   Mean   : 0.0573   Mean   :-0.0468   Mean   : 0.01578  
##  3rd Qu.: 0.2009   3rd Qu.: 0.8376   3rd Qu.: 0.6356   3rd Qu.: 0.54876  
##  Max.   : 1.9633   Max.   : 1.9398   Max.   : 2.0777   Max.   : 2.34560  
##  BC 5               BC 6              BC 7             BC 8             
##  Min.   :-3.28233   Min.   :-3.3592   Min.   :-2.301   Min.   :-3.1929  
##  1st Qu.:-0.57805   1st Qu.:-0.6895   1st Qu.:-0.324   1st Qu.:-0.3036  
##  Median : 0.00621   Median :-0.0311   Median : 0.170   Median :-0.0327  
##  Mean   :-0.11077   Mean   :-0.0734   Mean   : 0.173   Mean   : 0.0783  
##  3rd Qu.: 0.27463   3rd Qu.: 0.6098   3rd Qu.: 0.757   3rd Qu.: 0.3341  
##  Max.   : 2.12664   Max.   : 1.7889   Max.   : 2.288   Max.   : 2.8087  
##  BC 9              BC 10             BC 11              BC 12             
##  Min.   :-3.0208   Min.   :-1.3810   Min.   :-1.77855   Min.   :-2.71520  
##  1st Qu.:-0.3729   1st Qu.:-0.6103   1st Qu.:-0.73422   1st Qu.:-0.40927  
##  Median :-0.0138   Median :-0.0366   Median : 0.00656   Median : 0.00491  
##  Mean   : 0.0321   Mean   : 0.1123   Mean   :-0.03841   Mean   :-0.05825  
##  3rd Qu.: 0.2360   3rd Qu.: 0.6631   3rd Qu.: 0.59140   3rd Qu.: 0.59754  
##  Max.   : 3.1153   Max.   : 2.4636   Max.   : 2.01627   Max.   : 2.65525  
##  BC 13             BC 14             BC 15            BC 16           
##  Min.   :-2.6589   Min.   :-3.0597   Min.   :-2.183   Min.   :-2.528  
##  1st Qu.:-0.8846   1st Qu.:-0.6829   1st Qu.:-0.502   1st Qu.:-0.550  
##  Median : 0.0443   Median : 0.0324   Median : 0.115   Median :-0.148  
##  Mean   :-0.1016   Mean   :-0.0234   Mean   : 0.162   Mean   :-0.114  
##  3rd Qu.: 0.4241   3rd Qu.: 0.6210   3rd Qu.: 0.964   3rd Qu.: 0.410  
##  Max.   : 2.2146   Max.   : 2.1064   Max.   : 2.610   Max.   : 2.632  
##  BC 17             BC 18             BC 19             BC 20            
##  Min.   :-3.7358   Min.   :-1.8266   Min.   :-1.7134   Min.   :-2.3496  
##  1st Qu.:-0.3846   1st Qu.:-0.6048   1st Qu.:-0.5988   1st Qu.:-0.5490  
##  Median :-0.0377   Median :-0.0598   Median :-0.0594   Median :-0.0543  
##  Mean   : 0.0210   Mean   :-0.0151   Mean   : 0.0209   Mean   :-0.1585  
##  3rd Qu.: 0.4551   3rd Qu.: 0.3256   3rd Qu.: 0.2653   3rd Qu.: 0.1352  
##  Max.   : 2.3899   Max.   : 3.2428   Max.   : 3.3765   Max.   : 3.6546  
##  BC 21              BC 22             BC 23              BC 24            
##  Min.   :-2.61655   Min.   :-2.3803   Min.   :-2.13532   Min.   :-1.3124  
##  1st Qu.:-0.41404   1st Qu.:-0.5368   1st Qu.:-0.47921   1st Qu.:-0.4981  
##  Median :-0.00814   Median : 0.0540   Median : 0.00733   Median : 0.0578  
##  Mean   :-0.11142   Mean   :-0.0343   Mean   :-0.01423   Mean   : 0.2212  
##  3rd Qu.: 0.43396   3rd Qu.: 0.4495   3rd Qu.: 0.27372   3rd Qu.: 0.8392  
##  Max.   : 2.38082   Max.   : 2.2361   Max.   : 2.42218   Max.   : 2.3765  
##  BC 25             BC 26              BC 27            BC 28            
##  Min.   :-2.0866   Min.   :-2.40805   Min.   :-1.891   Min.   :-2.5307  
##  1st Qu.:-0.7743   1st Qu.:-0.67259   1st Qu.:-0.217   1st Qu.:-0.5734  
##  Median :-0.0366   Median :-0.00518   Median : 0.052   Median :-0.0167  
##  Mean   :-0.1663   Mean   :-0.04131   Mean   : 0.212   Mean   :-0.0572  
##  3rd Qu.: 0.1828   3rd Qu.: 0.35111   3rd Qu.: 0.860   3rd Qu.: 0.4522  
##  Max.   : 1.8651   Max.   : 1.89511   Max.   : 2.637   Max.   : 3.1212  
##  BC 29             BC 30             BC 31             BC 32           
##  Min.   :-1.9588   Min.   :-2.5852   Min.   :-1.9891   Min.   :-2.096  
##  1st Qu.:-0.6729   1st Qu.:-0.6704   1st Qu.:-0.7299   1st Qu.:-0.369  
##  Median :-0.0181   Median : 0.0299   Median : 0.0234   Median : 0.168  
##  Mean   : 0.0138   Mean   :-0.0553   Mean   :-0.0021   Mean   : 0.144  
##  3rd Qu.: 0.5815   3rd Qu.: 0.3985   3rd Qu.: 0.5422   3rd Qu.: 0.623  
##  Max.   : 2.1788   Max.   : 2.3404   Max.   : 2.3423   Max.   : 2.615  
##  BC 33             BC 34             BC 35           
##  Min.   :-2.4848   Min.   :-3.3818   Min.   :-2.923  
##  1st Qu.:-0.5155   1st Qu.:-0.1876   1st Qu.:-0.550  
##  Median : 0.0826   Median : 0.0224   Median : 0.204  
##  Mean   : 0.0100   Mean   : 0.0020   Mean   : 0.157  
##  3rd Qu.: 0.5712   3rd Qu.: 0.5051   3rd Qu.: 0.774  
##  Max.   : 1.7356   Max.   : 2.1831   Max.   : 1.899  
## 
## 
##  Row clusters / Loadings:
##  BC 1              BC 2              BC 3              BC 4              
##  Min.   :-0.7738   Min.   :-0.8174   Min.   :-0.9534   Min.   :-0.83825  
##  1st Qu.:-0.1035   1st Qu.:-0.0849   1st Qu.:-0.0873   1st Qu.:-0.17564  
##  Median : 0.0304   Median : 0.0352   Median : 0.0322   Median :-0.00934  
##  Mean   : 0.0302   Mean   : 0.0133   Mean   : 0.0166   Mean   :-0.01364  
##  3rd Qu.: 0.1671   3rd Qu.: 0.1289   3rd Qu.: 0.1313   3rd Qu.: 0.14935  
##  Max.   : 0.8652   Max.   : 0.9107   Max.   : 0.7274   Max.   : 0.88784  
##  BC 5               BC 6              BC 7              BC 8             
##  Min.   :-0.76893   Min.   :-0.5571   Min.   :-1.0956   Min.   :-0.8844  
##  1st Qu.:-0.13889   1st Qu.:-0.1347   1st Qu.:-0.1361   1st Qu.:-0.0954  
##  Median :-0.02783   Median :-0.0383   Median :-0.0174   Median : 0.0193  
##  Mean   :-0.00636   Mean   :-0.0115   Mean   :-0.0160   Mean   : 0.0110  
##  3rd Qu.: 0.11986   3rd Qu.: 0.0927   3rd Qu.: 0.1103   3rd Qu.: 0.1420  
##  Max.   : 0.72122   Max.   : 0.5539   Max.   : 0.5437   Max.   : 0.7218  
##  BC 9              BC 10              BC 11              BC 12            
##  Min.   :-0.7089   Min.   :-0.68638   Min.   :-0.85304   Min.   :-0.6227  
##  1st Qu.:-0.1433   1st Qu.:-0.12627   1st Qu.:-0.13293   1st Qu.:-0.0616  
##  Median : 0.0210   Median : 0.01975   Median : 0.00965   Median : 0.0481  
##  Mean   : 0.0141   Mean   : 0.00545   Mean   : 0.00324   Mean   : 0.0181  
##  3rd Qu.: 0.1483   3rd Qu.: 0.13470   3rd Qu.: 0.11950   3rd Qu.: 0.1207  
##  Max.   : 0.8268   Max.   : 0.93108   Max.   : 0.57978   Max.   : 0.6490  
##  BC 13              BC 14              BC 15              BC 16              
##  Min.   :-0.60529   Min.   :-0.67980   Min.   :-0.49602   Min.   :-0.799727  
##  1st Qu.:-0.08219   1st Qu.:-0.09174   1st Qu.:-0.07977   1st Qu.:-0.090463  
##  Median : 0.02170   Median :-0.01399   Median : 0.01595   Median : 0.004833  
##  Mean   : 0.00491   Mean   :-0.00226   Mean   : 0.00228   Mean   : 0.000475  
##  3rd Qu.: 0.11981   3rd Qu.: 0.10574   3rd Qu.: 0.10216   3rd Qu.: 0.098669  
##  Max.   : 0.49492   Max.   : 0.60239   Max.   : 0.77706   Max.   : 0.554259  
##  BC 17             BC 18             BC 19               BC 20             
##  Min.   :-0.4833   Min.   :-0.6731   Min.   :-0.689336   Min.   :-0.95088  
##  1st Qu.:-0.1214   1st Qu.:-0.0798   1st Qu.:-0.107650   1st Qu.:-0.12372  
##  Median :-0.0258   Median : 0.0354   Median :-0.003835   Median :-0.00869  
##  Mean   :-0.0156   Mean   : 0.0182   Mean   :-0.000459   Mean   :-0.00705  
##  3rd Qu.: 0.0739   3rd Qu.: 0.1228   3rd Qu.: 0.107175   3rd Qu.: 0.11122  
##  Max.   : 0.5319   Max.   : 0.6953   Max.   : 0.568009   Max.   : 0.81198  
##  BC 21             BC 22              BC 23              BC 24             
##  Min.   :-0.6724   Min.   :-0.81824   Min.   :-0.62220   Min.   :-0.44676  
##  1st Qu.:-0.1190   1st Qu.:-0.09955   1st Qu.:-0.07016   1st Qu.:-0.08265  
##  Median :-0.0299   Median : 0.00689   Median : 0.01878   Median : 0.00199  
##  Mean   :-0.0114   Mean   : 0.00324   Mean   : 0.00983   Mean   :-0.00282  
##  3rd Qu.: 0.0795   3rd Qu.: 0.11853   3rd Qu.: 0.09465   3rd Qu.: 0.07892  
##  Max.   : 0.4739   Max.   : 1.05531   Max.   : 0.62801   Max.   : 0.64499  
##  BC 25              BC 26              BC 27              BC 28            
##  Min.   :-0.58506   Min.   :-0.60382   Min.   :-0.52998   Min.   :-0.8346  
##  1st Qu.:-0.09131   1st Qu.:-0.05691   1st Qu.:-0.09384   1st Qu.:-0.0844  
##  Median : 0.00624   Median : 0.01282   Median :-0.01200   Median : 0.0066  
##  Mean   : 0.01657   Mean   : 0.00467   Mean   :-0.00805   Mean   : 0.0037  
##  3rd Qu.: 0.11823   3rd Qu.: 0.08262   3rd Qu.: 0.08004   3rd Qu.: 0.0982  
##  Max.   : 0.60794   Max.   : 0.55202   Max.   : 0.80631   Max.   : 0.4744  
##  BC 29              BC 30              BC 31              BC 32            
##  Min.   :-0.47967   Min.   :-0.49435   Min.   :-0.65282   Min.   :-0.4813  
##  1st Qu.:-0.07776   1st Qu.:-0.07544   1st Qu.:-0.07118   1st Qu.:-0.0992  
##  Median : 0.00573   Median : 0.00373   Median : 0.01285   Median :-0.0135  
##  Mean   : 0.00101   Mean   : 0.00637   Mean   : 0.00542   Mean   :-0.0127  
##  3rd Qu.: 0.08685   3rd Qu.: 0.09114   3rd Qu.: 0.08379   3rd Qu.: 0.0707  
##  Max.   : 0.57262   Max.   : 0.45010   Max.   : 0.70080   Max.   : 0.7304  
##  BC 33              BC 34              BC 35             
##  Min.   :-0.58776   Min.   :-0.54571   Min.   :-0.41026  
##  1st Qu.:-0.07856   1st Qu.:-0.09141   1st Qu.:-0.07489  
##  Median :-0.00217   Median : 0.00291   Median :-0.00726  
##  Mean   : 0.00330   Mean   : 0.00331   Mean   :-0.00151  
##  3rd Qu.: 0.07558   3rd Qu.: 0.09400   3rd Qu.: 0.06900  
##  Max.   : 0.56413   Max.   : 0.60579   Max.   : 0.52037
plot(fabia_35)

extractPlot(fabia_35)

43 Biclusters (Maximum allowed)

set.seed(42)
fabia_43 = fabia(data.fabia, p = 43)
## Running FABIA on a 701x43 matrix with
##    Number of biclusters ---------------- p: 43
##    Sparseness factor --------------- alpha: 0.01
##    Number of iterations -------------- cyc: 500
##    Loading prior parameter ----------- spl: 0
##    Factor prior parameter ------------ spz: 0.5
##    Initialization loadings--------- random: 1 = interval
##    Nonnegative Loadings and Factors ------: 0 = No
##    Centering ---------------------- center: 2 = median
##    Quantile scaling (0.75-0.25): ---- norm: 1 = Yes
##    Scaling loadings per iteration -- scale: 0 = No
##    Constraint variational parameter -- lap: 1
##    Max. number of biclusters per row -- nL: 0 = no limit
##    Max. number of row elements / biclu. lL: 0 = no limit
## Cycle: 0Cycle: 20Cycle: 40Cycle: 60Cycle: 80Cycle: 100Cycle: 120Cycle: 140Cycle: 160Cycle: 180Cycle: 200Cycle: 220Cycle: 240Cycle: 260Cycle: 280Cycle: 300Cycle: 320Cycle: 340Cycle: 360Cycle: 380Cycle: 400Cycle: 420Cycle: 440Cycle: 460Cycle: 480Cycle: 500
fabia_43

summary(fabia_43)
## 
## An object of class Factorization 
## 
## call:
##  "fabia"
## 
## Number of rows:  701 
## 
## Number of columns:  43 
## 
## Number of clusters:  43 
## 
##  Information content of the clusters:
##     BC 1      BC 2      BC 3      BC 4      BC 5      BC 6      BC 7      BC 8  
##   472.43    458.38    449.98    447.51    445.81    445.17    442.67    442.45  
##     BC 9     BC 10     BC 11     BC 12     BC 13     BC 14     BC 15     BC 16  
##   440.68    440.32    439.92    439.37    438.94    438.56    437.99    435.46  
##    BC 17     BC 18     BC 19     BC 20     BC 21     BC 22     BC 23     BC 24  
##   434.74    434.62    434.42    434.35    432.74    432.71    432.53    432.03  
##    BC 25     BC 26     BC 27     BC 28     BC 29     BC 30     BC 31     BC 32  
##   430.87    430.49    429.14    428.59    427.48    426.58    426.32    425.66  
##    BC 33     BC 34     BC 35     BC 36     BC 37     BC 38     BC 39     BC 40  
##   425.47    424.27    422.22    420.31    418.88    417.76    417.27    416.73  
##    BC 41     BC 42     BC 43    BC sum  
##   412.97    411.79    410.85  17726.71  
## 
## 
## 
##  Information content of the samples:
##   Sample 1    Sample 2    Sample 3    Sample 4    Sample 5    Sample 6  
##     408.67      407.28      407.77      412.76      410.92      409.67  
##   Sample 7    Sample 8    Sample 9   Sample 10   Sample 11   Sample 12  
##     412.87      415.16      414.00      409.84      409.49      414.32  
##  Sample 13   Sample 14   Sample 15   Sample 16   Sample 17   Sample 18  
##     414.49      407.65      415.32      403.31      409.45      421.95  
##  Sample 19   Sample 20   Sample 21   Sample 22   Sample 23   Sample 24  
##     412.10      412.29      412.55      425.12      413.61      409.45  
##  Sample 25   Sample 26   Sample 27   Sample 28   Sample 29   Sample 30  
##     419.75      407.96      411.97      412.11      416.23      410.08  
##  Sample 31   Sample 32   Sample 33   Sample 34   Sample 35   Sample 36  
##     413.64      409.49      413.94      414.85      409.09      416.44  
##  Sample 37   Sample 38   Sample 39   Sample 40   Sample 41   Sample 42  
##     412.77      419.20      406.56      412.77      413.77      407.43  
##  Sample 43  Sample sum  
##     408.66    17726.71  
## 
##  Column clusters / Factors:
##  BC 1              BC 2             BC 3             BC 4            
##  Min.   :-1.6015   Min.   :-2.595   Min.   :-2.029   Min.   :-2.170  
##  1st Qu.:-0.7339   1st Qu.:-1.013   1st Qu.:-0.454   1st Qu.:-0.881  
##  Median : 0.0173   Median :-0.319   Median : 0.195   Median :-0.239  
##  Mean   : 0.1418   Mean   :-0.291   Mean   : 0.202   Mean   :-0.196  
##  3rd Qu.: 0.8842   3rd Qu.: 0.568   3rd Qu.: 0.888   3rd Qu.: 0.436  
##  Max.   : 2.2309   Max.   : 1.480   Max.   : 2.282   Max.   : 1.807  
##  BC 5               BC 6             BC 7              BC 8            
##  Min.   :-2.54556   Min.   :-1.926   Min.   :-1.6595   Min.   :-2.838  
##  1st Qu.:-0.66393   1st Qu.:-0.612   1st Qu.:-0.8440   1st Qu.:-0.729  
##  Median :-0.00947   Median : 0.242   Median :-0.3239   Median :-0.314  
##  Mean   :-0.05322   Mean   : 0.117   Mean   :-0.0954   Mean   :-0.242  
##  3rd Qu.: 0.84185   3rd Qu.: 0.874   3rd Qu.: 0.8340   3rd Qu.: 0.342  
##  Max.   : 1.87706   Max.   : 2.823   Max.   : 1.8158   Max.   : 2.662  
##  BC 9             BC 10             BC 11             BC 12            
##  Min.   :-2.196   Min.   :-2.7106   Min.   :-2.1816   Min.   :-2.1777  
##  1st Qu.:-0.507   1st Qu.:-0.9840   1st Qu.:-0.7676   1st Qu.:-0.5176  
##  Median : 0.374   Median : 0.0149   Median :-0.1319   Median : 0.0423  
##  Mean   : 0.231   Mean   :-0.0972   Mean   :-0.0524   Mean   : 0.1601  
##  3rd Qu.: 0.837   3rd Qu.: 0.7444   3rd Qu.: 0.5015   3rd Qu.: 0.8021  
##  Max.   : 1.917   Max.   : 1.4473   Max.   : 2.1857   Max.   : 2.2124  
##  BC 13             BC 14            BC 15              BC 16           
##  Min.   :-2.1934   Min.   :-1.926   Min.   :-2.14727   Min.   :-2.510  
##  1st Qu.:-0.2586   1st Qu.:-0.799   1st Qu.:-0.64532   1st Qu.:-0.691  
##  Median : 0.0372   Median :-0.102   Median : 0.28978   Median :-0.342  
##  Mean   : 0.1796   Mean   : 0.013   Mean   : 0.00984   Mean   :-0.213  
##  3rd Qu.: 0.7311   3rd Qu.: 0.761   3rd Qu.: 0.66288   3rd Qu.: 0.541  
##  Max.   : 2.7310   Max.   : 1.737   Max.   : 1.95586   Max.   : 1.866  
##  BC 17            BC 18            BC 19             BC 20           
##  Min.   :-2.117   Min.   :-2.446   Min.   :-2.9971   Min.   :-2.120  
##  1st Qu.:-0.666   1st Qu.:-0.631   1st Qu.:-0.5670   1st Qu.:-0.653  
##  Median :-0.160   Median :-0.145   Median :-0.0788   Median :-0.171  
##  Mean   :-0.168   Mean   :-0.146   Mean   :-0.1825   Mean   :-0.169  
##  3rd Qu.: 0.412   3rd Qu.: 0.499   3rd Qu.: 0.3944   3rd Qu.: 0.408  
##  Max.   : 1.946   Max.   : 2.513   Max.   : 1.4587   Max.   : 2.391  
##  BC 21             BC 22             BC 23            BC 24            
##  Min.   :-2.0739   Min.   :-2.6253   Min.   :-3.186   Min.   :-1.4523  
##  1st Qu.:-0.6618   1st Qu.:-0.7186   1st Qu.:-0.696   1st Qu.:-0.6497  
##  Median : 0.0312   Median :-0.0387   Median :-0.129   Median :-0.0324  
##  Mean   : 0.0343   Mean   :-0.1304   Mean   :-0.149   Mean   : 0.1216  
##  3rd Qu.: 0.6416   3rd Qu.: 0.5945   3rd Qu.: 0.409   3rd Qu.: 0.7436  
##  Max.   : 3.0818   Max.   : 2.0102   Max.   : 2.252   Max.   : 2.5177  
##  BC 25            BC 26              BC 27            BC 28           
##  Min.   :-2.271   Min.   :-2.54691   Min.   :-2.591   Min.   :-1.748  
##  1st Qu.:-0.462   1st Qu.:-0.68293   1st Qu.:-0.362   1st Qu.:-0.785  
##  Median : 0.097   Median : 0.02035   Median : 0.232   Median :-0.136  
##  Mean   : 0.101   Mean   :-0.00458   Mean   : 0.179   Mean   :-0.127  
##  3rd Qu.: 0.794   3rd Qu.: 0.64112   3rd Qu.: 0.861   3rd Qu.: 0.226  
##  Max.   : 1.944   Max.   : 2.15439   Max.   : 2.092   Max.   : 3.726  
##  BC 29             BC 30             BC 31             BC 32            
##  Min.   :-2.3069   Min.   :-2.6445   Min.   :-2.1011   Min.   :-2.8107  
##  1st Qu.:-0.7992   1st Qu.:-0.8924   1st Qu.:-0.5294   1st Qu.:-0.4781  
##  Median : 0.0790   Median :-0.0763   Median :-0.0369   Median :-0.0094  
##  Mean   :-0.0256   Mean   :-0.0979   Mean   :-0.0381   Mean   : 0.0825  
##  3rd Qu.: 0.7644   3rd Qu.: 0.7137   3rd Qu.: 0.5417   3rd Qu.: 0.7130  
##  Max.   : 1.7727   Max.   : 1.6595   Max.   : 2.9066   Max.   : 2.5498  
##  BC 33            BC 34             BC 35             BC 36            
##  Min.   :-1.857   Min.   :-3.0063   Min.   :-2.1260   Min.   :-1.8860  
##  1st Qu.:-0.485   1st Qu.:-0.3986   1st Qu.:-0.7310   1st Qu.:-0.5552  
##  Median : 0.132   Median : 0.0525   Median :-0.1530   Median : 0.0407  
##  Mean   : 0.212   Mean   :-0.0165   Mean   :-0.0586   Mean   : 0.0555  
##  3rd Qu.: 0.725   3rd Qu.: 0.6710   3rd Qu.: 0.4819   3rd Qu.: 0.7017  
##  Max.   : 3.197   Max.   : 2.0282   Max.   : 2.7057   Max.   : 2.7109  
##  BC 37             BC 38             BC 39             BC 40            
##  Min.   :-3.0255   Min.   :-2.9208   Min.   :-2.5604   Min.   :-2.7057  
##  1st Qu.:-0.3234   1st Qu.:-0.5739   1st Qu.:-0.9120   1st Qu.:-0.7262  
##  Median : 0.0102   Median :-0.0665   Median : 0.0505   Median : 0.1396  
##  Mean   : 0.0473   Mean   :-0.0994   Mean   :-0.1076   Mean   :-0.0459  
##  3rd Qu.: 0.7891   3rd Qu.: 0.5995   3rd Qu.: 0.4200   3rd Qu.: 0.6363  
##  Max.   : 2.0081   Max.   : 1.6334   Max.   : 2.6550   Max.   : 1.9338  
##  BC 41             BC 42             BC 43            
##  Min.   :-2.8348   Min.   :-2.4230   Min.   :-2.2582  
##  1st Qu.:-0.5771   1st Qu.:-0.3345   1st Qu.:-0.3830  
##  Median :-0.0398   Median :-0.0382   Median :-0.0385  
##  Mean   :-0.0296   Mean   : 0.1638   Mean   : 0.0141  
##  3rd Qu.: 0.5908   3rd Qu.: 0.6354   3rd Qu.: 0.4220  
##  Max.   : 2.1901   Max.   : 2.5478   Max.   : 3.4097  
## 
## 
##  Row clusters / Loadings:
##  BC 1               BC 2              BC 3               BC 4              
##  Min.   :-0.57874   Min.   :-0.5491   Min.   :-0.41277   Min.   :-0.89219  
##  1st Qu.:-0.08233   1st Qu.:-0.0570   1st Qu.:-0.05284   1st Qu.:-0.08461  
##  Median : 0.02141   Median : 0.0137   Median : 0.00714   Median :-0.00201  
##  Mean   : 0.00692   Mean   : 0.0158   Mean   : 0.00485   Mean   :-0.00144  
##  3rd Qu.: 0.11103   3rd Qu.: 0.0849   3rd Qu.: 0.06082   3rd Qu.: 0.08393  
##  Max.   : 0.73985   Max.   : 0.4196   Max.   : 0.65968   Max.   : 0.52727  
##  BC 5               BC 6               BC 7               BC 8              
##  Min.   :-0.60102   Min.   :-0.40640   Min.   :-0.45718   Min.   :-0.59008  
##  1st Qu.:-0.05461   1st Qu.:-0.06678   1st Qu.:-0.06024   1st Qu.:-0.05796  
##  Median : 0.02154   Median : 0.00421   Median : 0.00449   Median : 0.00698  
##  Mean   : 0.00864   Mean   : 0.00262   Mean   : 0.00408   Mean   : 0.00241  
##  3rd Qu.: 0.07801   3rd Qu.: 0.06581   3rd Qu.: 0.06862   3rd Qu.: 0.06561  
##  Max.   : 0.53390   Max.   : 0.37051   Max.   : 0.45769   Max.   : 0.46290  
##  BC 9                BC 10              BC 11              BC 12             
##  Min.   :-0.391190   Min.   :-0.40812   Min.   :-0.44405   Min.   :-0.69878  
##  1st Qu.:-0.059742   1st Qu.:-0.06239   1st Qu.:-0.07761   1st Qu.:-0.07322  
##  Median : 0.006454   Median : 0.00868   Median :-0.01163   Median :-0.00152  
##  Mean   :-0.000185   Mean   : 0.00718   Mean   :-0.00474   Mean   :-0.00784  
##  3rd Qu.: 0.065422   3rd Qu.: 0.07419   3rd Qu.: 0.05864   3rd Qu.: 0.06793  
##  Max.   : 0.532597   Max.   : 0.40028   Max.   : 0.42520   Max.   : 0.42652  
##  BC 13              BC 14              BC 15             BC 16             
##  Min.   :-0.44947   Min.   :-0.36248   Min.   :-0.4086   Min.   :-0.43537  
##  1st Qu.:-0.07024   1st Qu.:-0.06572   1st Qu.:-0.0510   1st Qu.:-0.05715  
##  Median : 0.00111   Median : 0.01357   Median : 0.0179   Median : 0.00353  
##  Mean   : 0.00291   Mean   : 0.00379   Mean   : 0.0084   Mean   : 0.00654  
##  3rd Qu.: 0.07443   3rd Qu.: 0.07225   3rd Qu.: 0.0642   3rd Qu.: 0.06871  
##  Max.   : 0.45466   Max.   : 0.41529   Max.   : 0.4007   Max.   : 0.51561  
##  BC 17              BC 18               BC 19              BC 20             
##  Min.   :-0.41406   Min.   :-0.629613   Min.   :-0.63729   Min.   :-0.33772  
##  1st Qu.:-0.05266   1st Qu.:-0.077332   1st Qu.:-0.07303   1st Qu.:-0.05481  
##  Median : 0.01263   Median :-0.000412   Median :-0.00240   Median : 0.00987  
##  Mean   : 0.00213   Mean   :-0.003064   Mean   :-0.00108   Mean   : 0.01268  
##  3rd Qu.: 0.06803   3rd Qu.: 0.068399   3rd Qu.: 0.07442   3rd Qu.: 0.07807  
##  Max.   : 0.39803   Max.   : 0.520355   Max.   : 0.44143   Max.   : 0.40074  
##  BC 21             BC 22               BC 23              BC 24            
##  Min.   :-0.3970   Min.   :-0.487066   Min.   :-0.41347   Min.   :-0.3712  
##  1st Qu.:-0.0585   1st Qu.:-0.066208   1st Qu.:-0.07631   1st Qu.:-0.0797  
##  Median : 0.0194   Median :-0.003322   Median :-0.00287   Median :-0.0130  
##  Mean   : 0.0104   Mean   : 0.000977   Mean   :-0.00229   Mean   :-0.0114  
##  3rd Qu.: 0.0818   3rd Qu.: 0.066853   3rd Qu.: 0.06807   3rd Qu.: 0.0511  
##  Max.   : 0.4354   Max.   : 0.391323   Max.   : 0.45194   Max.   : 0.3312  
##  BC 25              BC 26              BC 27             BC 28             
##  Min.   :-0.41234   Min.   :-0.37424   Min.   :-0.3661   Min.   :-0.45316  
##  1st Qu.:-0.05760   1st Qu.:-0.06394   1st Qu.:-0.0692   1st Qu.:-0.05082  
##  Median : 0.01065   Median : 0.00776   Median :-0.0119   Median : 0.00772  
##  Mean   : 0.00246   Mean   : 0.00160   Mean   :-0.0096   Mean   : 0.00456  
##  3rd Qu.: 0.05838   3rd Qu.: 0.06065   3rd Qu.: 0.0509   3rd Qu.: 0.06762  
##  Max.   : 0.45614   Max.   : 0.42619   Max.   : 0.3875   Max.   : 0.51087  
##  BC 29              BC 30              BC 31               BC 32             
##  Min.   :-0.45688   Min.   :-0.35264   Min.   :-0.474413   Min.   :-0.47171  
##  1st Qu.:-0.04651   1st Qu.:-0.05341   1st Qu.:-0.050898   1st Qu.:-0.05937  
##  Median : 0.01390   Median : 0.01023   Median : 0.003517   Median :-0.00131  
##  Mean   : 0.00603   Mean   : 0.00284   Mean   : 0.000253   Mean   : 0.00095  
##  3rd Qu.: 0.06486   3rd Qu.: 0.05901   3rd Qu.: 0.052240   3rd Qu.: 0.05286  
##  Max.   : 0.41573   Max.   : 0.31738   Max.   : 0.368727   Max.   : 0.35039  
##  BC 33             BC 34              BC 35              BC 36             
##  Min.   :-0.4475   Min.   :-0.46650   Min.   :-0.39517   Min.   :-0.43558  
##  1st Qu.:-0.0655   1st Qu.:-0.07821   1st Qu.:-0.04894   1st Qu.:-0.06146  
##  Median :-0.0159   Median : 0.00316   Median : 0.00644   Median :-0.00774  
##  Mean   :-0.0103   Mean   : 0.00180   Mean   : 0.00412   Mean   :-0.00586  
##  3rd Qu.: 0.0384   3rd Qu.: 0.07319   3rd Qu.: 0.06438   3rd Qu.: 0.04410  
##  Max.   : 0.4070   Max.   : 0.56378   Max.   : 0.29570   Max.   : 0.50803  
##  BC 37              BC 38               BC 39              BC 40              
##  Min.   :-0.34818   Min.   :-0.517118   Min.   :-0.34873   Min.   :-4.01e-01  
##  1st Qu.:-0.05360   1st Qu.:-0.048567   1st Qu.:-0.05611   1st Qu.:-4.55e-02  
##  Median :-0.00416   Median : 0.004237   Median :-0.01241   Median :-3.98e-03  
##  Mean   :-0.00183   Mean   : 0.000285   Mean   :-0.00506   Mean   :-3.72e-05  
##  3rd Qu.: 0.04841   3rd Qu.: 0.058465   3rd Qu.: 0.04869   3rd Qu.: 5.03e-02  
##  Max.   : 0.30242   Max.   : 0.384646   Max.   : 0.27256   Max.   : 3.21e-01  
##  BC 41               BC 42               BC 43            
##  Min.   :-0.567878   Min.   :-3.55e-01   Min.   :-0.4500  
##  1st Qu.:-0.043734   1st Qu.:-5.33e-02   1st Qu.:-0.0766  
##  Median : 0.000862   Median :-3.59e-05   Median :-0.0159  
##  Mean   : 0.004638   Mean   :-1.93e-03   Mean   :-0.0074  
##  3rd Qu.: 0.056179   3rd Qu.: 4.57e-02   3rd Qu.: 0.0657  
##  Max.   : 0.299498   Max.   : 5.67e-01   Max.   : 0.3720
plot(fabia_43)

extractPlot(fabia_43)

fabia_results = list("1bc" = fabia_1,
                     "2bc" = fabia_2,
                     "3bc" = fabia_3,
                     "5bc" = fabia_5,
                     "10bc" = fabia_10,
                     "15bc" = fabia_15,
                     "20bc" = fabia_20,
                     "35bc" = fabia_35,
                     "43bc" = fabia_43)

saveRDS(fabia_results, file = "data/out_models/results_fabia.rds")

2. Meta Data Exploration

data.horizontal = readRDS("data/derived/data_horizontal.rds")
meta.data = data.horizontal$colData.selected

A. Bicluster Loading & Metadata

bind.Z.meta = function(fabia.result) {
  Z.df = as.data.frame(t(as.matrix(fabia.result@Z)))
  if (identical(rownames(Z.df), rownames(meta.data))) {
    return(cbind(Z.df, meta.data))
  } else {
    stop("Z and Meta Data Sample names mismatched!")
  }
}

1 Bicluster

#Z.df = as.data.frame(t(as.matrix(fabia_1@Z)))
#identical(rownames(Z.df), rownames(meta.data))
#df.Zmeta = cbind(Z.df, meta.data)
#plot(as.data.frame(t(as.matrix(fabia_1@Z))))

Death/Survival time:

ggplot(data = bind.Z.meta(fabia_1), aes(x = patientID, y = bicluster1, color = event_time)) +
  geom_point() +
  scale_color_gradient(low = 'green', high = 'red') +
  scale_x_discrete(guide = guide_axis(angle = 90)) +
  ggtitle("Biscluster scores of patientIDs \n(1-Bicuster FABIA)") +
  theme(plot.title = element_text(hjust = 0.5))

Vital Status:

ggplot(data = bind.Z.meta(fabia_1), aes(x = patientID, y = bicluster1, color = vital_status)) +
  geom_point() +
  scale_color_manual(values = c("blue","red")) +
  scale_x_discrete(guide = guide_axis(angle = 90)) +
  ggtitle("Biscluster scores of patientIDs \n(1-Bicuster FABIA)") +
  theme(plot.title = element_text(hjust = 0.5))

2 Biclusters

Death/Survival time:

ggplot(data = bind.Z.meta(fabia_2), aes(x = patientID, y = bicluster1, color = event_time)) +
  geom_point() +
  scale_color_gradient(low = 'green', high = 'red') +
  scale_x_discrete(guide = guide_axis(angle = 90)) +
  ggtitle("Biscluster scores of patientIDs \n(2-Bicusters FABIA)") +
  theme(plot.title = element_text(hjust = 0.5))

ggplot(data = bind.Z.meta(fabia_2), aes(x = patientID, y = bicluster2, color = event_time)) +
  geom_point() +
  scale_color_gradient(low = 'green', high = 'red') +
  scale_x_discrete(guide = guide_axis(angle = 90)) +
  ggtitle("Biscluster scores of patientIDs \n(2-Bicusters FABIA)") +
  theme(plot.title = element_text(hjust = 0.5))

Vital Status:

ggplot(data = bind.Z.meta(fabia_2), aes(x = patientID, y = bicluster1, color = vital_status)) +
  geom_point() +
  scale_color_manual(values = c("blue","red")) +
  scale_x_discrete(guide = guide_axis(angle = 90)) +
  ggtitle("Biscluster scores of patientIDs \n(2-Bicusters FABIA)") +
  theme(plot.title = element_text(hjust = 0.5))

ggplot(data = bind.Z.meta(fabia_2), aes(x = patientID, y = bicluster2, color = vital_status)) +
  geom_point() +
  scale_color_manual(values = c("blue","red")) +
  scale_x_discrete(guide = guide_axis(angle = 90)) +
  ggtitle("Biscluster scores of patientIDs \n(2-Bicusters FABIA)") +
  theme(plot.title = element_text(hjust = 0.5))

3 Biclusters

Death/Survival time:

ggplot(data = bind.Z.meta(fabia_3), aes(x = patientID, y = bicluster1, color = event_time)) +
  geom_point() +
  scale_color_gradient(low = 'green', high = 'red') +
  scale_x_discrete(guide = guide_axis(angle = 90)) +
  ggtitle("Biscluster scores of patientIDs \n(3-Bicusters FABIA)") +
  theme(plot.title = element_text(hjust = 0.5))

ggplot(data = bind.Z.meta(fabia_3), aes(x = patientID, y = bicluster2, color = event_time)) +
  geom_point() +
  scale_color_gradient(low = 'green', high = 'red') +
  scale_x_discrete(guide = guide_axis(angle = 90)) +
  ggtitle("Biscluster scores of patientIDs \n(3-Bicusters FABIA)") +
  theme(plot.title = element_text(hjust = 0.5))

ggplot(data = bind.Z.meta(fabia_3), aes(x = patientID, y = bicluster3, color = event_time)) +
  geom_point() +
  scale_color_gradient(low = 'green', high = 'red') +
  scale_x_discrete(guide = guide_axis(angle = 90)) +
  ggtitle("Biscluster scores of patientIDs \n(3-Bicusters FABIA)") +
  theme(plot.title = element_text(hjust = 0.5))

Vital Status:

ggplot(data = bind.Z.meta(fabia_3), aes(x = patientID, y = bicluster1, color = vital_status)) +
  geom_point() +
  scale_color_manual(values = c("blue","red")) +
  scale_x_discrete(guide = guide_axis(angle = 90)) +
  ggtitle("Biscluster scores of patientIDs \n(3-Bicusters FABIA)") +
  theme(plot.title = element_text(hjust = 0.5))

ggplot(data = bind.Z.meta(fabia_3), aes(x = patientID, y = bicluster2, color = vital_status)) +
  geom_point() +
  scale_color_manual(values = c("blue","red")) +
  scale_x_discrete(guide = guide_axis(angle = 90)) +
  ggtitle("Biscluster scores of patientIDs \n(3-Bicusters FABIA)") +
  theme(plot.title = element_text(hjust = 0.5))

ggplot(data = bind.Z.meta(fabia_3), aes(x = patientID, y = bicluster3, color = vital_status)) +
  geom_point() +
  scale_color_manual(values = c("blue","red")) +
  scale_x_discrete(guide = guide_axis(angle = 90)) +
  ggtitle("Biscluster scores of patientIDs \n(3-Bicusters FABIA)") +
  theme(plot.title = element_text(hjust = 0.5))

3. Results comparison

A. Average information content per bicluster

info.content = data.frame(
  biclusters = c(1,2,3,5,10,15,20,35,43),
  info.sum = c(fabia_1@avini[2], 
             fabia_2@avini[3],
             fabia_3@avini[4],
             fabia_5@avini[6],
             fabia_10@avini[11],
             fabia_15@avini[16],
             fabia_20@avini[21],
             fabia_35@avini[36],
             fabia_43@avini[44])
)
info.content$info.avg = info.content$info.sum/info.content$biclusters
plot(info.content$biclusters, info.content$info.avg)

#ggplot(data = BCs, aes(x = biclusters))

B. Top n% features of each Bicluster

top_x_percent = function(fabia.result, perct = 5, print = T, show.loading = F) {
  quantile = 1 - perct * 0.01
  fabia_L = fabia.result@L
  
  out.list = vector("list", length = ncol(fabia_L))
  names(out.list) = colnames(fabia_L)
  
  for (i in 1:ncol(fabia_L)) {
    L_curr = fabia_L[,i]
    quant = quantile(abs(L_curr), quantile)
    sel = abs(L_curr) >= quant
    out.list[[i]] = L_curr[sel]
    
    if(print) {
      print(colnames(fabia_L)[i])
      if (show.loading) {
        print(L_curr[sel])
      } else {
        print(names(L_curr[sel]))
      }
    }
  }
  
  out.list
}

#boxplot(fabia_1@L)

Top 5%

f1_5 = top_x_percent(fabia_1)
## [1] "bicluster1"
##  [1] "G6PD.RPPA"      "TGM2.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2"
##  [5] "hsa-mir-1197"   "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"   
##  [9] "hsa-mir-154"    "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [13] "hsa-mir-329-2"  "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [17] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-382"   
## [21] "hsa-mir-409"    "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-485"   
## [25] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-541"   
## [29] "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [33] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"    "hsa-mir-889"
f2_5 = top_x_percent(fabia_2)
## [1] "bicluster2"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "TGM2.R2Gn"      "hsa-mir-1185-1"
##  [5] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-323"    "hsa-mir-329-1" 
##  [9] "hsa-mir-329-2"  "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [13] "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-411"    "hsa-mir-433"   
## [17] "hsa-mir-466"    "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-506"   
## [21] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-510"    "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [29] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-541"    "hsa-mir-655"   
## [33] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"   
## [1] "bicluster1"
##  [1] "FN1.R2Gn"       "CTNNB1.R2Gn"    "CCND1.R2Gn"     "hsa-mir-1185-1"
##  [5] "hsa-mir-1185-2" "hsa-mir-135b"   "hsa-mir-206"    "hsa-mir-3166"  
##  [9] "hsa-mir-3199-1" "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-376a-2"
## [13] "hsa-mir-380"    "hsa-mir-3923"   "hsa-mir-411"    "hsa-mir-433"   
## [17] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-506"   
## [21] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [25] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [29] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [33] "hsa-mir-543"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"
f3_5 = top_x_percent(fabia_3)
## [1] "bicluster2"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "TTF1.RPPA"      "TGM2.R2Gn"     
##  [5] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1197"   "hsa-mir-329-1" 
##  [9] "hsa-mir-329-2"  "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-377"   
## [13] "hsa-mir-380"    "hsa-mir-466"    "hsa-mir-487a"   "hsa-mir-506"   
## [17] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [21] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [25] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [29] "hsa-mir-514-3"  "hsa-mir-541"    "hsa-mir-605"    "hsa-mir-655"   
## [33] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"   
## [1] "bicluster3"
##  [1] "GATA3.RPPA"     "IGFBP2.R2Gn"    "FN1.R2Gn"       "CTNNB1.R2Gn"   
##  [5] "CCND1.R2Gn"     "hsa-mir-1185-1" "hsa-mir-124-3"  "hsa-mir-135b"  
##  [9] "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-3166"   "hsa-mir-3199-1"
## [13] "hsa-mir-3655"   "hsa-mir-3923"   "hsa-mir-3926-2" "hsa-mir-411"   
## [17] "hsa-mir-429"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-506"   
## [21] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [25] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [29] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [33] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-582"    "hsa-mir-656"   
## [1] "bicluster1"
##  [1] "CTNNB1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
##  [5] "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"   
##  [9] "hsa-mir-206"    "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"  
## [13] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-370"    "hsa-mir-376a-1"
## [17] "hsa-mir-376a-2" "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-380"   
## [21] "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-411"    "hsa-mir-433"   
## [25] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-496"   
## [29] "hsa-mir-517a"   "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-654"   
## [33] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-889"
f5_5 = top_x_percent(fabia_5)
## [1] "bicluster2"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "TGM2.R2Gn"      "hsa-mir-1185-1"
##  [5] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-127"    "hsa-mir-134"   
##  [9] "hsa-mir-154"    "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [13] "hsa-mir-329-2"  "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [17] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-382"   
## [21] "hsa-mir-409"    "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-485"   
## [25] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-541"   
## [29] "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [33] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster5"
##  [1] "RBM15.RPPA"     "GATA3.RPPA"     "FASN.RPPA"      "VHL.RPPA"      
##  [5] "FN1.R2Gn"       "CDH2.R2Gn"      "GATA3.R2Gn"     "CTNNB1.R2Gn"   
##  [9] "CCND1.R2Gn"     "hsa-mir-124-3"  "hsa-mir-1258"   "hsa-mir-135b"  
## [13] "hsa-mir-139"    "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-3166"  
## [17] "hsa-mir-3199-1" "hsa-mir-3655"   "hsa-mir-3923"   "hsa-mir-3926-2"
## [21] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [25] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [29] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [33] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-605"   
## [1] "bicluster1"
##  [1] "FASN.RPPA"      "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
##  [5] "hsa-mir-323"    "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-376a-1"
##  [9] "hsa-mir-376a-2" "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-431"   
## [13] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-466"    "hsa-mir-487a"  
## [17] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [21] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [29] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-541"    "hsa-mir-655"   
## [33] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"   
## [1] "bicluster4"
##  [1] "G6PD.RPPA"      "GATA3.RPPA"     "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [5] "CCND1.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1269"  
##  [9] "hsa-mir-135b"   "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-3166"  
## [13] "hsa-mir-329-1"  "hsa-mir-3655"   "hsa-mir-377"    "hsa-mir-3923"  
## [17] "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-485"    "hsa-mir-487a"  
## [21] "hsa-mir-494"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [25] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [29] "hsa-mir-513a-2" "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [33] "hsa-mir-514b"   "hsa-mir-543"    "hsa-mir-655"    "hsa-mir-656"   
## [1] "bicluster3"
##  [1] "CTNNB1.R2Gn"    "TGM2.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2"
##  [5] "hsa-mir-1197"   "hsa-mir-206"    "hsa-mir-323"    "hsa-mir-323b"  
##  [9] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-370"    "hsa-mir-376a-1"
## [13] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-409"   
## [17] "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"  
## [21] "hsa-mir-494"    "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1"
## [25] "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-519a-2" "hsa-mir-520a"  
## [29] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"   
## [33] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"
f10_5 = top_x_percent(fabia_10)
## [1] "bicluster9"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "TGM2.R2Gn"      "hsa-mir-1185-1"
##  [5] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-127"    "hsa-mir-134"   
##  [9] "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-323"    "hsa-mir-323b"  
## [13] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-370"    "hsa-mir-376a-1"
## [17] "hsa-mir-376a-2" "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-380"   
## [21] "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-411"    "hsa-mir-485"   
## [25] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-541"   
## [29] "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [33] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"    "hsa-mir-876"   
## [1] "bicluster10"
##  [1] "FASN.RPPA"      "TTF1.RPPA"      "VHL.RPPA"       "IGFBP2.R2Gn"   
##  [5] "FASN.R2Gn"      "CTNNB1.R2Gn"    "PIK3R1.R2Gn"    "hsa-mir-1193"  
##  [9] "hsa-mir-1258"   "hsa-mir-2114"   "hsa-mir-329-2"  "hsa-mir-380"   
## [13] "hsa-mir-3909"   "hsa-mir-3922"   "hsa-mir-3926-2" "hsa-mir-466"   
## [17] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [21] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [29] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-605"   
## [33] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-770"    "hsa-mir-876"   
## [1] "bicluster7"
##  [1] "GATA3.RPPA"     "FN1.R2Gn"       "GATA3.R2Gn"     "CTNNB1.R2Gn"   
##  [5] "CCND1.R2Gn"     "hsa-mir-1185-1" "hsa-mir-135b"   "hsa-mir-206"   
##  [9] "hsa-mir-2114"   "hsa-mir-296"    "hsa-mir-3166"   "hsa-mir-3199-1"
## [13] "hsa-mir-320c-2" "hsa-mir-3655"   "hsa-mir-3923"   "hsa-mir-3926-2"
## [17] "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-485"    "hsa-mir-487a"  
## [21] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [25] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [29] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [33] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-656"   
## [1] "bicluster2"
##  [1] "G6PD.RPPA"      "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
##  [5] "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"   
##  [9] "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [13] "hsa-mir-329-2"  "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [17] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"   
## [21] "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-411"    "hsa-mir-433"   
## [25] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-496"   
## [29] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"   
## [33] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster1"
##  [1] "FN1.R2Gn"       "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
##  [5] "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"   
##  [9] "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [13] "hsa-mir-329-2"  "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [17] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"   
## [21] "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-411"    "hsa-mir-433"   
## [25] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-496"   
## [29] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"   
## [33] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"   
## [1] "bicluster3"
##  [1] "FASN.RPPA"      "TGM2.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2"
##  [5] "hsa-mir-1197"   "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
##  [9] "hsa-mir-376a-1" "hsa-mir-380"    "hsa-mir-433"    "hsa-mir-487a"  
## [13] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [17] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [21] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [25] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-516a-1"
## [29] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [33] "hsa-mir-541"    "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-770"   
## [1] "bicluster8"
##  [1] "G6PD.RPPA"      "ERBB3.R2Gn"     "TGM2.R2Gn"      "hsa-mir-1185-1"
##  [5] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-136"    "hsa-mir-154"   
##  [9] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [13] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-377"   
## [17] "hsa-mir-380"    "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-411"   
## [21] "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"  
## [25] "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-517a"   "hsa-mir-541"   
## [29] "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [33] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster6"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "FASN.RPPA"      "VHL.RPPA"      
##  [5] "GAPDH.RPPA"     "MSH6.RPPA"      "CDH2.R2Gn"      "EEF2.R2Gn"     
##  [9] "SQSTM1.R2Gn"    "hsa-mir-1193"   "hsa-mir-124-3"  "hsa-mir-1258"  
## [13] "hsa-mir-1270-1" "hsa-mir-3926-2" "hsa-mir-3934"   "hsa-mir-466"   
## [17] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [21] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [29] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-548v"  
## [33] "hsa-mir-552"    "hsa-mir-592"    "hsa-mir-605"    "hsa-mir-653"   
## [1] "bicluster5"
##  [1] "CDH2.R2Gn"      "CTNNB1.R2Gn"    "CCND1.R2Gn"     "hsa-mir-1185-1"
##  [5] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-1269"   "hsa-mir-127"   
##  [9] "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-323"    "hsa-mir-323b"  
## [13] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-370"    "hsa-mir-376a-1"
## [17] "hsa-mir-376a-2" "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-410"   
## [21] "hsa-mir-411"    "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-485"   
## [25] "hsa-mir-487a"   "hsa-mir-488"    "hsa-mir-494"    "hsa-mir-495"   
## [29] "hsa-mir-496"    "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-552"   
## [33] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-668"    "hsa-mir-889"   
## [1] "bicluster4"
##  [1] "G6PD.RPPA"      "NF2.RPPA"       "G6PD.R2Gn"      "TFRC.R2Gn"     
##  [5] "PXN.R2Gn"       "hsa-mir-105-1"  "hsa-mir-105-2"  "hsa-mir-1185-1"
##  [9] "hsa-mir-1185-2" "hsa-mir-1249"   "hsa-mir-1269"   "hsa-mir-134"   
## [13] "hsa-mir-136"    "hsa-mir-216b"   "hsa-mir-217"    "hsa-mir-329-1" 
## [17] "hsa-mir-329-2"  "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-433"   
## [21] "hsa-mir-483"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"   
## [25] "hsa-mir-507"    "hsa-mir-543"    "hsa-mir-552"    "hsa-mir-577"   
## [29] "hsa-mir-598"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
## [33] "hsa-mir-668"    "hsa-mir-767"    "hsa-mir-770"    "hsa-mir-876"
f15_5 = top_x_percent(fabia_15)
## [1] "bicluster10"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "TSC1.RPPA"      "TFRC.RPPA"     
##  [5] "IGFBP2.R2Gn"    "CTNNB1.R2Gn"    "PIK3R1.R2Gn"    "GAPDH.R2Gn"    
##  [9] "hsa-mir-1193"   "hsa-mir-1258"   "hsa-mir-2114"   "hsa-mir-329-2" 
## [13] "hsa-mir-376a-1" "hsa-mir-380"    "hsa-mir-3922"   "hsa-mir-466"   
## [17] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [21] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [29] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-541"   
## [33] "hsa-mir-605"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-770"   
## [1] "bicluster9"
##  [1] "G6PD.RPPA"      "TGM2.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2"
##  [5] "hsa-mir-1197"   "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-154"   
##  [9] "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [13] "hsa-mir-329-2"  "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [17] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-382"   
## [21] "hsa-mir-409"    "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-485"   
## [25] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-517a"  
## [29] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"   
## [33] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"   
## [1] "bicluster13"
##  [1] "TGM2.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
##  [5] "hsa-mir-154"    "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
##  [9] "hsa-mir-329-2"  "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [13] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-380"   
## [17] "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-411"    "hsa-mir-433"   
## [21] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-494"   
## [25] "hsa-mir-496"    "hsa-mir-510"    "hsa-mir-518b"   "hsa-mir-541"   
## [29] "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [33] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster2"
##  [1] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-127"   
##  [5] "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-299"   
##  [9] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [13] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376c"  
## [17] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-382"   
## [21] "hsa-mir-409"    "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-485"   
## [25] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-541"   
## [29] "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [33] "hsa-mir-668"    "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster11"
##  [1] "GATA3.RPPA"     "ERBB3.R2Gn"     "FN1.R2Gn"       "CTNNB1.R2Gn"   
##  [5] "CCND1.R2Gn"     "hsa-mir-1185-1" "hsa-mir-124-3"  "hsa-mir-135b"  
##  [9] "hsa-mir-206"    "hsa-mir-3166"   "hsa-mir-3655"   "hsa-mir-3926-2"
## [13] "hsa-mir-411"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"   
## [17] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [21] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [29] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-516a-1"
## [33] "hsa-mir-516a-2" "hsa-mir-543"    "hsa-mir-655"    "hsa-mir-656"   
## [1] "bicluster1"
##  [1] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-127"   
##  [5] "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-299"   
##  [9] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [13] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376c"  
## [17] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-382"   
## [21] "hsa-mir-409"    "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-485"   
## [25] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-541"   
## [29] "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [33] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster12"
##  [1] "IGFBP2.RPPA"    "IGFBP2.R2Gn"    "FN1.R2Gn"       "CTNNB1.R2Gn"   
##  [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1269"   "hsa-mir-135b"  
##  [9] "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-296"    "hsa-mir-3144"  
## [13] "hsa-mir-3166"   "hsa-mir-3923"   "hsa-mir-411"    "hsa-mir-429"   
## [17] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-506"   
## [21] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [25] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [29] "hsa-mir-513b"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [33] "hsa-mir-514b"   "hsa-mir-543"    "hsa-mir-655"    "hsa-mir-656"   
## [1] "bicluster7"
##  [1] "GATA3.RPPA"     "GATA3.R2Gn"     "CTNNB1.R2Gn"    "CCND1.R2Gn"    
##  [5] "hsa-mir-1185-1" "hsa-mir-124-3"  "hsa-mir-1269"   "hsa-mir-206"   
##  [9] "hsa-mir-2114"   "hsa-mir-296"    "hsa-mir-3166"   "hsa-mir-3199-1"
## [13] "hsa-mir-3655"   "hsa-mir-3923"   "hsa-mir-411"    "hsa-mir-485"   
## [17] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [21] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [29] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-543"   
## [33] "hsa-mir-548q"   "hsa-mir-582"    "hsa-mir-656"    "hsa-mir-668"   
## [1] "bicluster15"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "FASN.RPPA"      "TTF1.RPPA"     
##  [5] "VHL.RPPA"       "AKT2.R2Gn"      "PXN.R2Gn"       "SQSTM1.R2Gn"   
##  [9] "hsa-mir-1258"   "hsa-mir-196a-2" "hsa-mir-196b"   "hsa-mir-2114"  
## [13] "hsa-mir-329-2"  "hsa-mir-3926-2" "hsa-mir-466"    "hsa-mir-506"   
## [17] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [21] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [25] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [29] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-552"    "hsa-mir-605"   
## [33] "hsa-mir-615"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-876"   
## [1] "bicluster8"
##  [1] "G6PD.RPPA"      "ERBB3.R2Gn"     "FN1.R2Gn"       "AKT2.R2Gn"     
##  [5] "BIRC2.R2Gn"     "GAPDH.R2Gn"     "HSPA1A.R2Gn"    "ERRFI1.R2Gn"   
##  [9] "PARP1.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
## [13] "hsa-mir-194-1"  "hsa-mir-194-2"  "hsa-mir-3130-1" "hsa-mir-3170"  
## [17] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [21] "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-3922"   "hsa-mir-411"   
## [25] "hsa-mir-433"    "hsa-mir-466"    "hsa-mir-487a"   "hsa-mir-496"   
## [29] "hsa-mir-543"    "hsa-mir-548s"   "hsa-mir-654"    "hsa-mir-655"   
## [33] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-887"    "hsa-mir-889"   
## [1] "bicluster3"
##  [1] "ERBB3.R2Gn"     "CDH2.R2Gn"      "BECN1.R2Gn"     "GATA3.R2Gn"    
##  [5] "ADAR.R2Gn"      "STMN1.R2Gn"     "TGM2.R2Gn"      "PIK3R1.R2Gn"   
##  [9] "ERRFI1.R2Gn"    "PARP1.R2Gn"     "hsa-mir-133b"   "hsa-mir-187"   
## [13] "hsa-mir-192"    "hsa-mir-194-1"  "hsa-mir-194-2"  "hsa-mir-196b"  
## [17] "hsa-mir-205"    "hsa-mir-3130-1" "hsa-mir-3170"   "hsa-mir-3191"  
## [21] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-383"    "hsa-mir-507"   
## [25] "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-514b"  
## [29] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"  
## [33] "hsa-mir-518b"   "hsa-mir-577"    "hsa-mir-9-3"    "hsa-mir-939"   
## [1] "bicluster14"
##  [1] "G6PD.RPPA"      "CTNNB1.R2Gn"    "TGM2.R2Gn"      "hsa-mir-1185-1"
##  [5] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-1269"   "hsa-mir-135a-1"
##  [9] "hsa-mir-138-1"  "hsa-mir-154"    "hsa-mir-206"    "hsa-mir-3199-1"
## [13] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [17] "hsa-mir-370"    "hsa-mir-376a-2" "hsa-mir-377"    "hsa-mir-380"   
## [21] "hsa-mir-382"    "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-485"   
## [25] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-517a"  
## [29] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"   
## [33] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"   
## [1] "bicluster5"
##  [1] "EGFR.RPPA"      "FASN.RPPA"      "GAPDH.RPPA"     "CTNNB1.R2Gn"   
##  [5] "GAPDH.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-127"   
##  [9] "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-200a"   "hsa-mir-200b"  
## [13] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [17] "hsa-mir-370"    "hsa-mir-376a-2" "hsa-mir-380"    "hsa-mir-381"   
## [21] "hsa-mir-3909"   "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-433"   
## [25] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-495"   
## [29] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-548v"   "hsa-mir-654"   
## [33] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-770"   
## [1] "bicluster6"
##  [1] "RBM15.RPPA"     "ATM.RPPA"       "FASN.RPPA"      "INPP4B.RPPA"   
##  [5] "PRDX1.RPPA"     "MSH6.RPPA"      "TFRC.RPPA"      "PREX1.RPPA"    
##  [9] "CDH2.R2Gn"      "FASN.R2Gn"      "EEF2.R2Gn"      "RPS6.R2Gn"     
## [13] "PRKCA.R2Gn"     "STMN1.R2Gn"     "STAT3.R2Gn"     "CDK1.R2Gn"     
## [17] "PIK3R1.R2Gn"    "CCNB1.R2Gn"     "HSPA1A.R2Gn"    "PXN.R2Gn"      
## [21] "ERRFI1.R2Gn"    "RET.R2Gn"       "hsa-mir-105-2"  "hsa-mir-1193"  
## [25] "hsa-mir-135b"   "hsa-mir-138-1"  "hsa-mir-216a"   "hsa-mir-29b-1" 
## [29] "hsa-mir-29b-2"  "hsa-mir-3191"   "hsa-mir-3922"   "hsa-mir-3923"  
## [33] "hsa-mir-3926-2" "hsa-mir-510"    "hsa-mir-605"    "hsa-mir-767"   
## [1] "bicluster4"
##  [1] "G6PD.RPPA"      "GATA3.RPPA"     "MYH11.RPPA"     "G6PD.R2Gn"     
##  [5] "IGFBP2.R2Gn"    "EEF2.R2Gn"      "RPS6.R2Gn"      "PIK3R1.R2Gn"   
##  [9] "GAPDH.R2Gn"     "hsa-mir-105-1"  "hsa-mir-105-2"  "hsa-mir-1249"  
## [13] "hsa-mir-125b-2" "hsa-mir-1270-2" "hsa-mir-182"    "hsa-mir-183"   
## [17] "hsa-mir-216b"   "hsa-mir-217"    "hsa-mir-218-1"  "hsa-mir-326"   
## [21] "hsa-mir-329-2"  "hsa-mir-380"    "hsa-mir-3926-1" "hsa-mir-3926-2"
## [25] "hsa-mir-487a"   "hsa-mir-488"    "hsa-mir-509-2"  "hsa-mir-548q"  
## [29] "hsa-mir-570"    "hsa-mir-585"    "hsa-mir-642a"   "hsa-mir-655"   
## [33] "hsa-mir-767"    "hsa-mir-891a"   "hsa-mir-939"    "hsa-mir-96"
f20_5 = top_x_percent(fabia_20)
## [1] "bicluster10"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "ATM.RPPA"       "FASN.RPPA"     
##  [5] "TSC1.RPPA"      "GAPDH.RPPA"     "TFRC.RPPA"      "FN1.R2Gn"      
##  [9] "CTNNB1.R2Gn"    "GAPDH.R2Gn"     "PXN.R2Gn"       "hsa-mir-1258"  
## [13] "hsa-mir-2114"   "hsa-mir-329-2"  "hsa-mir-3926-2" "hsa-mir-466"   
## [17] "hsa-mir-490"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [21] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [25] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [29] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [33] "hsa-mir-605"    "hsa-mir-665"    "hsa-mir-767"    "hsa-mir-876"   
## [1] "bicluster9"
##  [1] "G6PD.RPPA"      "TTF1.RPPA"      "TGM2.R2Gn"      "SQSTM1.R2Gn"   
##  [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-1269"  
##  [9] "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-299"   
## [13] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [17] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376c"  
## [21] "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-409"    "hsa-mir-411"   
## [25] "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"   
## [29] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"   
## [33] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"   
## [1] "bicluster19"
##  [1] "TGM2.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
##  [5] "hsa-mir-154"    "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
##  [9] "hsa-mir-329-2"  "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [13] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-382"   
## [17] "hsa-mir-409"    "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-485"   
## [21] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-516a-1"
## [25] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [29] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"   
## [33] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster1"
##  [1] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-127"   
##  [5] "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-299"   
##  [9] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [13] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [17] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-382"   
## [21] "hsa-mir-409"    "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-485"   
## [25] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-541"   
## [29] "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [33] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster2"
##  [1] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-127"   
##  [5] "hsa-mir-134"    "hsa-mir-154"    "hsa-mir-299"    "hsa-mir-323"   
##  [9] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-369"   
## [13] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"  
## [17] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-382"   
## [21] "hsa-mir-409"    "hsa-mir-411"    "hsa-mir-485"    "hsa-mir-487a"  
## [25] "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-541"    "hsa-mir-543"   
## [29] "hsa-mir-580"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [33] "hsa-mir-668"    "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster16"
##  [1] "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "ERRFI1.R2Gn"    "hsa-mir-1185-1"
##  [5] "hsa-mir-1193"   "hsa-mir-1197"   "hsa-mir-323"    "hsa-mir-323b"  
##  [9] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-376a-1" "hsa-mir-380"   
## [13] "hsa-mir-3922"   "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [17] "hsa-mir-466"    "hsa-mir-487a"   "hsa-mir-488"    "hsa-mir-506"   
## [21] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [25] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [29] "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [33] "hsa-mir-541"    "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-770"   
## [1] "bicluster17"
##  [1] "RBM15.RPPA"     "PTEN.RPPA"      "FASN.RPPA"      "TSC1.RPPA"     
##  [5] "PDCD4.RPPA"     "VHL.RPPA"       "GATA3.R2Gn"     "PEA15.R2Gn"    
##  [9] "CTNNB1.R2Gn"    "SHC1.R2Gn"      "CCND1.R2Gn"     "PXN.R2Gn"      
## [13] "hsa-mir-1258"   "hsa-mir-135b"   "hsa-mir-2114"   "hsa-mir-3166"  
## [17] "hsa-mir-320c-2" "hsa-mir-329-2"  "hsa-mir-3926-2" "hsa-mir-466"   
## [21] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [25] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [29] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [33] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-767"   
## [1] "bicluster15"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "TTF1.RPPA"      "VHL.RPPA"      
##  [5] "TGM2.R2Gn"      "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1258"  
##  [9] "hsa-mir-218-1"  "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-377"   
## [13] "hsa-mir-380"    "hsa-mir-3940"   "hsa-mir-466"    "hsa-mir-487a"  
## [17] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [21] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [29] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-615"   
## [33] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-770"    "hsa-mir-876"   
## [1] "bicluster13"
##  [1] "FASN.RPPA"      "FN1.R2Gn"       "TGM2.R2Gn"      "COL6A1.R2Gn"   
##  [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"   "hsa-mir-1197"  
##  [9] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [13] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"  
## [17] "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-3922"   "hsa-mir-412"   
## [21] "hsa-mir-466"    "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-496"   
## [25] "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513c"  
## [29] "hsa-mir-514-2"  "hsa-mir-541"    "hsa-mir-655"    "hsa-mir-656"   
## [33] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster7"
##  [1] "FN1.R2Gn"       "CDH2.R2Gn"      "CTNNB1.R2Gn"    "CCND1.R2Gn"    
##  [5] "hsa-mir-1185-1" "hsa-mir-124-1"  "hsa-mir-1269"   "hsa-mir-135b"  
##  [9] "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-3166"   "hsa-mir-3199-1"
## [13] "hsa-mir-3655"   "hsa-mir-3923"   "hsa-mir-411"    "hsa-mir-485"   
## [17] "hsa-mir-487a"   "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [21] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [25] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [29] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [33] "hsa-mir-543"    "hsa-mir-582"    "hsa-mir-655"    "hsa-mir-668"   
## [1] "bicluster20"
##  [1] "RBM15.RPPA"     "GAPDH.RPPA"     "ERBB3.R2Gn"     "FN1.R2Gn"      
##  [5] "GATA3.R2Gn"     "EIF4G1.R2Gn"    "STMN1.R2Gn"     "CDK1.R2Gn"     
##  [9] "GAPDH.R2Gn"     "TYMS.R2Gn"      "FOXM1.R2Gn"     "ERRFI1.R2Gn"   
## [13] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-135b"   "hsa-mir-187"   
## [17] "hsa-mir-3170"   "hsa-mir-372"    "hsa-mir-3923"   "hsa-mir-3926-1"
## [21] "hsa-mir-3926-2" "hsa-mir-411"    "hsa-mir-506"    "hsa-mir-507"   
## [25] "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3" 
## [29] "hsa-mir-510"    "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [33] "hsa-mir-514b"   "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-887"   
## [1] "bicluster12"
##  [1] "RBM15.RPPA"     "MSH6.RPPA"      "TFRC.RPPA"      "IGFBP2.R2Gn"   
##  [5] "FN1.R2Gn"       "GATA3.R2Gn"     "EEF2.R2Gn"      "CTNNB1.R2Gn"   
##  [9] "CCND1.R2Gn"     "hsa-mir-1185-2" "hsa-mir-1258"   "hsa-mir-135b"  
## [13] "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-3166"   "hsa-mir-3199-1"
## [17] "hsa-mir-320c-2" "hsa-mir-3655"   "hsa-mir-3923"   "hsa-mir-429"   
## [21] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [25] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [29] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [33] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-656"   
## [1] "bicluster11"
##  [1] "GATA3.RPPA"     "EGFR.RPPA"      "CTNNB1.R2Gn"    "CCND1.R2Gn"    
##  [5] "RPTOR.R2Gn"     "hsa-mir-1185-1" "hsa-mir-124-3"  "hsa-mir-1270-1"
##  [9] "hsa-mir-1270-2" "hsa-mir-135b"   "hsa-mir-206"    "hsa-mir-3166"  
## [13] "hsa-mir-3199-1" "hsa-mir-411"    "hsa-mir-485"    "hsa-mir-487a"  
## [17] "hsa-mir-494"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [21] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [25] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-514-1"  "hsa-mir-514-2" 
## [29] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-516a-1" "hsa-mir-525"   
## [33] "hsa-mir-543"    "hsa-mir-580"    "hsa-mir-655"    "hsa-mir-656"   
## [1] "bicluster14"
##  [1] "G6PD.RPPA"      "ATM.RPPA"       "PDCD4.RPPA"     "GAPDH.RPPA"    
##  [5] "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "FN1.R2Gn"       "CTNNB1.R2Gn"   
##  [9] "GAPDH.R2Gn"     "COL6A1.R2Gn"    "hsa-mir-105-1"  "hsa-mir-105-2" 
## [13] "hsa-mir-1185-1" "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-1270-2"
## [17] "hsa-mir-199a-1" "hsa-mir-199a-2" "hsa-mir-199b"   "hsa-mir-200b"  
## [21] "hsa-mir-214"    "hsa-mir-216b"   "hsa-mir-3199-1" "hsa-mir-329-1" 
## [25] "hsa-mir-3926-1" "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-517a"  
## [29] "hsa-mir-548b"   "hsa-mir-548q"   "hsa-mir-552"    "hsa-mir-577"   
## [33] "hsa-mir-655"    "hsa-mir-665"    "hsa-mir-767"    "hsa-mir-876"   
## [1] "bicluster18"
##  [1] "GATA3.RPPA"     "GAPDH.RPPA"     "ERBB3.R2Gn"     "AKT1S1.R2Gn"   
##  [5] "GATA3.R2Gn"     "EEF2.R2Gn"      "TGM2.R2Gn"      "CCND1.R2Gn"    
##  [9] "GAPDH.R2Gn"     "MYH9.R2Gn"      "TFRC.R2Gn"      "HSPA1A.R2Gn"   
## [13] "ERRFI1.R2Gn"    "PARP1.R2Gn"     "hsa-mir-1249"   "hsa-mir-1258"  
## [17] "hsa-mir-296"    "hsa-mir-3130-1" "hsa-mir-3170"   "hsa-mir-383"   
## [21] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [25] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [29] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [33] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-548q"  
## [1] "bicluster5"
##  [1] "ATM.RPPA"       "EGFR.RPPA"      "GAPDH.RPPA"     "ERBB3.R2Gn"    
##  [5] "PEA15.R2Gn"     "ADAR.R2Gn"      "CTNNB1.R2Gn"    "SHC1.R2Gn"     
##  [9] "TGM2.R2Gn"      "GAPDH.R2Gn"     "ERRFI1.R2Gn"    "hsa-mir-1185-1"
## [13] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-200a"   "hsa-mir-299"   
## [17] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [21] "hsa-mir-370"    "hsa-mir-376a-2" "hsa-mir-380"    "hsa-mir-381"   
## [25] "hsa-mir-411"    "hsa-mir-452"    "hsa-mir-485"    "hsa-mir-487a"  
## [29] "hsa-mir-494"    "hsa-mir-518b"   "hsa-mir-541"    "hsa-mir-543"   
## [33] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-889"   
## [1] "bicluster6"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "ATM.RPPA"       "FASN.RPPA"     
##  [5] "VHL.RPPA"       "PRDX1.RPPA"     "XBP1.RPPA"      "MSH6.RPPA"     
##  [9] "TFRC.RPPA"      "PREX1.RPPA"     "FN1.R2Gn"       "CDH2.R2Gn"     
## [13] "EEF2.R2Gn"      "PRKCA.R2Gn"     "CTNNA1.R2Gn"    "YWHAB.R2Gn"    
## [17] "HSPA1A.R2Gn"    "PXN.R2Gn"       "RET.R2Gn"       "SQSTM1.R2Gn"   
## [21] "hsa-mir-1258"   "hsa-mir-135b"   "hsa-mir-199a-1" "hsa-mir-199a-2"
## [25] "hsa-mir-199b"   "hsa-mir-3923"   "hsa-mir-3926-2" "hsa-mir-3934"  
## [29] "hsa-mir-466"    "hsa-mir-483"    "hsa-mir-507"    "hsa-mir-510"   
## [33] "hsa-mir-513a-2" "hsa-mir-605"    "hsa-mir-873"    "hsa-mir-876"   
## [1] "bicluster3"
##  [1] "IGFBP2.RPPA"    "PEA15.RPPA"     "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
##  [5] "CDH2.R2Gn"      "ADAR.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2"
##  [9] "hsa-mir-1197"   "hsa-mir-206"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [13] "hsa-mir-329-2"  "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-380"   
## [17] "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"  
## [21] "hsa-mir-494"    "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1"
## [25] "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-518f"   "hsa-mir-519a-2"
## [29] "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-541"   
## [33] "hsa-mir-543"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"   
## [1] "bicluster8"
##  [1] "ASNS.RPPA"      "PTEN.RPPA"      "PEA15.RPPA"     "ERBB3.R2Gn"    
##  [5] "FN1.R2Gn"       "AKT2.R2Gn"      "CDH2.R2Gn"      "SERPINE1.R2Gn" 
##  [9] "PDCD4.R2Gn"     "YWHAB.R2Gn"     "ERRFI1.R2Gn"    "CHGA.R2Gn"     
## [13] "hsa-mir-100"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1293"  
## [17] "hsa-mir-135b"   "hsa-mir-141"    "hsa-mir-146b"   "hsa-mir-184"   
## [21] "hsa-mir-199a-1" "hsa-mir-199a-2" "hsa-mir-199b"   "hsa-mir-214"   
## [25] "hsa-mir-30c-1"  "hsa-mir-3170"   "hsa-mir-3173"   "hsa-mir-323b"  
## [29] "hsa-mir-329-2"  "hsa-mir-3678"   "hsa-mir-3926-1" "hsa-mir-496"   
## [33] "hsa-mir-548s"   "hsa-mir-552"    "hsa-mir-656"    "hsa-mir-668"   
## [1] "bicluster4"
##  [1] "G6PD.RPPA"      "G6PD.R2Gn"      "FN1.R2Gn"       "ADAR.R2Gn"     
##  [5] "RPS6.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1248"  
##  [9] "hsa-mir-1249"   "hsa-mir-1270-2" "hsa-mir-135b"   "hsa-mir-206"   
## [13] "hsa-mir-2114"   "hsa-mir-216b"   "hsa-mir-217"    "hsa-mir-218-1" 
## [17] "hsa-mir-323b"   "hsa-mir-326"    "hsa-mir-329-1"  "hsa-mir-329-2" 
## [21] "hsa-mir-346"    "hsa-mir-34b"    "hsa-mir-377"    "hsa-mir-380"   
## [25] "hsa-mir-3923"   "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-485"   
## [29] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-548j"   "hsa-mir-627"   
## [33] "hsa-mir-642a"   "hsa-mir-655"    "hsa-mir-663"    "hsa-mir-891a"
f35_5 = top_x_percent(fabia_35)
## [1] "bicluster21"
##  [1] "RBM15.RPPA"     "FASN.RPPA"      "VHL.RPPA"       "TFRC.RPPA"     
##  [5] "hsa-mir-1193"   "hsa-mir-124-3"  "hsa-mir-1258"   "hsa-mir-3191"  
##  [9] "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-329-2"  "hsa-mir-3682"  
## [13] "hsa-mir-3909"   "hsa-mir-3926-2" "hsa-mir-3934"   "hsa-mir-466"   
## [17] "hsa-mir-499"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [21] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [25] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [29] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [33] "hsa-mir-544"    "hsa-mir-548v"   "hsa-mir-581"    "hsa-mir-605"   
## [1] "bicluster19"
##  [1] "INPP4B.RPPA"    "FN1.R2Gn"       "CTNNB1.R2Gn"    "TGM2.R2Gn"     
##  [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-206"   
##  [9] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-370"   
## [13] "hsa-mir-376a-2" "hsa-mir-380"    "hsa-mir-382"    "hsa-mir-3926-1"
## [17] "hsa-mir-411"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"   
## [21] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"  
## [25] "hsa-mir-518b"   "hsa-mir-518c"   "hsa-mir-518f"   "hsa-mir-519a-2"
## [29] "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-541"   
## [33] "hsa-mir-543"    "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-770"   
## [1] "bicluster16"
##  [1] "GATA3.RPPA"     "PDCD4.RPPA"     "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
##  [5] "PRKCA.R2Gn"     "HSPA1A.R2Gn"    "ERRFI1.R2Gn"    "RBM3.R2Gn"     
##  [9] "hsa-mir-1185-1" "hsa-mir-1197"   "hsa-mir-1228"   "hsa-mir-1245"  
## [13] "hsa-mir-1270-1" "hsa-mir-135a-1" "hsa-mir-200b"   "hsa-mir-214"   
## [17] "hsa-mir-3170"   "hsa-mir-335"    "hsa-mir-3678"   "hsa-mir-3909"  
## [21] "hsa-mir-3922"   "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [25] "hsa-mir-466"    "hsa-mir-488"    "hsa-mir-493"    "hsa-mir-506"   
## [29] "hsa-mir-507"    "hsa-mir-510"    "hsa-mir-541"    "hsa-mir-550a-2"
## [33] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-876"    "hsa-mir-937"   
## [1] "bicluster24"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "TTF1.RPPA"      "CDK1.RPPA"     
##  [5] "VHL.RPPA"       "PRDX1.RPPA"     "XBP1.RPPA"      "GAPDH.RPPA"    
##  [9] "MSH6.RPPA"      "TFRC.RPPA"      "PREX1.RPPA"     "FASN.R2Gn"     
## [13] "CTNNB1.R2Gn"    "PRKCA.R2Gn"     "TGM2.R2Gn"      "PIK3R1.R2Gn"   
## [17] "PXN.R2Gn"       "SQSTM1.R2Gn"    "hsa-mir-1258"   "hsa-mir-200a"  
## [21] "hsa-mir-329-2"  "hsa-mir-380"    "hsa-mir-3909"   "hsa-mir-3934"  
## [25] "hsa-mir-3940"   "hsa-mir-466"    "hsa-mir-487a"   "hsa-mir-507"   
## [29] "hsa-mir-510"    "hsa-mir-513a-2" "hsa-mir-605"    "hsa-mir-653"   
## [33] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-873"    "hsa-mir-876"   
## [1] "bicluster9"
##  [1] "G6PD.RPPA"      "GATA3.RPPA"     "FASN.RPPA"      "TTF1.RPPA"     
##  [5] "VHL.RPPA"       "G6PD.R2Gn"      "FN1.R2Gn"       "TGM2.R2Gn"     
##  [9] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
## [13] "hsa-mir-1247"   "hsa-mir-1269"   "hsa-mir-320c-2" "hsa-mir-323"   
## [17] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-370"    "hsa-mir-376a-2"
## [21] "hsa-mir-377"    "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-485"   
## [25] "hsa-mir-487a"   "hsa-mir-489"    "hsa-mir-494"    "hsa-mir-516a-1"
## [29] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-525"    "hsa-mir-543"   
## [33] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-770"   
## [1] "bicluster2"
##  [1] "FASN.RPPA"      "TTF1.RPPA"      "MSH6.RPPA"      "MYH11.RPPA"    
##  [5] "TFRC.RPPA"      "PIK3R1.R2Gn"    "BCL2L1.R2Gn"    "TFRC.R2Gn"     
##  [9] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1197"   "hsa-mir-124-1" 
## [13] "hsa-mir-124-2"  "hsa-mir-124-3"  "hsa-mir-3193"   "hsa-mir-329-1" 
## [17] "hsa-mir-329-2"  "hsa-mir-3687"   "hsa-mir-376a-1" "hsa-mir-376a-2"
## [21] "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-3912"   "hsa-mir-411"   
## [25] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-541"   
## [29] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-670"   
## [33] "hsa-mir-770"    "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-937"   
## [1] "bicluster13"
##  [1] "ASNS.RPPA"      "FASN.RPPA"      "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [5] "AKT2.R2Gn"      "EEF2.R2Gn"      "RPS6.R2Gn"      "JUN.R2Gn"      
##  [9] "COL6A1.R2Gn"    "ANXA1.R2Gn"     "HSPA1A.R2Gn"    "SYP.R2Gn"      
## [13] "hsa-mir-1193"   "hsa-mir-124-2"  "hsa-mir-124-3"  "hsa-mir-146b"  
## [17] "hsa-mir-202"    "hsa-mir-31"     "hsa-mir-3682"   "hsa-mir-412"   
## [21] "hsa-mir-466"    "hsa-mir-490"    "hsa-mir-510"    "hsa-mir-511-1" 
## [25] "hsa-mir-516a-2" "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-518f"  
## [29] "hsa-mir-519a-2" "hsa-mir-544"    "hsa-mir-552"    "hsa-mir-582"   
## [33] "hsa-mir-605"    "hsa-mir-653"    "hsa-mir-656"    "hsa-mir-891a"  
## [1] "bicluster29"
##  [1] "PEA15.RPPA"     "TFRC.RPPA"      "PREX1.RPPA"     "ERBB3.R2Gn"    
##  [5] "CDH2.R2Gn"      "PEA15.R2Gn"     "ITGA2.R2Gn"     "ADAR.R2Gn"     
##  [9] "CTNNB1.R2Gn"    "PRKCA.R2Gn"     "PIK3R2.R2Gn"    "HSPA1A.R2Gn"   
## [13] "ERRFI1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
## [17] "hsa-mir-1258"   "hsa-mir-135a-1" "hsa-mir-139"    "hsa-mir-196b"  
## [21] "hsa-mir-206"    "hsa-mir-3166"   "hsa-mir-3170"   "hsa-mir-3199-1"
## [25] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-335"    "hsa-mir-3678"  
## [29] "hsa-mir-433"    "hsa-mir-487a"   "hsa-mir-488"    "hsa-mir-517a"  
## [33] "hsa-mir-541"    "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-876"   
## [1] "bicluster10"
##  [1] "ATM.RPPA"       "FASN.RPPA"      "TSC1.RPPA"      "GAPDH.RPPA"    
##  [5] "TFRC.RPPA"      "ERBB3.R2Gn"     "CDH2.R2Gn"      "XRCC5.R2Gn"    
##  [9] "CTNNB1.R2Gn"    "PIK3R1.R2Gn"    "GAPDH.R2Gn"     "TFRC.R2Gn"     
## [13] "PARP1.R2Gn"     "hsa-mir-1269"   "hsa-mir-2114"   "hsa-mir-320c-2"
## [17] "hsa-mir-3922"   "hsa-mir-3923"   "hsa-mir-3926-2" "hsa-mir-466"   
## [21] "hsa-mir-490"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [25] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [29] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [33] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-585"   
## [1] "bicluster7"
##  [1] "GATA3.RPPA"     "ATM.RPPA"       "EGFR.RPPA"      "TSC1.RPPA"     
##  [5] "GAPDH.RPPA"     "TFRC.RPPA"      "ERBB3.R2Gn"     "FN1.R2Gn"      
##  [9] "CCND1.R2Gn"     "GAPDH.R2Gn"     "SYP.R2Gn"       "PARP1.R2Gn"    
## [13] "hsa-mir-1185-1" "hsa-mir-1226"   "hsa-mir-1269"   "hsa-mir-1293"  
## [17] "hsa-mir-184"    "hsa-mir-2114"   "hsa-mir-30c-1"  "hsa-mir-3199-1"
## [21] "hsa-mir-320c-2" "hsa-mir-3923"   "hsa-mir-429"    "hsa-mir-506"   
## [25] "hsa-mir-507"    "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-510"   
## [29] "hsa-mir-513a-2" "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [33] "hsa-mir-514b"   "hsa-mir-548v"   "hsa-mir-582"    "hsa-mir-937"   
## [1] "bicluster34"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "FASN.RPPA"      "PDCD4.RPPA"    
##  [5] "MSH6.RPPA"      "MSH2.RPPA"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
##  [9] "RPS6KA1.R2Gn"   "ADAR.R2Gn"      "EEF2.R2Gn"      "CTNNB1.R2Gn"   
## [13] "GAPDH.R2Gn"     "hsa-mir-124-1"  "hsa-mir-124-3"  "hsa-mir-1248"  
## [17] "hsa-mir-1251"   "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-1270-2"
## [21] "hsa-mir-135b"   "hsa-mir-187"    "hsa-mir-200b"   "hsa-mir-218-2" 
## [25] "hsa-mir-296"    "hsa-mir-3130-1" "hsa-mir-3166"   "hsa-mir-3687"  
## [29] "hsa-mir-3690"   "hsa-mir-411"    "hsa-mir-510"    "hsa-mir-511-2" 
## [33] "hsa-mir-552"    "hsa-mir-605"    "hsa-mir-887"    "hsa-mir-940"   
## [1] "bicluster31"
##  [1] "G6PD.RPPA"      "ATM.RPPA"       "EGFR.RPPA"      "GAPDH.RPPA"    
##  [5] "MYH11.RPPA"     "ERBB3.R2Gn"     "CDKN1A.R2Gn"    "YWHAE.R2Gn"    
##  [9] "RPS6.R2Gn"      "PRDX1.R2Gn"     "GAPDH.R2Gn"     "HSPA1A.R2Gn"   
## [13] "RET.R2Gn"       "hsa-mir-105-2"  "hsa-mir-1185-1" "hsa-mir-1185-2"
## [17] "hsa-mir-1193"   "hsa-mir-1197"   "hsa-mir-1249"   "hsa-mir-1293"  
## [21] "hsa-mir-200b"   "hsa-mir-329-2"  "hsa-mir-33b"    "hsa-mir-376a-1"
## [25] "hsa-mir-3922"   "hsa-mir-433"    "hsa-mir-490"    "hsa-mir-496"   
## [29] "hsa-mir-516a-1" "hsa-mir-544"    "hsa-mir-585"    "hsa-mir-605"   
## [33] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-891a"  
## [1] "bicluster27"
##  [1] "GATA3.RPPA"     "GAPDH.RPPA"     "ERBB3.R2Gn"     "FN1.R2Gn"      
##  [5] "CDH2.R2Gn"      "SERPINE1.R2Gn"  "CTNNB1.R2Gn"    "TGM2.R2Gn"     
##  [9] "PRDX1.R2Gn"     "NDRG1.R2Gn"     "HSPA1A.R2Gn"    "SYP.R2Gn"      
## [13] "hsa-mir-1255a"  "hsa-mir-1270-1" "hsa-mir-133b"   "hsa-mir-184"   
## [17] "hsa-mir-205"    "hsa-mir-3928"   "hsa-mir-3934"   "hsa-mir-483"   
## [21] "hsa-mir-499"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [25] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [29] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514b"  
## [33] "hsa-mir-516a-1" "hsa-mir-517a"   "hsa-mir-525"    "hsa-mir-767"   
## [1] "bicluster15"
##  [1] "G6PD.RPPA"      "PTEN.RPPA"      "INPP4B.RPPA"    "PDCD4.RPPA"    
##  [5] "TTF1.RPPA"      "VHL.RPPA"       "PRDX1.RPPA"     "XBP1.RPPA"     
##  [9] "TGM2.R2Gn"      "ANXA1.R2Gn"     "SQSTM1.R2Gn"    "hsa-mir-122"   
## [13] "hsa-mir-1258"   "hsa-mir-153-1"  "hsa-mir-2114"   "hsa-mir-218-1" 
## [17] "hsa-mir-3173"   "hsa-mir-320c-1" "hsa-mir-320c-2" "hsa-mir-3610"  
## [21] "hsa-mir-3940"   "hsa-mir-466"    "hsa-mir-489"    "hsa-mir-507"   
## [25] "hsa-mir-513a-1" "hsa-mir-551b"   "hsa-mir-552"    "hsa-mir-570"   
## [29] "hsa-mir-653"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-7-2"   
## [33] "hsa-mir-765"    "hsa-mir-770"    "hsa-mir-876"    "hsa-mir-95"    
## [1] "bicluster25"
##  [1] "IGFBP2.RPPA"    "ATM.RPPA"       "AR.RPPA"        "GAPDH.RPPA"    
##  [5] "IGFBP2.R2Gn"    "CTNNB1.R2Gn"    "PRRT2.R2Gn"     "GAPDH.R2Gn"    
##  [9] "ANXA1.R2Gn"     "ERRFI1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1269"  
## [13] "hsa-mir-183"    "hsa-mir-190b"   "hsa-mir-196b"   "hsa-mir-205"   
## [17] "hsa-mir-301b"   "hsa-mir-3173"   "hsa-mir-3187"   "hsa-mir-320c-1"
## [21] "hsa-mir-329-2"  "hsa-mir-3610"   "hsa-mir-3620"   "hsa-mir-3940"  
## [25] "hsa-mir-466"    "hsa-mir-483"    "hsa-mir-517a"   "hsa-mir-548q"  
## [29] "hsa-mir-580"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
## [33] "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-891a"   "hsa-mir-96"    
## [1] "bicluster22"
##  [1] "GATA3.RPPA"     "ATM.RPPA"       "AR.RPPA"        "ERBB3.R2Gn"    
##  [5] "PEA15.R2Gn"     "ADAR.R2Gn"      "CTNNB1.R2Gn"    "SHC1.R2Gn"     
##  [9] "TGM2.R2Gn"      "GAPDH.R2Gn"     "hsa-mir-105-1"  "hsa-mir-133b"  
## [13] "hsa-mir-135b"   "hsa-mir-206"    "hsa-mir-3166"   "hsa-mir-320c-2"
## [17] "hsa-mir-3678"   "hsa-mir-3922"   "hsa-mir-3926-2" "hsa-mir-429"   
## [21] "hsa-mir-509-2"  "hsa-mir-510"    "hsa-mir-516a-1" "hsa-mir-516a-2"
## [25] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-518f"  
## [29] "hsa-mir-519a-2" "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-548s"  
## [33] "hsa-mir-579"    "hsa-mir-605"    "hsa-mir-7-2"    "hsa-mir-767"   
## [1] "bicluster1"
##  [1] "BRCA2.RPPA"     "FASN.RPPA"      "ACVRL1.RPPA"    "GAPDH.RPPA"    
##  [5] "ERBB3.R2Gn"     "FN1.R2Gn"       "FASN.R2Gn"      "FOXO3.R2Gn"    
##  [9] "GAPDH.R2Gn"     "hsa-mir-105-1"  "hsa-mir-106a"   "hsa-mir-124-3" 
## [13] "hsa-mir-134"    "hsa-mir-135a-2" "hsa-mir-144"    "hsa-mir-190"   
## [17] "hsa-mir-26a-1"  "hsa-mir-320c-1" "hsa-mir-323b"   "hsa-mir-329-1" 
## [21] "hsa-mir-329-2"  "hsa-mir-34b"    "hsa-mir-376a-2" "hsa-mir-380"   
## [25] "hsa-mir-3912"   "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-451"   
## [29] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-511-1"  "hsa-mir-517a"  
## [33] "hsa-mir-541"    "hsa-mir-580"    "hsa-mir-655"    "hsa-mir-770"   
## [1] "bicluster28"
##  [1] "TFRC.RPPA"      "ERBB3.R2Gn"     "GATA3.R2Gn"     "CCND1.R2Gn"    
##  [5] "XBP1.R2Gn"      "GAPDH.R2Gn"     "TFRC.R2Gn"      "HSPA1A.R2Gn"   
##  [9] "ERRFI1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1193"   "hsa-mir-1249"  
## [13] "hsa-mir-1269"   "hsa-mir-135a-1" "hsa-mir-138-1"  "hsa-mir-138-2" 
## [17] "hsa-mir-187"    "hsa-mir-196a-2" "hsa-mir-205"    "hsa-mir-216b"  
## [21] "hsa-mir-3130-1" "hsa-mir-346"    "hsa-mir-34b"    "hsa-mir-376a-2"
## [25] "hsa-mir-380"    "hsa-mir-411"    "hsa-mir-432"    "hsa-mir-433"   
## [29] "hsa-mir-485"    "hsa-mir-488"    "hsa-mir-490"    "hsa-mir-541"   
## [33] "hsa-mir-543"    "hsa-mir-615"    "hsa-mir-636"    "hsa-mir-9-3"   
## [1] "bicluster12"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "TTF1.RPPA"      "GAPDH.RPPA"    
##  [5] "MSH6.RPPA"      "TFRC.RPPA"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
##  [9] "FN1.R2Gn"       "STMN1.R2Gn"     "SNAI2.R2Gn"     "SQSTM1.R2Gn"   
## [13] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1262"   "hsa-mir-1269"  
## [17] "hsa-mir-129-2"  "hsa-mir-200a"   "hsa-mir-2114"   "hsa-mir-29b-1" 
## [21] "hsa-mir-29b-2"  "hsa-mir-29c"    "hsa-mir-31"     "hsa-mir-320c-2"
## [25] "hsa-mir-34b"    "hsa-mir-3923"   "hsa-mir-411"    "hsa-mir-429"   
## [29] "hsa-mir-487a"   "hsa-mir-510"    "hsa-mir-513b"   "hsa-mir-548q"  
## [33] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-891a"   "hsa-mir-937"   
## [1] "bicluster20"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
##  [5] "FN1.R2Gn"       "EIF4G1.R2Gn"    "ADAR.R2Gn"      "RPS6.R2Gn"     
##  [9] "ANLN.R2Gn"      "STMN1.R2Gn"     "CDK1.R2Gn"      "CTNNA1.R2Gn"   
## [13] "CAV1.R2Gn"      "TYMS.R2Gn"      "TUBA1B.R2Gn"    "FOXM1.R2Gn"    
## [17] "COL6A1.R2Gn"    "EZH2.R2Gn"      "CDKN2A.R2Gn"    "hsa-mir-1245"  
## [21] "hsa-mir-1247"   "hsa-mir-135b"   "hsa-mir-138-1"  "hsa-mir-138-2" 
## [25] "hsa-mir-202"    "hsa-mir-29c"    "hsa-mir-3144"   "hsa-mir-3191"  
## [29] "hsa-mir-372"    "hsa-mir-3923"   "hsa-mir-3926-1" "hsa-mir-3926-2"
## [33] "hsa-mir-499"    "hsa-mir-507"    "hsa-mir-876"    "hsa-mir-940"   
## [1] "bicluster11"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "EGFR.RPPA"      "MSH6.RPPA"     
##  [5] "G6PD.R2Gn"      "ERBB3.R2Gn"     "FN1.R2Gn"       "TGM2.R2Gn"     
##  [9] "CCND1.R2Gn"     "COL6A1.R2Gn"    "HSPA1A.R2Gn"    "hsa-mir-1185-1"
## [13] "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-206"   
## [17] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-376a-2" "hsa-mir-377"   
## [21] "hsa-mir-380"    "hsa-mir-411"    "hsa-mir-466"    "hsa-mir-485"   
## [25] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-516a-1" "hsa-mir-516a-2"
## [29] "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-525"    "hsa-mir-543"   
## [33] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-876"    "hsa-mir-889"   
## [1] "bicluster14"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "NF2.RPPA"       "ERBB3.R2Gn"    
##  [5] "FN1.R2Gn"       "FASN.R2Gn"      "CTNNB1.R2Gn"    "FOXO3.R2Gn"    
##  [9] "BCL2.R2Gn"      "CCND1.R2Gn"     "XBP1.R2Gn"      "GAPDH.R2Gn"    
## [13] "COL6A1.R2Gn"    "HSPA1A.R2Gn"    "SYP.R2Gn"       "hsa-mir-105-2" 
## [17] "hsa-mir-1269"   "hsa-mir-200a"   "hsa-mir-200b"   "hsa-mir-26a-1" 
## [21] "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-329-1"  "hsa-mir-3690"  
## [25] "hsa-mir-3926-1" "hsa-mir-433"    "hsa-mir-488"    "hsa-mir-511-2" 
## [29] "hsa-mir-516a-1" "hsa-mir-517a"   "hsa-mir-520a"   "hsa-mir-526b"  
## [33] "hsa-mir-548q"   "hsa-mir-585"    "hsa-mir-885"    "hsa-mir-9-3"   
## [1] "bicluster17"
##  [1] "PEA15.RPPA"     "TSC1.RPPA"      "TTF1.RPPA"      "VHL.RPPA"      
##  [5] "ERBB3.R2Gn"     "PEA15.R2Gn"     "ADAR.R2Gn"      "SERPINE1.R2Gn" 
##  [9] "CTNNB1.R2Gn"    "SHC1.R2Gn"      "CCND1.R2Gn"     "GAPDH.R2Gn"    
## [13] "hsa-mir-1249"   "hsa-mir-1255a"  "hsa-mir-1292"   "hsa-mir-138-2" 
## [17] "hsa-mir-218-1"  "hsa-mir-3190"   "hsa-mir-506"    "hsa-mir-507"   
## [21] "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3" 
## [25] "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"  
## [29] "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [33] "hsa-mir-514b"   "hsa-mir-659"    "hsa-mir-760"    "hsa-mir-876"   
## [1] "bicluster33"
##  [1] "IGFBP2.RPPA"    "IGFBP2.R2Gn"    "FN1.R2Gn"       "PIK3R1.R2Gn"   
##  [5] "HSPA1A.R2Gn"    "ERRFI1.R2Gn"    "hsa-mir-1185-2" "hsa-mir-1247"  
##  [9] "hsa-mir-1249"   "hsa-mir-1269"   "hsa-mir-1292"   "hsa-mir-138-2" 
## [13] "hsa-mir-196a-2" "hsa-mir-216b"   "hsa-mir-3170"   "hsa-mir-3173"  
## [17] "hsa-mir-3193"   "hsa-mir-329-2"  "hsa-mir-346"    "hsa-mir-3678"  
## [21] "hsa-mir-383"    "hsa-mir-487a"   "hsa-mir-504"    "hsa-mir-510"   
## [25] "hsa-mir-516a-2" "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-519a-2"
## [29] "hsa-mir-520a"   "hsa-mir-526b"   "hsa-mir-541"    "hsa-mir-615"   
## [33] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-760"    "hsa-mir-876"   
## [1] "bicluster5"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "ASNS.RPPA"      "RBM15.RPPA"    
##  [5] "PEA15.RPPA"     "ATM.RPPA"       "EGFR.RPPA"      "TSC1.RPPA"     
##  [9] "GAPDH.RPPA"     "NF2.RPPA"       "CDH2.R2Gn"      "CDKN1A.R2Gn"   
## [13] "PEA15.R2Gn"     "ADAR.R2Gn"      "SHC1.R2Gn"      "GAPDH.R2Gn"    
## [17] "SYP.R2Gn"       "hsa-mir-1255a"  "hsa-mir-1305"   "hsa-mir-184"   
## [21] "hsa-mir-200a"   "hsa-mir-200b"   "hsa-mir-206"    "hsa-mir-218-1" 
## [25] "hsa-mir-296"    "hsa-mir-301b"   "hsa-mir-3610"   "hsa-mir-3687"  
## [29] "hsa-mir-3909"   "hsa-mir-3917"   "hsa-mir-3926-1" "hsa-mir-3940"  
## [33] "hsa-mir-429"    "hsa-mir-548q"   "hsa-mir-552"    "hsa-mir-580"   
## [1] "bicluster18"
##  [1] "GATA3.RPPA"     "PEA15.RPPA"     "MAPK14.R2Gn"    "ERBB3.R2Gn"    
##  [5] "CDH2.R2Gn"      "GATA3.R2Gn"     "EIF4G1.R2Gn"    "ITGA2.R2Gn"    
##  [9] "ADAR.R2Gn"      "EEF2.R2Gn"      "CTNNB1.R2Gn"    "RPS6.R2Gn"     
## [13] "TGM2.R2Gn"      "GAPDH.R2Gn"     "NDRG1.R2Gn"     "BID.R2Gn"      
## [17] "TFRC.R2Gn"      "ERRFI1.R2Gn"    "PARP1.R2Gn"     "TFF1.R2Gn"     
## [21] "hsa-mir-124-3"  "hsa-mir-1269"   "hsa-mir-3130-1" "hsa-mir-3170"  
## [25] "hsa-mir-320c-2" "hsa-mir-383"    "hsa-mir-3922"   "hsa-mir-452"   
## [29] "hsa-mir-499"    "hsa-mir-507"    "hsa-mir-510"    "hsa-mir-513a-1"
## [33] "hsa-mir-513a-2" "hsa-mir-514b"   "hsa-mir-516a-1" "hsa-mir-518b"  
## [1] "bicluster26"
##  [1] "G6PD.RPPA"      "EGFR.RPPA"      "TFRC.RPPA"      "ERBB3.R2Gn"    
##  [5] "FN1.R2Gn"       "SERPINE1.R2Gn"  "JUN.R2Gn"       "PIK3R1.R2Gn"   
##  [9] "TFRC.R2Gn"      "ERRFI1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-124-1" 
## [13] "hsa-mir-190b"   "hsa-mir-2114"   "hsa-mir-216b"   "hsa-mir-217"   
## [17] "hsa-mir-224"    "hsa-mir-296"    "hsa-mir-3130-1" "hsa-mir-3170"  
## [21] "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-3662"   "hsa-mir-3923"  
## [25] "hsa-mir-452"    "hsa-mir-487a"   "hsa-mir-488"    "hsa-mir-494"   
## [29] "hsa-mir-499"    "hsa-mir-516a-1" "hsa-mir-548q"   "hsa-mir-548s"  
## [33] "hsa-mir-577"    "hsa-mir-580"    "hsa-mir-656"    "hsa-mir-873"   
## [1] "bicluster3"
##  [1] "IGFBP2.RPPA"    "PDCD4.RPPA"     "ERBB3.R2Gn"     "FN1.R2Gn"      
##  [5] "ADAR.R2Gn"      "SERPINE1.R2Gn"  "PIK3R1.R2Gn"    "MYH9.R2Gn"     
##  [9] "SYP.R2Gn"       "PARP1.R2Gn"     "hsa-mir-1248"   "hsa-mir-129-2" 
## [13] "hsa-mir-1292"   "hsa-mir-1304"   "hsa-mir-182"    "hsa-mir-183"   
## [17] "hsa-mir-187"    "hsa-mir-216b"   "hsa-mir-34b"    "hsa-mir-3678"  
## [21] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"  
## [25] "hsa-mir-518b"   "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"  
## [29] "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-570"    "hsa-mir-636"   
## [33] "hsa-mir-7-2"    "hsa-mir-760"    "hsa-mir-765"    "hsa-mir-96"    
## [1] "bicluster23"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "PTEN.RPPA"      "EGFR.RPPA"     
##  [5] "FASN.RPPA"      "IRS1.RPPA"      "ERCC1.RPPA"     "AKT1.R2Gn"     
##  [9] "ADAR.R2Gn"      "EGFR.R2Gn"      "SERPINE1.R2Gn"  "SHC1.R2Gn"     
## [13] "PIK3R1.R2Gn"    "TUBA1B.R2Gn"    "PXN.R2Gn"       "SYP.R2Gn"      
## [17] "ANXA7.R2Gn"     "hsa-mir-1251"   "hsa-mir-1269"   "hsa-mir-129-1" 
## [21] "hsa-mir-129-2"  "hsa-mir-135a-1" "hsa-mir-138-2"  "hsa-mir-184"   
## [25] "hsa-mir-187"    "hsa-mir-196a-2" "hsa-mir-2277"   "hsa-mir-30c-1" 
## [29] "hsa-mir-3651"   "hsa-mir-3687"   "hsa-mir-570"    "hsa-mir-605"   
## [33] "hsa-mir-659"    "hsa-mir-7-3"    "hsa-mir-767"    "hsa-mir-9-3"   
## [1] "bicluster4"
##  [1] "IGFBP2.RPPA"    "FASN.RPPA"      "MSH6.RPPA"      "PREX1.RPPA"    
##  [5] "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "FN1.R2Gn"       "FASN.R2Gn"     
##  [9] "CCND1.R2Gn"     "GAPDH.R2Gn"     "PIK3R2.R2Gn"    "ERRFI1.R2Gn"   
## [13] "SYP.R2Gn"       "SNAI2.R2Gn"     "SQSTM1.R2Gn"    "hsa-mir-1248"  
## [17] "hsa-mir-1249"   "hsa-mir-135b"   "hsa-mir-200b"   "hsa-mir-2114"  
## [21] "hsa-mir-218-1"  "hsa-mir-29c"    "hsa-mir-301b"   "hsa-mir-31"    
## [25] "hsa-mir-34b"    "hsa-mir-3614"   "hsa-mir-3923"   "hsa-mir-429"   
## [29] "hsa-mir-489"    "hsa-mir-511-1"  "hsa-mir-511-2"  "hsa-mir-516a-1"
## [33] "hsa-mir-516a-2" "hsa-mir-605"    "hsa-mir-627"    "hsa-mir-642a"  
## [1] "bicluster8"
##  [1] "IGFBP2.RPPA"    "PTEN.RPPA"      "GATA3.RPPA"     "PEA15.RPPA"    
##  [5] "ATM.RPPA"       "FASN.RPPA"      "MYH11.RPPA"     "TFRC.RPPA"     
##  [9] "KDR.R2Gn"       "ERBB3.R2Gn"     "FN1.R2Gn"       "AKT2.R2Gn"     
## [13] "CDH2.R2Gn"      "EEF2.R2Gn"      "SERPINE1.R2Gn"  "PDK1.R2Gn"     
## [17] "HSPA1A.R2Gn"    "ERRFI1.R2Gn"    "hsa-mir-122"    "hsa-mir-1270-1"
## [21] "hsa-mir-135b"   "hsa-mir-184"    "hsa-mir-188"    "hsa-mir-194-1" 
## [25] "hsa-mir-194-2"  "hsa-mir-210"    "hsa-mir-30c-1"  "hsa-mir-3170"  
## [29] "hsa-mir-3678"   "hsa-mir-3909"   "hsa-mir-3926-2" "hsa-mir-519a-2"
## [33] "hsa-mir-548s"   "hsa-mir-639"    "hsa-mir-765"    "hsa-mir-939"   
## [1] "bicluster6"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "RBM15.RPPA"     "GATA3.RPPA"    
##  [5] "ATM.RPPA"       "EGFR.RPPA"      "PRDX1.RPPA"     "MSH6.RPPA"     
##  [9] "G6PD.R2Gn"      "KDR.R2Gn"       "IGFBP2.R2Gn"    "FN1.R2Gn"      
## [13] "CDH2.R2Gn"      "RB1.R2Gn"       "SERPINE1.R2Gn"  "NDRG1.R2Gn"    
## [17] "HSPA1A.R2Gn"    "SYP.R2Gn"       "hsa-mir-1228"   "hsa-mir-1249"  
## [21] "hsa-mir-135b"   "hsa-mir-137"    "hsa-mir-138-1"  "hsa-mir-138-2" 
## [25] "hsa-mir-216a"   "hsa-mir-30c-1"  "hsa-mir-3144"   "hsa-mir-3199-1"
## [29] "hsa-mir-3620"   "hsa-mir-372"    "hsa-mir-3926-1" "hsa-mir-585"   
## [33] "hsa-mir-760"    "hsa-mir-765"    "hsa-mir-873"    "hsa-mir-876"   
## [1] "bicluster35"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "GATA3.RPPA"     "PDCD4.RPPA"    
##  [5] "AR.RPPA"        "GAPDH.RPPA"     "IGFBP2.R2Gn"    "EEF2.R2Gn"     
##  [9] "PRKCA.R2Gn"     "GAPDH.R2Gn"     "HSPA1A.R2Gn"    "ERRFI1.R2Gn"   
## [13] "hsa-mir-105-1"  "hsa-mir-1229"   "hsa-mir-1255a"  "hsa-mir-204"   
## [17] "hsa-mir-2114"   "hsa-mir-216a"   "hsa-mir-3191"   "hsa-mir-3620"  
## [21] "hsa-mir-3928"   "hsa-mir-450a-2" "hsa-mir-455"    "hsa-mir-488"   
## [25] "hsa-mir-507"    "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-514b"  
## [29] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-526b"   "hsa-mir-545"   
## [33] "hsa-mir-552"    "hsa-mir-760"    "hsa-mir-891a"   "hsa-mir-937"   
## [1] "bicluster32"
##  [1] "IGFBP2.RPPA"   "RBM15.RPPA"    "DIRAS3.R2Gn"   "ERBB3.R2Gn"   
##  [5] "IGFBP2.R2Gn"   "CDKN1A.R2Gn"   "GATA3.R2Gn"    "EEF2.R2Gn"    
##  [9] "SERPINE1.R2Gn" "CTNNB1.R2Gn"   "RPS6.R2Gn"     "PRDX1.R2Gn"   
## [13] "NRG1.R2Gn"     "HSPA1A.R2Gn"   "CDKN2A.R2Gn"   "IDH3A.R2Gn"   
## [17] "hsa-mir-105-1" "hsa-mir-105-2" "hsa-mir-122"   "hsa-mir-1226" 
## [21] "hsa-mir-1249"  "hsa-mir-1269"  "hsa-mir-141"   "hsa-mir-144"  
## [25] "hsa-mir-182"   "hsa-mir-183"   "hsa-mir-506"   "hsa-mir-509-3"
## [29] "hsa-mir-510"   "hsa-mir-518c"  "hsa-mir-525"   "hsa-mir-570"  
## [33] "hsa-mir-580"   "hsa-mir-663"   "hsa-mir-7-2"   "hsa-mir-760"  
## [1] "bicluster30"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "GATA3.RPPA"     "EGFR.RPPA"     
##  [5] "INPP4B.RPPA"    "ACVRL1.RPPA"    "PRDX1.RPPA"     "TFRC.RPPA"     
##  [9] "IGFBP2.R2Gn"    "ADAR.R2Gn"      "CTNNB1.R2Gn"    "RPS6.R2Gn"     
## [13] "PRKCA.R2Gn"     "SHC1.R2Gn"      "STAT5A.R2Gn"    "ERRFI1.R2Gn"   
## [17] "SYP.R2Gn"       "SQSTM1.R2Gn"    "hsa-mir-1245"   "hsa-mir-1270-1"
## [21] "hsa-mir-1270-2" "hsa-mir-1274b"  "hsa-mir-137"    "hsa-mir-138-1" 
## [25] "hsa-mir-138-2"  "hsa-mir-153-1"  "hsa-mir-204"    "hsa-mir-206"   
## [29] "hsa-mir-3610"   "hsa-mir-3678"   "hsa-mir-3917"   "hsa-mir-499"   
## [33] "hsa-mir-519a-2" "hsa-mir-551b"   "hsa-mir-570"    "hsa-mir-618"
f43_5 = top_x_percent(fabia_43)
## [1] "bicluster41"
##  [1] "G6PD.RPPA"      "ASNS.RPPA"      "RBM15.RPPA"     "PTEN.RPPA"     
##  [5] "ATM.RPPA"       "FASN.RPPA"      "INPP4B.RPPA"    "PDCD4.RPPA"    
##  [9] "CDK1.RPPA"      "VHL.RPPA"       "PRDX1.RPPA"     "EEF2.R2Gn"     
## [13] "TGM2.R2Gn"      "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1197"  
## [17] "hsa-mir-1269"   "hsa-mir-137"    "hsa-mir-146a"   "hsa-mir-200b"  
## [21] "hsa-mir-218-1"  "hsa-mir-329-1"  "hsa-mir-376a-2" "hsa-mir-377"   
## [25] "hsa-mir-380"    "hsa-mir-3926-1" "hsa-mir-3940"   "hsa-mir-487a"  
## [29] "hsa-mir-489"    "hsa-mir-516a-1" "hsa-mir-517a"   "hsa-mir-552"   
## [33] "hsa-mir-607"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [1] "bicluster21"
##  [1] "FASN.RPPA"      "TFRC.RPPA"      "CDH2.R2Gn"      "ADAR.R2Gn"     
##  [5] "hsa-mir-1193"   "hsa-mir-124-1"  "hsa-mir-124-3"  "hsa-mir-153-1" 
##  [9] "hsa-mir-153-2"  "hsa-mir-3199-1" "hsa-mir-3682"   "hsa-mir-383"   
## [13] "hsa-mir-3909"   "hsa-mir-3926-2" "hsa-mir-3934"   "hsa-mir-499"   
## [17] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [21] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [29] "hsa-mir-514-3"  "hsa-mir-516a-1" "hsa-mir-525"    "hsa-mir-548s"  
## [33] "hsa-mir-550a-2" "hsa-mir-580"    "hsa-mir-581"    "hsa-mir-605"   
## [1] "bicluster19"
##  [1] "ASNS.RPPA"      "INPP4B.RPPA"    "MYH11.RPPA"     "ERBB3.R2Gn"    
##  [5] "FN1.R2Gn"       "CTNNB1.R2Gn"    "SHC1.R2Gn"      "PARK7.R2Gn"    
##  [9] "TGM2.R2Gn"      "HSPA1A.R2Gn"    "hsa-mir-1293"   "hsa-mir-205"   
## [13] "hsa-mir-206"    "hsa-mir-30c-1"  "hsa-mir-329-1"  "hsa-mir-3682"  
## [17] "hsa-mir-380"    "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-487a"  
## [21] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"  
## [25] "hsa-mir-518b"   "hsa-mir-518c"   "hsa-mir-518f"   "hsa-mir-519a-1"
## [29] "hsa-mir-519a-2" "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-526b"  
## [33] "hsa-mir-541"    "hsa-mir-577"    "hsa-mir-656"    "hsa-mir-668"   
## [1] "bicluster38"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "PDCD4.RPPA"     "AR.RPPA"       
##  [5] "GAPDH.RPPA"     "MSH6.RPPA"      "KDR.R2Gn"       "ERBB3.R2Gn"    
##  [9] "IGFBP2.R2Gn"    "FASN.R2Gn"      "PRKCA.R2Gn"     "GAPDH.R2Gn"    
## [13] "COL6A1.R2Gn"    "HSPA1A.R2Gn"    "ERRFI1.R2Gn"    "hsa-mir-1179"  
## [17] "hsa-mir-1247"   "hsa-mir-135b"   "hsa-mir-187"    "hsa-mir-200a"  
## [21] "hsa-mir-2114"   "hsa-mir-216b"   "hsa-mir-224"    "hsa-mir-3130-1"
## [25] "hsa-mir-3170"   "hsa-mir-3934"   "hsa-mir-452"    "hsa-mir-488"   
## [29] "hsa-mir-517a"   "hsa-mir-519a-2" "hsa-mir-551b"   "hsa-mir-577"   
## [33] "hsa-mir-605"    "hsa-mir-636"    "hsa-mir-876"    "hsa-mir-939"   
## [1] "bicluster16"
##  [1] "GATA3.RPPA"     "PDCD4.RPPA"     "PREX1.RPPA"     "ERBB3.R2Gn"    
##  [5] "IGFBP2.R2Gn"    "PRKCA.R2Gn"     "GAPDH.R2Gn"     "HSPA1A.R2Gn"   
##  [9] "ERRFI1.R2Gn"    "RBM3.R2Gn"      "hsa-mir-105-2"  "hsa-mir-1197"  
## [13] "hsa-mir-1224"   "hsa-mir-135a-1" "hsa-mir-194-2"  "hsa-mir-200b"  
## [17] "hsa-mir-215"    "hsa-mir-335"    "hsa-mir-3678"   "hsa-mir-3909"  
## [21] "hsa-mir-3922"   "hsa-mir-431"    "hsa-mir-4326"   "hsa-mir-466"   
## [25] "hsa-mir-488"    "hsa-mir-504"    "hsa-mir-541"    "hsa-mir-550a-2"
## [29] "hsa-mir-585"    "hsa-mir-607"    "hsa-mir-656"    "hsa-mir-7-2"   
## [33] "hsa-mir-7-3"    "hsa-mir-765"    "hsa-mir-767"    "hsa-mir-876"   
## [1] "bicluster34"
##  [1] "PDCD4.RPPA"     "MSH6.RPPA"      "TFRC.RPPA"      "MSH2.RPPA"     
##  [5] "ERBB3.R2Gn"     "RPS6KA1.R2Gn"   "ADAR.R2Gn"      "EEF2.R2Gn"     
##  [9] "CTNNB1.R2Gn"    "SHC1.R2Gn"      "CHGA.R2Gn"      "hsa-mir-106a"  
## [13] "hsa-mir-124-1"  "hsa-mir-124-2"  "hsa-mir-124-3"  "hsa-mir-1248"  
## [17] "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1274b"  "hsa-mir-141"   
## [21] "hsa-mir-200b"   "hsa-mir-218-2"  "hsa-mir-296"    "hsa-mir-3130-1"
## [25] "hsa-mir-320c-2" "hsa-mir-34b"    "hsa-mir-3648"   "hsa-mir-3676"  
## [29] "hsa-mir-3687"   "hsa-mir-411"    "hsa-mir-511-2"  "hsa-mir-518b"  
## [33] "hsa-mir-552"    "hsa-mir-605"    "hsa-mir-887"    "hsa-mir-940"   
## [1] "bicluster42"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "PEA15.RPPA"     "EGFR.RPPA"     
##  [5] "TSC1.RPPA"      "PDCD4.RPPA"     "TFRC.RPPA"      "IGFBP2.R2Gn"   
##  [9] "CDH2.R2Gn"      "CTNNA1.R2Gn"    "NDRG1.R2Gn"     "SYP.R2Gn"      
## [13] "RPTOR.R2Gn"     "hsa-mir-1255a"  "hsa-mir-1269"   "hsa-mir-1270-1"
## [17] "hsa-mir-153-1"  "hsa-mir-153-2"  "hsa-mir-187"    "hsa-mir-29a"   
## [21] "hsa-mir-3166"   "hsa-mir-3173"   "hsa-mir-320c-2" "hsa-mir-346"   
## [25] "hsa-mir-3651"   "hsa-mir-3662"   "hsa-mir-3676"   "hsa-mir-552"   
## [29] "hsa-mir-570"    "hsa-mir-642a"   "hsa-mir-766"    "hsa-mir-876"   
## [33] "hsa-mir-885"    "hsa-mir-935"    "hsa-mir-937"    "hsa-mir-95"    
## [1] "bicluster22"
##  [1] "GATA3.RPPA"     "ATM.RPPA"       "AR.RPPA"        "ERBB3.R2Gn"    
##  [5] "PEA15.R2Gn"     "ADAR.R2Gn"      "EEF2.R2Gn"      "SERPINE1.R2Gn" 
##  [9] "SHC1.R2Gn"      "hsa-mir-105-1"  "hsa-mir-105-2"  "hsa-mir-133b"  
## [13] "hsa-mir-135b"   "hsa-mir-137"    "hsa-mir-200a"   "hsa-mir-206"   
## [17] "hsa-mir-3166"   "hsa-mir-3191"   "hsa-mir-3678"   "hsa-mir-3922"  
## [21] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"  
## [25] "hsa-mir-518b"   "hsa-mir-518f"   "hsa-mir-519a-2" "hsa-mir-520a"  
## [29] "hsa-mir-525"    "hsa-mir-548s"   "hsa-mir-579"    "hsa-mir-605"   
## [33] "hsa-mir-7-2"    "hsa-mir-708"    "hsa-mir-767"    "hsa-mir-891a"  
## [1] "bicluster25"
##  [1] "IGFBP2.RPPA"    "PTEN.RPPA"      "AR.RPPA"        "GAPDH.RPPA"    
##  [5] "IGFBP2.R2Gn"    "ITGA2.R2Gn"     "CTNNB1.R2Gn"    "PRRT2.R2Gn"    
##  [9] "BCL2L1.R2Gn"    "GAPDH.R2Gn"     "ERRFI1.R2Gn"    "hsa-mir-1262"  
## [13] "hsa-mir-190b"   "hsa-mir-196b"   "hsa-mir-296"    "hsa-mir-301b"  
## [17] "hsa-mir-3187"   "hsa-mir-320c-1" "hsa-mir-329-2"  "hsa-mir-3610"  
## [21] "hsa-mir-3620"   "hsa-mir-3928"   "hsa-mir-3940"   "hsa-mir-483"   
## [25] "hsa-mir-503"    "hsa-mir-516a-1" "hsa-mir-517a"   "hsa-mir-518c"  
## [29] "hsa-mir-548q"   "hsa-mir-580"    "hsa-mir-7-3"    "hsa-mir-765"   
## [33] "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-891a"   "hsa-mir-937"   
## [1] "bicluster10"
##  [1] "EGFR.RPPA"      "FASN.RPPA"      "TSC1.RPPA"      "GAPDH.RPPA"    
##  [5] "TFRC.RPPA"      "CDH2.R2Gn"      "FASN.R2Gn"      "EEF2.R2Gn"     
##  [9] "CTNNB1.R2Gn"    "PIK3R1.R2Gn"    "GAPDH.R2Gn"     "TUBA1B.R2Gn"   
## [13] "TFRC.R2Gn"      "hsa-mir-1228"   "hsa-mir-1269"   "hsa-mir-129-2" 
## [17] "hsa-mir-3173"   "hsa-mir-3651"   "hsa-mir-3655"   "hsa-mir-3922"  
## [21] "hsa-mir-3923"   "hsa-mir-3926-2" "hsa-mir-490"    "hsa-mir-506"   
## [25] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [29] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-2" "hsa-mir-514-1" 
## [33] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-585"    "hsa-mir-876"   
## [1] "bicluster2"
##  [1] "GATA3.RPPA"     "TTF1.RPPA"      "MYH11.RPPA"     "TFRC.RPPA"     
##  [5] "CTNNB1.R2Gn"    "PIK3R1.R2Gn"    "BCL2L1.R2Gn"    "TFRC.R2Gn"     
##  [9] "SQSTM1.R2Gn"    "hsa-mir-1-2"    "hsa-mir-1185-1" "hsa-mir-124-1" 
## [13] "hsa-mir-124-2"  "hsa-mir-301b"   "hsa-mir-3193"   "hsa-mir-3199-1"
## [17] "hsa-mir-329-2"  "hsa-mir-3610"   "hsa-mir-376a-2" "hsa-mir-380"   
## [21] "hsa-mir-3912"   "hsa-mir-411"    "hsa-mir-487a"   "hsa-mir-494"   
## [25] "hsa-mir-541"    "hsa-mir-570"    "hsa-mir-580"    "hsa-mir-585"   
## [29] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-7-2"    "hsa-mir-765"   
## [33] "hsa-mir-770"    "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-937"   
## [1] "bicluster13"
##  [1] "ASNS.RPPA"      "GATA3.RPPA"     "FN1.R2Gn"       "EEF2.R2Gn"     
##  [5] "RPS6.R2Gn"      "JUN.R2Gn"       "PARK7.R2Gn"     "CCND1.R2Gn"    
##  [9] "COL6A1.R2Gn"    "ANXA1.R2Gn"     "HSPA1A.R2Gn"    "SYP.R2Gn"      
## [13] "hsa-mir-1193"   "hsa-mir-124-2"  "hsa-mir-124-3"  "hsa-mir-202"   
## [17] "hsa-mir-206"    "hsa-mir-31"     "hsa-mir-320c-2" "hsa-mir-34b"   
## [21] "hsa-mir-3682"   "hsa-mir-383"    "hsa-mir-466"    "hsa-mir-490"   
## [25] "hsa-mir-511-1"  "hsa-mir-517a"   "hsa-mir-518f"   "hsa-mir-519a-2"
## [29] "hsa-mir-582"    "hsa-mir-592"    "hsa-mir-605"    "hsa-mir-618"   
## [33] "hsa-mir-653"    "hsa-mir-7-2"    "hsa-mir-891a"   "hsa-mir-937"   
## [1] "bicluster29"
##  [1] "PEA15.RPPA"     "EGFR.RPPA"      "FASN.RPPA"      "TTF1.RPPA"     
##  [5] "TFRC.RPPA"      "PREX1.RPPA"     "ERBB3.R2Gn"     "ITGA2.R2Gn"    
##  [9] "FASN.R2Gn"      "CTNNB1.R2Gn"    "CCND1.R2Gn"     "PIK3R2.R2Gn"   
## [13] "HSPA1A.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1258"   "hsa-mir-135a-1"
## [17] "hsa-mir-139"    "hsa-mir-187"    "hsa-mir-196b"   "hsa-mir-206"   
## [21] "hsa-mir-3166"   "hsa-mir-3170"   "hsa-mir-3199-1" "hsa-mir-320c-2"
## [25] "hsa-mir-335"    "hsa-mir-3678"   "hsa-mir-433"    "hsa-mir-487a"  
## [29] "hsa-mir-488"    "hsa-mir-517a"   "hsa-mir-525"    "hsa-mir-541"   
## [33] "hsa-mir-668"    "hsa-mir-7-3"    "hsa-mir-876"    "hsa-mir-940"   
## [1] "bicluster7"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "GATA3.RPPA"     "ATM.RPPA"      
##  [5] "EGFR.RPPA"      "GAPDH.RPPA"     "PDK1.RPPA"      "TFRC.RPPA"     
##  [9] "G6PD.R2Gn"      "ERBB3.R2Gn"     "FN1.R2Gn"       "SERPINE1.R2Gn" 
## [13] "CCND1.R2Gn"     "GAPDH.R2Gn"     "NOTCH3.R2Gn"    "SYP.R2Gn"      
## [17] "PARP1.R2Gn"     "IDH3A.R2Gn"     "hsa-mir-105-1"  "hsa-mir-105-2" 
## [21] "hsa-mir-1185-1" "hsa-mir-1226"   "hsa-mir-1254"   "hsa-mir-1293"  
## [25] "hsa-mir-149"    "hsa-mir-184"    "hsa-mir-2114"   "hsa-mir-30c-1" 
## [29] "hsa-mir-3130-1" "hsa-mir-3662"   "hsa-mir-3922"   "hsa-mir-510"   
## [33] "hsa-mir-518b"   "hsa-mir-548v"   "hsa-mir-550a-2" "hsa-mir-582"   
## [1] "bicluster31"
##  [1] "G6PD.RPPA"      "ATM.RPPA"       "EGFR.RPPA"      "GAPDH.RPPA"    
##  [5] "MYH11.RPPA"     "ERBB3.R2Gn"     "CDKN1A.R2Gn"    "YBX1.R2Gn"     
##  [9] "RPS6.R2Gn"      "TGM2.R2Gn"      "GAPDH.R2Gn"     "HSPA1A.R2Gn"   
## [13] "hsa-mir-1249"   "hsa-mir-1293"   "hsa-mir-135a-1" "hsa-mir-200a"  
## [17] "hsa-mir-200b"   "hsa-mir-3130-1" "hsa-mir-3199-1" "hsa-mir-33b"   
## [21] "hsa-mir-3610"   "hsa-mir-3682"   "hsa-mir-3687"   "hsa-mir-372"   
## [25] "hsa-mir-3909"   "hsa-mir-3934"   "hsa-mir-516a-1" "hsa-mir-518c"  
## [29] "hsa-mir-525"    "hsa-mir-550a-2" "hsa-mir-579"    "hsa-mir-580"   
## [33] "hsa-mir-585"    "hsa-mir-605"    "hsa-mir-624"    "hsa-mir-7-3"   
## [1] "bicluster43"
##  [1] "PTEN.RPPA"      "FASN.RPPA"      "PDCD4.RPPA"     "MSH6.RPPA"     
##  [5] "KDR.R2Gn"       "ERBB3.R2Gn"     "AKT2.R2Gn"      "FASN.R2Gn"     
##  [9] "RET.R2Gn"       "hsa-mir-1269"   "hsa-mir-129-1"  "hsa-mir-129-2" 
## [13] "hsa-mir-1291"   "hsa-mir-138-2"  "hsa-mir-196a-2" "hsa-mir-200a"  
## [17] "hsa-mir-2114"   "hsa-mir-3170"   "hsa-mir-3191"   "hsa-mir-3193"  
## [21] "hsa-mir-320c-2" "hsa-mir-3610"   "hsa-mir-3687"   "hsa-mir-3909"  
## [25] "hsa-mir-4326"   "hsa-mir-466"    "hsa-mir-488"    "hsa-mir-510"   
## [29] "hsa-mir-552"    "hsa-mir-585"    "hsa-mir-607"    "hsa-mir-615"   
## [33] "hsa-mir-636"    "hsa-mir-7-2"    "hsa-mir-876"    "hsa-mir-95"    
## [1] "bicluster27"
##  [1] "GATA3.RPPA"     "ACVRL1.RPPA"    "GAPDH.RPPA"     "ERBB3.R2Gn"    
##  [5] "FN1.R2Gn"       "CTNNB1.R2Gn"    "CCND1.R2Gn"     "NDRG1.R2Gn"    
##  [9] "HSPA1A.R2Gn"    "ERRFI1.R2Gn"    "SYP.R2Gn"       "PARP1.R2Gn"    
## [13] "hsa-mir-1245"   "hsa-mir-1255a"  "hsa-mir-1270-1" "hsa-mir-1270-2"
## [17] "hsa-mir-133b"   "hsa-mir-184"    "hsa-mir-29c"    "hsa-mir-3934"  
## [21] "hsa-mir-483"    "hsa-mir-499"    "hsa-mir-507"    "hsa-mir-510"   
## [25] "hsa-mir-511-1"  "hsa-mir-511-2"  "hsa-mir-513c"   "hsa-mir-514b"  
## [29] "hsa-mir-516a-1" "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-570"   
## [33] "hsa-mir-579"    "hsa-mir-580"    "hsa-mir-675"    "hsa-mir-767"   
## [1] "bicluster20"
##  [1] "IGFBP2.RPPA"    "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [5] "AKT3.R2Gn"      "EIF4G1.R2Gn"    "ADAR.R2Gn"      "RPS6.R2Gn"     
##  [9] "ANLN.R2Gn"      "STMN1.R2Gn"     "TGM2.R2Gn"      "CDK1.R2Gn"     
## [13] "CTNNA1.R2Gn"    "CAV1.R2Gn"      "TYMS.R2Gn"      "TUBA1B.R2Gn"   
## [17] "FOXM1.R2Gn"     "COL6A1.R2Gn"    "YWHAB.R2Gn"     "EZH2.R2Gn"     
## [21] "CDKN2A.R2Gn"    "hsa-mir-1245"   "hsa-mir-1247"   "hsa-mir-138-1" 
## [25] "hsa-mir-138-2"  "hsa-mir-26a-1"  "hsa-mir-3190"   "hsa-mir-3191"  
## [29] "hsa-mir-3199-1" "hsa-mir-372"    "hsa-mir-3923"   "hsa-mir-3926-1"
## [33] "hsa-mir-466"    "hsa-mir-499"    "hsa-mir-507"    "hsa-mir-876"   
## [1] "bicluster37"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "TTF1.RPPA"      "GAPDH.RPPA"    
##  [5] "MSH6.RPPA"      "PREX1.RPPA"     "DIRAS3.R2Gn"    "FASN.R2Gn"     
##  [9] "FOXO3.R2Gn"     "GAPDH.R2Gn"     "SQSTM1.R2Gn"    "hsa-mir-1255a" 
## [13] "hsa-mir-1292"   "hsa-mir-196a-2" "hsa-mir-218-1"  "hsa-mir-3191"  
## [17] "hsa-mir-3687"   "hsa-mir-4326"   "hsa-mir-488"    "hsa-mir-489"   
## [21] "hsa-mir-499"    "hsa-mir-504"    "hsa-mir-510"    "hsa-mir-513a-1"
## [25] "hsa-mir-516b-1" "hsa-mir-518c"   "hsa-mir-519a-2" "hsa-mir-548s"  
## [29] "hsa-mir-584"    "hsa-mir-653"    "hsa-mir-656"    "hsa-mir-675"   
## [33] "hsa-mir-760"    "hsa-mir-770"    "hsa-mir-873"    "hsa-mir-876"   
## [1] "bicluster5"
##  [1] "G6PD.RPPA"      "ASNS.RPPA"      "RBM15.RPPA"     "ATM.RPPA"      
##  [5] "EGFR.RPPA"      "TSC1.RPPA"      "GAPDH.RPPA"     "TFRC.RPPA"     
##  [9] "CDKN1A.R2Gn"    "PEA15.R2Gn"     "ADAR.R2Gn"      "SHC1.R2Gn"     
## [13] "GAPDH.R2Gn"     "HSPA1A.R2Gn"    "hsa-mir-1179"   "hsa-mir-1255a" 
## [17] "hsa-mir-1305"   "hsa-mir-200a"   "hsa-mir-200b"   "hsa-mir-206"   
## [21] "hsa-mir-216b"   "hsa-mir-217"    "hsa-mir-218-1"  "hsa-mir-219-1" 
## [25] "hsa-mir-26a-1"  "hsa-mir-296"    "hsa-mir-3173"   "hsa-mir-3676"  
## [29] "hsa-mir-3687"   "hsa-mir-3909"   "hsa-mir-3926-1" "hsa-mir-3940"  
## [33] "hsa-mir-548q"   "hsa-mir-552"    "hsa-mir-580"    "hsa-mir-636"   
## [1] "bicluster28"
##  [1] "TFRC.RPPA"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [5] "GAPDH.R2Gn"     "TFRC.R2Gn"      "HSPA1A.R2Gn"    "ERRFI1.R2Gn"   
##  [9] "hsa-mir-1185-1" "hsa-mir-1197"   "hsa-mir-1249"   "hsa-mir-1254"  
## [13] "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1292"  
## [17] "hsa-mir-135a-1" "hsa-mir-138-1"  "hsa-mir-138-2"  "hsa-mir-346"   
## [21] "hsa-mir-3610"   "hsa-mir-3687"   "hsa-mir-380"    "hsa-mir-3926-1"
## [25] "hsa-mir-433"    "hsa-mir-466"    "hsa-mir-488"    "hsa-mir-490"   
## [29] "hsa-mir-499"    "hsa-mir-525"    "hsa-mir-541"    "hsa-mir-543"   
## [33] "hsa-mir-615"    "hsa-mir-770"    "hsa-mir-885"    "hsa-mir-9-3"   
## [1] "bicluster9"
##  [1] "G6PD.RPPA"      "GATA3.RPPA"     "EGFR.RPPA"      "INPP4B.RPPA"   
##  [5] "VHL.RPPA"       "MYH11.RPPA"     "NF2.RPPA"       "TFRC.RPPA"     
##  [9] "G6PD.R2Gn"      "CDH2.R2Gn"      "TGM2.R2Gn"      "HSPA1A.R2Gn"   
## [13] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1228"  
## [17] "hsa-mir-1247"   "hsa-mir-1269"   "hsa-mir-206"    "hsa-mir-2277"  
## [21] "hsa-mir-301b"   "hsa-mir-320c-2" "hsa-mir-376a-2" "hsa-mir-411"   
## [25] "hsa-mir-499"    "hsa-mir-516a-1" "hsa-mir-516b-1" "hsa-mir-517a"  
## [29] "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-548v"   "hsa-mir-577"   
## [33] "hsa-mir-607"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"   
## [1] "bicluster12"
##  [1] "IGFBP2.RPPA"    "GAPDH.RPPA"     "TFRC.RPPA"      "MSH2.RPPA"     
##  [5] "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "CDKN1A.R2Gn"    "PDCD4.R2Gn"    
##  [9] "HSPA1A.R2Gn"    "SNAI2.R2Gn"     "SQSTM1.R2Gn"    "hsa-mir-1185-1"
## [13] "hsa-mir-1262"   "hsa-mir-1269"   "hsa-mir-129-2"  "hsa-mir-1293"  
## [17] "hsa-mir-200a"   "hsa-mir-31"     "hsa-mir-3199-1" "hsa-mir-320c-2"
## [21] "hsa-mir-34b"    "hsa-mir-3655"   "hsa-mir-3687"   "hsa-mir-3923"  
## [25] "hsa-mir-3934"   "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-4326"  
## [29] "hsa-mir-510"    "hsa-mir-548q"   "hsa-mir-656"    "hsa-mir-891a"  
## [33] "hsa-mir-9-1"    "hsa-mir-9-2"    "hsa-mir-9-3"    "hsa-mir-937"   
## [1] "bicluster1"
##  [1] "G6PD.RPPA"      "BRCA2.RPPA"     "FASN.RPPA"      "ACVRL1.RPPA"   
##  [5] "GAPDH.RPPA"     "TFRC.RPPA"      "IGFBP2.R2Gn"    "NFE2L2.R2Gn"   
##  [9] "GAPDH.R2Gn"     "hsa-mir-106a"   "hsa-mir-1228"   "hsa-mir-124-3" 
## [13] "hsa-mir-1269"   "hsa-mir-1270-2" "hsa-mir-1274b"  "hsa-mir-1292"  
## [17] "hsa-mir-135a-1" "hsa-mir-135a-2" "hsa-mir-139"    "hsa-mir-215"   
## [21] "hsa-mir-3130-1" "hsa-mir-3173"   "hsa-mir-320c-1" "hsa-mir-346"   
## [25] "hsa-mir-34b"    "hsa-mir-3619"   "hsa-mir-3690"   "hsa-mir-380"   
## [29] "hsa-mir-516b-1" "hsa-mir-525"    "hsa-mir-580"    "hsa-mir-607"   
## [33] "hsa-mir-618"    "hsa-mir-636"    "hsa-mir-639"    "hsa-mir-765"   
## [1] "bicluster23"
##  [1] "IGFBP2.RPPA"    "PTEN.RPPA"      "EGFR.RPPA"      "FASN.RPPA"     
##  [5] "MYH11.RPPA"     "PDK1.RPPA"      "ERCC1.RPPA"     "ADAR.R2Gn"     
##  [9] "EGFR.R2Gn"      "FASN.R2Gn"      "SHC1.R2Gn"      "PIK3R1.R2Gn"   
## [13] "TUBA1B.R2Gn"    "ERRFI1.R2Gn"    "SYP.R2Gn"       "hsa-mir-1251"  
## [17] "hsa-mir-135a-1" "hsa-mir-187"    "hsa-mir-196a-2" "hsa-mir-219-1" 
## [21] "hsa-mir-2277"   "hsa-mir-26a-1"  "hsa-mir-30c-1"  "hsa-mir-3173"  
## [25] "hsa-mir-3651"   "hsa-mir-3676"   "hsa-mir-3687"   "hsa-mir-548s"  
## [29] "hsa-mir-551b"   "hsa-mir-570"    "hsa-mir-605"    "hsa-mir-636"   
## [33] "hsa-mir-659"    "hsa-mir-663"    "hsa-mir-7-2"    "hsa-mir-767"   
## [1] "bicluster4"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "G6PD.R2Gn"      "IGFBP2.R2Gn"   
##  [5] "RPS6.R2Gn"      "PTK2.R2Gn"      "CCND1.R2Gn"     "PIK3R2.R2Gn"   
##  [9] "ERRFI1.R2Gn"    "hsa-mir-105-1"  "hsa-mir-105-2"  "hsa-mir-1247"  
## [13] "hsa-mir-1248"   "hsa-mir-1249"   "hsa-mir-200a"   "hsa-mir-204"   
## [17] "hsa-mir-2114"   "hsa-mir-216b"   "hsa-mir-218-1"  "hsa-mir-301b"  
## [21] "hsa-mir-326"    "hsa-mir-34b"    "hsa-mir-3610"   "hsa-mir-3614"  
## [25] "hsa-mir-3909"   "hsa-mir-489"    "hsa-mir-511-1"  "hsa-mir-511-2" 
## [29] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-548s"   "hsa-mir-561"   
## [33] "hsa-mir-615"    "hsa-mir-627"    "hsa-mir-642a"   "hsa-mir-891a"  
## [1] "bicluster36"
##  [1] "IGFBP2.RPPA"    "TTF1.RPPA"      "IGFBP2.R2Gn"    "ITGA2.R2Gn"    
##  [5] "COL6A1.R2Gn"    "TFRC.R2Gn"      "HSPA1A.R2Gn"    "SYP.R2Gn"      
##  [9] "RET.R2Gn"       "hsa-mir-1193"   "hsa-mir-122"    "hsa-mir-124-2" 
## [13] "hsa-mir-1248"   "hsa-mir-1249"   "hsa-mir-1255a"  "hsa-mir-1305"  
## [17] "hsa-mir-187"    "hsa-mir-2114"   "hsa-mir-30c-1"  "hsa-mir-3173"  
## [21] "hsa-mir-3187"   "hsa-mir-3199-2" "hsa-mir-3610"   "hsa-mir-372"   
## [25] "hsa-mir-3926-2" "hsa-mir-429"    "hsa-mir-433"    "hsa-mir-517a"  
## [29] "hsa-mir-551b"   "hsa-mir-552"    "hsa-mir-585"    "hsa-mir-7-3"   
## [33] "hsa-mir-876"    "hsa-mir-9-1"    "hsa-mir-9-2"    "hsa-mir-9-3"   
## [1] "bicluster14"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "NF2.RPPA"       "ERBB3.R2Gn"    
##  [5] "IGFBP2.R2Gn"    "FN1.R2Gn"       "EEF2.R2Gn"      "CTNNB1.R2Gn"   
##  [9] "BCL2.R2Gn"      "CCND1.R2Gn"     "PIK3R1.R2Gn"    "GAPDH.R2Gn"    
## [13] "COL6A1.R2Gn"    "HSPA1A.R2Gn"    "SYP.R2Gn"       "hsa-mir-1249"  
## [17] "hsa-mir-1262"   "hsa-mir-1269"   "hsa-mir-153-1"  "hsa-mir-200a"  
## [21] "hsa-mir-200b"   "hsa-mir-26a-1"  "hsa-mir-301b"   "hsa-mir-329-1" 
## [25] "hsa-mir-3690"   "hsa-mir-3926-1" "hsa-mir-488"    "hsa-mir-516a-1"
## [29] "hsa-mir-516a-2" "hsa-mir-517a"   "hsa-mir-520a"   "hsa-mir-526b"  
## [33] "hsa-mir-585"    "hsa-mir-7-2"    "hsa-mir-7-3"    "hsa-mir-9-3"   
## [1] "bicluster17"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "TSC1.RPPA"      "TTF1.RPPA"     
##  [5] "MYH11.RPPA"     "ERBB3.R2Gn"     "PRKCD.R2Gn"     "FN1.R2Gn"      
##  [9] "PEA15.R2Gn"     "ADAR.R2Gn"      "SERPINE1.R2Gn"  "SHC1.R2Gn"     
## [13] "CCND1.R2Gn"     "ANXA7.R2Gn"     "hsa-mir-124-3"  "hsa-mir-1255a" 
## [17] "hsa-mir-1270-1" "hsa-mir-1292"   "hsa-mir-218-1"  "hsa-mir-3199-2"
## [21] "hsa-mir-3610"   "hsa-mir-3652"   "hsa-mir-3926-2" "hsa-mir-4326"  
## [25] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-3" 
## [29] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-514-1"  "hsa-mir-514-2" 
## [33] "hsa-mir-514-3"  "hsa-mir-636"    "hsa-mir-760"    "hsa-mir-9-3"   
## [1] "bicluster3"
##  [1] "PDCD4.RPPA"     "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "ADAR.R2Gn"     
##  [5] "SERPINE1.R2Gn"  "MYH9.R2Gn"      "HSPA1A.R2Gn"    "hsa-mir-124-3" 
##  [9] "hsa-mir-1248"   "hsa-mir-1270-1" "hsa-mir-129-2"  "hsa-mir-1292"  
## [13] "hsa-mir-1304"   "hsa-mir-182"    "hsa-mir-183"    "hsa-mir-2114"  
## [17] "hsa-mir-320c-2" "hsa-mir-3676"   "hsa-mir-3678"   "hsa-mir-3682"  
## [21] "hsa-mir-499"    "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1"
## [25] "hsa-mir-518b"   "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"  
## [29] "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-570"    "hsa-mir-580"   
## [33] "hsa-mir-624"    "hsa-mir-7-2"    "hsa-mir-765"    "hsa-mir-96"    
## [1] "bicluster35"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "GATA3.RPPA"     "PEA15.RPPA"    
##  [5] "PDCD4.RPPA"     "AR.RPPA"        "GAPDH.RPPA"     "IGFBP2.R2Gn"   
##  [9] "CDH2.R2Gn"      "EEF2.R2Gn"      "YWHAE.R2Gn"     "PRKCA.R2Gn"    
## [13] "PRRT2.R2Gn"     "CAV1.R2Gn"      "GAPDH.R2Gn"     "HSPA1A.R2Gn"   
## [17] "hsa-mir-105-1"  "hsa-mir-200b"   "hsa-mir-204"    "hsa-mir-216a"  
## [21] "hsa-mir-296"    "hsa-mir-301b"   "hsa-mir-3191"   "hsa-mir-320c-1"
## [25] "hsa-mir-3926-2" "hsa-mir-3940"   "hsa-mir-488"    "hsa-mir-516b-1"
## [29] "hsa-mir-517a"   "hsa-mir-545"    "hsa-mir-548v"   "hsa-mir-552"   
## [33] "hsa-mir-7-3"    "hsa-mir-760"    "hsa-mir-891a"   "hsa-mir-937"   
## [1] "bicluster39"
##  [1] "VHL.RPPA"      "GAPDH.RPPA"    "MSH6.RPPA"     "TFRC.RPPA"    
##  [5] "EEF2.R2Gn"     "YWHAE.R2Gn"    "PDCD4.R2Gn"    "PARK7.R2Gn"   
##  [9] "PIK3R1.R2Gn"   "PRDX1.R2Gn"    "TYMS.R2Gn"     "NDRG1.R2Gn"   
## [13] "TFRC.R2Gn"     "ERRFI1.R2Gn"   "SQSTM1.R2Gn"   "hsa-mir-105-1"
## [17] "hsa-mir-1247"  "hsa-mir-1248"  "hsa-mir-1251"  "hsa-mir-1255a"
## [21] "hsa-mir-1269"  "hsa-mir-129-2" "hsa-mir-141"   "hsa-mir-183"  
## [25] "hsa-mir-218-1" "hsa-mir-3144"  "hsa-mir-3928"  "hsa-mir-570"  
## [29] "hsa-mir-579"   "hsa-mir-607"   "hsa-mir-627"   "hsa-mir-643"  
## [33] "hsa-mir-7-3"   "hsa-mir-873"   "hsa-mir-876"   "hsa-mir-939"  
## [1] "bicluster26"
##  [1] "ATM.RPPA"       "EGFR.RPPA"      "PDCD4.RPPA"     "TFRC.RPPA"     
##  [5] "ERBB3.R2Gn"     "FN1.R2Gn"       "CDH2.R2Gn"      "SERPINE1.R2Gn" 
##  [9] "PIK3R1.R2Gn"    "TFRC.R2Gn"      "ERRFI1.R2Gn"    "hsa-mir-1249"  
## [13] "hsa-mir-1274b"  "hsa-mir-190b"   "hsa-mir-216b"   "hsa-mir-217"   
## [17] "hsa-mir-224"    "hsa-mir-296"    "hsa-mir-3173"   "hsa-mir-3199-1"
## [21] "hsa-mir-320c-2" "hsa-mir-3662"   "hsa-mir-3923"   "hsa-mir-452"   
## [25] "hsa-mir-488"    "hsa-mir-499"    "hsa-mir-516a-1" "hsa-mir-516a-2"
## [29] "hsa-mir-516b-1" "hsa-mir-525"    "hsa-mir-548q"   "hsa-mir-561"   
## [33] "hsa-mir-577"    "hsa-mir-580"    "hsa-mir-663"    "hsa-mir-675"   
## [1] "bicluster40"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "EGFR.RPPA"      "MSH6.RPPA"     
##  [5] "MYH11.RPPA"     "IGFBP2.R2Gn"    "FN1.R2Gn"       "EEF2.R2Gn"     
##  [9] "TGM2.R2Gn"      "MYH11.R2Gn"     "SQSTM1.R2Gn"    "hsa-mir-1-2"   
## [13] "hsa-mir-122"    "hsa-mir-1249"   "hsa-mir-1270-1" "hsa-mir-129-1" 
## [17] "hsa-mir-129-2"  "hsa-mir-200a"   "hsa-mir-3166"   "hsa-mir-3199-1"
## [21] "hsa-mir-429"    "hsa-mir-452"    "hsa-mir-466"    "hsa-mir-489"   
## [25] "hsa-mir-490"    "hsa-mir-517a"   "hsa-mir-526b"   "hsa-mir-551b"  
## [29] "hsa-mir-639"    "hsa-mir-656"    "hsa-mir-675"    "hsa-mir-7-2"   
## [33] "hsa-mir-767"    "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-937"   
## [1] "bicluster18"
##  [1] "GATA3.RPPA"     "PEA15.RPPA"     "MSH6.RPPA"      "MYH11.RPPA"    
##  [5] "DIRAS3.R2Gn"    "ERBB3.R2Gn"     "CDH2.R2Gn"      "ITGA2.R2Gn"    
##  [9] "ADAR.R2Gn"      "CTNNB1.R2Gn"    "RPS6.R2Gn"      "TGM2.R2Gn"     
## [13] "GAPDH.R2Gn"     "BID.R2Gn"       "TFRC.R2Gn"      "SYP.R2Gn"      
## [17] "PARP1.R2Gn"     "TFF1.R2Gn"      "hsa-mir-124-3"  "hsa-mir-1254"  
## [21] "hsa-mir-1255a"  "hsa-mir-1269"   "hsa-mir-1304"   "hsa-mir-3130-1"
## [25] "hsa-mir-3652"   "hsa-mir-3678"   "hsa-mir-383"    "hsa-mir-3926-2"
## [29] "hsa-mir-452"    "hsa-mir-510"    "hsa-mir-516a-1" "hsa-mir-518b"  
## [33] "hsa-mir-548b"   "hsa-mir-639"    "hsa-mir-656"    "hsa-mir-7-2"   
## [1] "bicluster6"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "RBM15.RPPA"     "EGFR.RPPA"     
##  [5] "FASN.RPPA"      "MSH6.RPPA"      "IGFBP2.R2Gn"    "CDH2.R2Gn"     
##  [9] "YWHAZ.R2Gn"     "NDRG1.R2Gn"     "HSPA1A.R2Gn"    "IDH3A.R2Gn"    
## [13] "hsa-mir-1228"   "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-1292"  
## [17] "hsa-mir-135b"   "hsa-mir-138-1"  "hsa-mir-138-2"  "hsa-mir-1909"  
## [21] "hsa-mir-216a"   "hsa-mir-217"    "hsa-mir-296"    "hsa-mir-30c-1" 
## [25] "hsa-mir-3144"   "hsa-mir-3614"   "hsa-mir-3620"   "hsa-mir-3912"  
## [29] "hsa-mir-3940"   "hsa-mir-548v"   "hsa-mir-585"    "hsa-mir-605"   
## [33] "hsa-mir-765"    "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-939"   
## [1] "bicluster30"
##  [1] "EGFR.RPPA"      "INPP4B.RPPA"    "ACVRL1.RPPA"    "PRDX1.RPPA"    
##  [5] "TFRC.RPPA"      "ADAR.R2Gn"      "PCNA.R2Gn"      "CTNNB1.R2Gn"   
##  [9] "RPS6.R2Gn"      "SHC1.R2Gn"      "CCND1.R2Gn"     "SYP.R2Gn"      
## [13] "RBM3.R2Gn"      "RET.R2Gn"       "hsa-mir-105-2"  "hsa-mir-124-1" 
## [17] "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1274b"  "hsa-mir-1292"  
## [21] "hsa-mir-133b"   "hsa-mir-153-1"  "hsa-mir-206"    "hsa-mir-2114"  
## [25] "hsa-mir-3610"   "hsa-mir-3614"   "hsa-mir-3678"   "hsa-mir-3917"  
## [29] "hsa-mir-499"    "hsa-mir-519a-2" "hsa-mir-570"    "hsa-mir-577"   
## [33] "hsa-mir-639"    "hsa-mir-7-2"    "hsa-mir-767"    "hsa-mir-940"   
## [1] "bicluster8"
##  [1] "G6PD.RPPA"      "ASNS.RPPA"      "PTEN.RPPA"      "PEA15.RPPA"    
##  [5] "ATM.RPPA"       "MYH11.RPPA"     "TFRC.RPPA"      "KDR.R2Gn"      
##  [9] "ERBB3.R2Gn"     "FN1.R2Gn"       "AKT2.R2Gn"      "CDH2.R2Gn"     
## [13] "EEF2.R2Gn"      "SERPINE1.R2Gn"  "TGM2.R2Gn"      "PDK1.R2Gn"     
## [17] "hsa-mir-122"    "hsa-mir-141"    "hsa-mir-149"    "hsa-mir-30c-1" 
## [21] "hsa-mir-3170"   "hsa-mir-3191"   "hsa-mir-329-2"  "hsa-mir-346"   
## [25] "hsa-mir-3652"   "hsa-mir-3682"   "hsa-mir-3687"   "hsa-mir-3909"  
## [29] "hsa-mir-3940"   "hsa-mir-511-2"  "hsa-mir-519a-2" "hsa-mir-520a"  
## [33] "hsa-mir-548s"   "hsa-mir-592"    "hsa-mir-639"    "hsa-mir-765"   
## [1] "bicluster11"
##  [1] "G6PD.RPPA"      "PEA15.RPPA"     "ACVRL1.RPPA"    "VHL.RPPA"      
##  [5] "AR.RPPA"        "MYH11.RPPA"     "G6PD.R2Gn"      "ERBB3.R2Gn"    
##  [9] "FN1.R2Gn"       "EEF2.R2Gn"      "TGM2.R2Gn"      "COL6A1.R2Gn"   
## [13] "CHGA.R2Gn"      "hsa-mir-1270-1" "hsa-mir-129-2"  "hsa-mir-1293"  
## [17] "hsa-mir-1909"   "hsa-mir-26a-1"  "hsa-mir-320c-1" "hsa-mir-329-1" 
## [21] "hsa-mir-3610"   "hsa-mir-3655"   "hsa-mir-3676"   "hsa-mir-4326"  
## [25] "hsa-mir-507"    "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-518b"  
## [29] "hsa-mir-525"    "hsa-mir-570"    "hsa-mir-580"    "hsa-mir-592"   
## [33] "hsa-mir-639"    "hsa-mir-655"    "hsa-mir-765"    "hsa-mir-940"   
## [1] "bicluster15"
##  [1] "PEA15.RPPA"     "FASN.RPPA"      "PDCD4.RPPA"     "VHL.RPPA"      
##  [5] "ERRFI1.R2Gn"    "SYP.R2Gn"       "SQSTM1.R2Gn"    "hsa-mir-1258"  
##  [9] "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1274b"  "hsa-mir-153-1" 
## [13] "hsa-mir-2114"   "hsa-mir-218-1"  "hsa-mir-301b"   "hsa-mir-3173"  
## [17] "hsa-mir-320c-1" "hsa-mir-346"    "hsa-mir-3662"   "hsa-mir-483"   
## [21] "hsa-mir-507"    "hsa-mir-516a-1" "hsa-mir-516b-1" "hsa-mir-517a"  
## [25] "hsa-mir-518b"   "hsa-mir-519a-2" "hsa-mir-548b"   "hsa-mir-551b"  
## [29] "hsa-mir-552"    "hsa-mir-561"    "hsa-mir-570"    "hsa-mir-670"   
## [33] "hsa-mir-7-2"    "hsa-mir-765"    "hsa-mir-876"    "hsa-mir-935"   
## [1] "bicluster32"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "MSH6.RPPA"      "DIRAS3.R2Gn"   
##  [5] "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "FN1.R2Gn"       "CDKN1A.R2Gn"   
##  [9] "SERPINE1.R2Gn"  "CTNNB1.R2Gn"    "LCN2.R2Gn"      "RPS6.R2Gn"     
## [13] "JUN.R2Gn"       "HSPA1A.R2Gn"    "IDH3A.R2Gn"     "hsa-mir-105-2" 
## [17] "hsa-mir-1249"   "hsa-mir-1269"   "hsa-mir-133b"   "hsa-mir-141"   
## [21] "hsa-mir-144"    "hsa-mir-2114"   "hsa-mir-3170"   "hsa-mir-3926-2"
## [25] "hsa-mir-451"    "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a"  
## [29] "hsa-mir-518c"   "hsa-mir-561"    "hsa-mir-570"    "hsa-mir-605"   
## [33] "hsa-mir-663"    "hsa-mir-708"    "hsa-mir-760"    "hsa-mir-935"   
## [1] "bicluster33"
##  [1] "PDCD4.RPPA"     "FN1.R2Gn"       "CTNNB1.R2Gn"    "GAPDH.R2Gn"    
##  [5] "HSPA1A.R2Gn"    "hsa-mir-1185-2" "hsa-mir-1247"   "hsa-mir-1249"  
##  [9] "hsa-mir-133b"   "hsa-mir-137"    "hsa-mir-138-1"  "hsa-mir-187"   
## [13] "hsa-mir-196a-2" "hsa-mir-200a"   "hsa-mir-216b"   "hsa-mir-3173"  
## [17] "hsa-mir-3191"   "hsa-mir-3193"   "hsa-mir-346"    "hsa-mir-3678"  
## [21] "hsa-mir-383"    "hsa-mir-490"    "hsa-mir-499"    "hsa-mir-504"   
## [25] "hsa-mir-510"    "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1"
## [29] "hsa-mir-517a"   "hsa-mir-526b"   "hsa-mir-615"    "hsa-mir-765"   
## [33] "hsa-mir-876"    "hsa-mir-891a"   "hsa-mir-939"    "hsa-mir-940"   
## [1] "bicluster24"
##  [1] "EGFR.RPPA"      "TTF1.RPPA"      "XBP1.RPPA"      "MSH6.RPPA"     
##  [5] "NF2.RPPA"       "PDK1.RPPA"      "CTNNB1.R2Gn"    "RPS6.R2Gn"     
##  [9] "PRKCA.R2Gn"     "PIK3R1.R2Gn"    "NDRG1.R2Gn"     "HSPA1A.R2Gn"   
## [13] "CHGA.R2Gn"      "hsa-mir-1197"   "hsa-mir-1258"   "hsa-mir-1270-1"
## [17] "hsa-mir-1304"   "hsa-mir-1305"   "hsa-mir-200a"   "hsa-mir-205"   
## [21] "hsa-mir-3610"   "hsa-mir-3909"   "hsa-mir-507"    "hsa-mir-511-1" 
## [25] "hsa-mir-516a-1" "hsa-mir-516b-1" "hsa-mir-518b"   "hsa-mir-548q"  
## [29] "hsa-mir-548v"   "hsa-mir-552"    "hsa-mir-570"    "hsa-mir-577"   
## [33] "hsa-mir-605"    "hsa-mir-653"    "hsa-mir-656"    "hsa-mir-937"
top_5_perc_result = list("1bc" = f1_5,
                         "2bc" = f2_5,
                         "3bc" = f3_5,
                         "5bc" = f5_5,
                         "10bc" = f10_5,
                         "15bc" = f15_5,
                         "20bc" = f20_5,
                         "35bc" = f35_5,
                         "43bc" = f43_5)

saveRDS(top_5_perc_result, file = "data/sel_features/results_fabia_top_5_percent.rds")

Top 10%

f1_10 = top_x_percent(fabia_1, perct = 10)
## [1] "bicluster1"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "INPP4B.RPPA"    "TTF1.RPPA"     
##  [5] "PRDX1.RPPA"     "G6PD.R2Gn"      "TGM2.R2Gn"      "SQSTM1.R2Gn"   
##  [9] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"   "hsa-mir-1197"  
## [13] "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"   
## [17] "hsa-mir-205"    "hsa-mir-206"    "hsa-mir-299"    "hsa-mir-323"   
## [21] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"   
## [25] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [29] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [33] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"   
## [37] "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"   
## [41] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-466"    "hsa-mir-485"   
## [45] "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-489"    "hsa-mir-493"   
## [49] "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-516a-2"
## [53] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-518f"  
## [57] "hsa-mir-520a"   "hsa-mir-526b"   "hsa-mir-539"    "hsa-mir-541"   
## [61] "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-654"    "hsa-mir-655"   
## [65] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-758"   
## [69] "hsa-mir-770"    "hsa-mir-876"    "hsa-mir-889"
f2_10 = top_x_percent(fabia_2, perct = 10)
## [1] "bicluster2"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "TTF1.RPPA"      "TGM2.R2Gn"     
##  [5] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
##  [9] "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"   
## [13] "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [17] "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"   
## [21] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"  
## [25] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"   
## [29] "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"   
## [33] "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"   
## [37] "hsa-mir-466"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"  
## [41] "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"   
## [45] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [49] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [53] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [57] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-539"   
## [61] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-605"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster1"
##  [1] "GATA3.RPPA"     "FN1.R2Gn"       "CDH2.R2Gn"      "CTNNB1.R2Gn"   
##  [5] "CCND1.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
##  [9] "hsa-mir-124-3"  "hsa-mir-1269"   "hsa-mir-127"    "hsa-mir-134"   
## [13] "hsa-mir-135b"   "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-206"   
## [17] "hsa-mir-2114"   "hsa-mir-296"    "hsa-mir-299"    "hsa-mir-3144"  
## [21] "hsa-mir-3166"   "hsa-mir-3199-1" "hsa-mir-323"    "hsa-mir-323b"  
## [25] "hsa-mir-329-1"  "hsa-mir-3655"   "hsa-mir-370"    "hsa-mir-376a-1"
## [29] "hsa-mir-376a-2" "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [33] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-3923"  
## [37] "hsa-mir-3926-2" "hsa-mir-409"    "hsa-mir-411"    "hsa-mir-429"   
## [41] "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"   
## [45] "hsa-mir-496"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [49] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [53] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [57] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [61] "hsa-mir-517a"   "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-580"   
## [65] "hsa-mir-582"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [69] "hsa-mir-668"    "hsa-mir-758"    "hsa-mir-889"
f3_10 = top_x_percent(fabia_3, perct = 10)
## [1] "bicluster2"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "FASN.RPPA"      "TTF1.RPPA"     
##  [5] "VHL.RPPA"       "TGM2.R2Gn"      "SQSTM1.R2Gn"    "hsa-mir-1185-1"
##  [9] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-1258"   "hsa-mir-127"   
## [13] "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-299"   
## [17] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [21] "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1"
## [25] "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"   
## [29] "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"   
## [33] "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"   
## [37] "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-466"   
## [41] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-494"   
## [45] "hsa-mir-496"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [49] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [53] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [57] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [61] "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-605"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster3"
##  [1] "PTEN.RPPA"      "GATA3.RPPA"     "TSC1.RPPA"      "IGFBP2.R2Gn"   
##  [5] "FN1.R2Gn"       "AKT2.R2Gn"      "CDH2.R2Gn"      "GATA3.R2Gn"    
##  [9] "PEA15.R2Gn"     "ADAR.R2Gn"      "CTNNB1.R2Gn"    "SHC1.R2Gn"     
## [13] "CCND1.R2Gn"     "GAPDH.R2Gn"     "RPTOR.R2Gn"     "hsa-mir-1185-1"
## [17] "hsa-mir-1185-2" "hsa-mir-124-1"  "hsa-mir-124-3"  "hsa-mir-1258"  
## [21] "hsa-mir-1269"   "hsa-mir-1293"   "hsa-mir-135b"   "hsa-mir-139"   
## [25] "hsa-mir-183"    "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-296"   
## [29] "hsa-mir-3144"   "hsa-mir-3166"   "hsa-mir-3193"   "hsa-mir-3199-1"
## [33] "hsa-mir-320c-2" "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-3655"  
## [37] "hsa-mir-3662"   "hsa-mir-376a-2" "hsa-mir-3923"   "hsa-mir-3926-2"
## [41] "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-485"    "hsa-mir-487a"  
## [45] "hsa-mir-494"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [49] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [53] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [57] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [61] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-518b"   "hsa-mir-519a-2"
## [65] "hsa-mir-525"    "hsa-mir-543"    "hsa-mir-580"    "hsa-mir-582"   
## [69] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"   
## [1] "bicluster1"
##  [1] "G6PD.RPPA"      "ERBB3.R2Gn"     "FN1.R2Gn"       "CDH2.R2Gn"     
##  [5] "CTNNB1.R2Gn"    "TGM2.R2Gn"      "CCND1.R2Gn"     "hsa-mir-1185-1"
##  [9] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-1269"   "hsa-mir-127"   
## [13] "hsa-mir-1270-2" "hsa-mir-134"    "hsa-mir-135b"   "hsa-mir-136"   
## [17] "hsa-mir-154"    "hsa-mir-206"    "hsa-mir-299"    "hsa-mir-3144"  
## [21] "hsa-mir-3166"   "hsa-mir-3199-1" "hsa-mir-323"    "hsa-mir-323b"  
## [25] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-3655"  
## [29] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [33] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [37] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-3923"  
## [41] "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-431"   
## [45] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"  
## [49] "hsa-mir-487b"   "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"   
## [53] "hsa-mir-507"    "hsa-mir-510"    "hsa-mir-517a"   "hsa-mir-518b"  
## [57] "hsa-mir-520a"   "hsa-mir-526b"   "hsa-mir-539"    "hsa-mir-541"   
## [61] "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-580"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"
f5_10 = top_x_percent(fabia_5, perct = 10)
## [1] "bicluster2"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "INPP4B.RPPA"    "TTF1.RPPA"     
##  [5] "PRDX1.RPPA"     "MSH6.RPPA"      "G6PD.R2Gn"      "TGM2.R2Gn"     
##  [9] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"  
## [13] "hsa-mir-1197"   "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"   
## [17] "hsa-mir-146a"   "hsa-mir-154"    "hsa-mir-299"    "hsa-mir-323"   
## [21] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"   
## [25] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [29] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [33] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"   
## [37] "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"   
## [41] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-466"    "hsa-mir-485"   
## [45] "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-489"    "hsa-mir-493"   
## [49] "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-516a-2"
## [53] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-518f"  
## [57] "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-577"   
## [61] "hsa-mir-605"    "hsa-mir-653"    "hsa-mir-654"    "hsa-mir-655"   
## [65] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-758"   
## [69] "hsa-mir-770"    "hsa-mir-876"    "hsa-mir-889"   
## [1] "bicluster5"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "PTEN.RPPA"      "GATA3.RPPA"    
##  [5] "FASN.RPPA"      "TSC1.RPPA"      "VHL.RPPA"       "TFRC.RPPA"     
##  [9] "AKT1S1.R2Gn"    "IGFBP2.R2Gn"    "FN1.R2Gn"       "AKT2.R2Gn"     
## [13] "CDH2.R2Gn"      "GATA3.R2Gn"     "PEA15.R2Gn"     "CTNNB1.R2Gn"   
## [17] "SHC1.R2Gn"      "CCND1.R2Gn"     "PIK3R1.R2Gn"    "XIAP.R2Gn"     
## [21] "PXN.R2Gn"       "RPTOR.R2Gn"     "hsa-mir-124-1"  "hsa-mir-124-3" 
## [25] "hsa-mir-1258"   "hsa-mir-1291"   "hsa-mir-135b"   "hsa-mir-139"   
## [29] "hsa-mir-182"    "hsa-mir-183"    "hsa-mir-196b"   "hsa-mir-206"   
## [33] "hsa-mir-2114"   "hsa-mir-218-2"  "hsa-mir-296"    "hsa-mir-3166"  
## [37] "hsa-mir-3170"   "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-3655"  
## [41] "hsa-mir-3662"   "hsa-mir-3690"   "hsa-mir-3909"   "hsa-mir-3923"  
## [45] "hsa-mir-3926-2" "hsa-mir-429"    "hsa-mir-466"    "hsa-mir-506"   
## [49] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [53] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [57] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [61] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-548b"   "hsa-mir-548q"  
## [65] "hsa-mir-552"    "hsa-mir-582"    "hsa-mir-605"    "hsa-mir-615"   
## [69] "hsa-mir-675"    "hsa-mir-887"    "hsa-mir-935"   
## [1] "bicluster1"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "TTF1.RPPA"      "TGM2.R2Gn"     
##  [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"   "hsa-mir-1197"  
##  [9] "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"   
## [13] "hsa-mir-2114"   "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"  
## [17] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"   
## [21] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"  
## [25] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"   
## [29] "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"   
## [33] "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [37] "hsa-mir-433"    "hsa-mir-466"    "hsa-mir-485"    "hsa-mir-487a"  
## [41] "hsa-mir-487b"   "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"   
## [45] "hsa-mir-496"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [49] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [53] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [57] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [61] "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster4"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "GATA3.RPPA"     "EGFR.RPPA"     
##  [5] "G6PD.R2Gn"      "IGFBP2.R2Gn"    "FN1.R2Gn"       "CTNNB1.R2Gn"   
##  [9] "CCND1.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-124-3" 
## [13] "hsa-mir-1269"   "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-135b"  
## [17] "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-206"    "hsa-mir-2114"  
## [21] "hsa-mir-296"    "hsa-mir-299"    "hsa-mir-3144"   "hsa-mir-3166"  
## [25] "hsa-mir-3199-1" "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [29] "hsa-mir-329-2"  "hsa-mir-3655"   "hsa-mir-3662"   "hsa-mir-370"   
## [33] "hsa-mir-376a-2" "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [37] "hsa-mir-380"    "hsa-mir-382"    "hsa-mir-3923"   "hsa-mir-409"   
## [41] "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-433"    "hsa-mir-485"   
## [45] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-506"   
## [49] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [53] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [57] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [61] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-543"    "hsa-mir-548q"  
## [65] "hsa-mir-577"    "hsa-mir-582"    "hsa-mir-654"    "hsa-mir-655"   
## [69] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-889"   
## [1] "bicluster3"
##  [1] "G6PD.RPPA"      "INPP4B.RPPA"    "CDH2.R2Gn"      "CTNNB1.R2Gn"   
##  [5] "TGM2.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
##  [9] "hsa-mir-1269"   "hsa-mir-127"    "hsa-mir-133b"   "hsa-mir-134"   
## [13] "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-205"    "hsa-mir-206"   
## [17] "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [21] "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-3678"   "hsa-mir-369"   
## [25] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"  
## [29] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"   
## [33] "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"   
## [37] "hsa-mir-411"    "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"   
## [41] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-494"   
## [45] "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-516a-1" "hsa-mir-516a-2"
## [49] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-518c"  
## [53] "hsa-mir-518f"   "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"  
## [57] "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-539"    "hsa-mir-541"   
## [61] "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-580"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"
f10_10 = top_x_percent(fabia_10, perct = 10)
## [1] "bicluster9"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "INPP4B.RPPA"    "TTF1.RPPA"     
##  [5] "VHL.RPPA"       "PRDX1.RPPA"     "FASN.R2Gn"      "TGM2.R2Gn"     
##  [9] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
## [13] "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-146a"  
## [17] "hsa-mir-154"    "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"  
## [21] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"   
## [25] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"  
## [29] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"   
## [33] "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"   
## [37] "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [41] "hsa-mir-433"    "hsa-mir-466"    "hsa-mir-485"    "hsa-mir-487a"  
## [45] "hsa-mir-487b"   "hsa-mir-489"    "hsa-mir-493"    "hsa-mir-494"   
## [49] "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-510"    "hsa-mir-513a-1"
## [53] "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-539"    "hsa-mir-541"   
## [57] "hsa-mir-543"    "hsa-mir-548v"   "hsa-mir-577"    "hsa-mir-605"   
## [61] "hsa-mir-653"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [65] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-758"    "hsa-mir-770"   
## [69] "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-889"   
## [1] "bicluster10"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "FASN.RPPA"      "TSC1.RPPA"     
##  [5] "TTF1.RPPA"      "VHL.RPPA"       "AR.RPPA"        "TFRC.RPPA"     
##  [9] "AKT1S1.R2Gn"    "IGFBP2.R2Gn"    "AKT2.R2Gn"      "FASN.R2Gn"     
## [13] "CTNNB1.R2Gn"    "CCND1.R2Gn"     "PIK3R1.R2Gn"    "PXN.R2Gn"      
## [17] "RPTOR.R2Gn"     "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1193"  
## [21] "hsa-mir-1258"   "hsa-mir-127"    "hsa-mir-1291"   "hsa-mir-136"   
## [25] "hsa-mir-2114"   "hsa-mir-323"    "hsa-mir-329-1"  "hsa-mir-329-2" 
## [29] "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1"
## [33] "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-377"    "hsa-mir-380"   
## [37] "hsa-mir-3909"   "hsa-mir-3922"   "hsa-mir-3926-2" "hsa-mir-412"   
## [41] "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-466"    "hsa-mir-487a"  
## [45] "hsa-mir-487b"   "hsa-mir-493"    "hsa-mir-506"    "hsa-mir-507"   
## [49] "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3" 
## [53] "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"  
## [57] "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [61] "hsa-mir-514b"   "hsa-mir-541"    "hsa-mir-605"    "hsa-mir-615"   
## [65] "hsa-mir-653"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [69] "hsa-mir-665"    "hsa-mir-770"    "hsa-mir-876"   
## [1] "bicluster7"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "GATA3.RPPA"     "TSC1.RPPA"     
##  [5] "TFRC.RPPA"      "IGFBP2.R2Gn"    "FN1.R2Gn"       "CDH2.R2Gn"     
##  [9] "GATA3.R2Gn"     "CTNNB1.R2Gn"    "CCND1.R2Gn"     "XIAP.R2Gn"     
## [13] "RPTOR.R2Gn"     "SNAI2.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1185-2"
## [17] "hsa-mir-124-1"  "hsa-mir-124-3"  "hsa-mir-1258"   "hsa-mir-1269"  
## [21] "hsa-mir-135b"   "hsa-mir-154"    "hsa-mir-183"    "hsa-mir-187"   
## [25] "hsa-mir-199a-2" "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-218-2" 
## [29] "hsa-mir-296"    "hsa-mir-29c"    "hsa-mir-3144"   "hsa-mir-3166"  
## [33] "hsa-mir-3191"   "hsa-mir-3193"   "hsa-mir-3199-1" "hsa-mir-320c-2"
## [37] "hsa-mir-323b"   "hsa-mir-3655"   "hsa-mir-3662"   "hsa-mir-3690"  
## [41] "hsa-mir-377"    "hsa-mir-3923"   "hsa-mir-3926-2" "hsa-mir-411"   
## [45] "hsa-mir-429"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"   
## [49] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [53] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [57] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [61] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-543"   
## [65] "hsa-mir-548q"   "hsa-mir-582"    "hsa-mir-605"    "hsa-mir-655"   
## [69] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-887"   
## [1] "bicluster2"
##  [1] "G6PD.RPPA"      "GATA3.RPPA"     "G6PD.R2Gn"      "FN1.R2Gn"      
##  [5] "CTNNB1.R2Gn"    "TGM2.R2Gn"      "CCND1.R2Gn"     "hsa-mir-1185-1"
##  [9] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-127"    "hsa-mir-134"   
## [13] "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-206"    "hsa-mir-299"   
## [17] "hsa-mir-3193"   "hsa-mir-3199-1" "hsa-mir-323"    "hsa-mir-323b"  
## [21] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"   
## [25] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"  
## [29] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"   
## [33] "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"   
## [37] "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [41] "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"  
## [45] "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"   
## [49] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"  
## [53] "hsa-mir-518b"   "hsa-mir-518c"   "hsa-mir-518f"   "hsa-mir-519a-2"
## [57] "hsa-mir-520a"   "hsa-mir-526b"   "hsa-mir-539"    "hsa-mir-541"   
## [61] "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-580"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster1"
##  [1] "G6PD.RPPA"      "ASNS.RPPA"      "FASN.RPPA"      "TTF1.RPPA"     
##  [5] "FN1.R2Gn"       "YWHAE.R2Gn"     "TGM2.R2Gn"      "hsa-mir-1185-1"
##  [9] "hsa-mir-1185-2" "hsa-mir-1193"   "hsa-mir-1197"   "hsa-mir-1269"  
## [13] "hsa-mir-127"    "hsa-mir-129-2"  "hsa-mir-134"    "hsa-mir-136"   
## [17] "hsa-mir-137"    "hsa-mir-146a"   "hsa-mir-154"    "hsa-mir-155"   
## [21] "hsa-mir-206"    "hsa-mir-26a-1"  "hsa-mir-296"    "hsa-mir-299"   
## [25] "hsa-mir-3144"   "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [29] "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"   
## [33] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"  
## [37] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"   
## [41] "hsa-mir-382"    "hsa-mir-3926-1" "hsa-mir-409"    "hsa-mir-410"   
## [45] "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [49] "hsa-mir-433"    "hsa-mir-452"    "hsa-mir-485"    "hsa-mir-487a"  
## [53] "hsa-mir-487b"   "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"   
## [57] "hsa-mir-496"    "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"   
## [61] "hsa-mir-544"    "hsa-mir-577"    "hsa-mir-582"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster3"
##  [1] "FASN.RPPA"      "PDCD4.RPPA"     "AKT1S1.R2Gn"    "FN1.R2Gn"      
##  [5] "TGM2.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
##  [9] "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"   
## [13] "hsa-mir-205"    "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"  
## [17] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-370"    "hsa-mir-376a-1"
## [21] "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"   
## [25] "hsa-mir-380"    "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"   
## [29] "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [33] "hsa-mir-433"    "hsa-mir-466"    "hsa-mir-485"    "hsa-mir-487a"  
## [37] "hsa-mir-487b"   "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-506"   
## [41] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [45] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [49] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [53] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-516a-1" "hsa-mir-516a-2"
## [57] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-518f"  
## [61] "hsa-mir-520a"   "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"   
## [65] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
## [69] "hsa-mir-668"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster8"
##  [1] "G6PD.RPPA"      "G6PD.R2Gn"      "ERBB3.R2Gn"     "FN1.R2Gn"      
##  [5] "TGM2.R2Gn"      "ERRFI1.R2Gn"    "hsa-mir-105-2"  "hsa-mir-1185-1"
##  [9] "hsa-mir-1185-2" "hsa-mir-1193"   "hsa-mir-1197"   "hsa-mir-1269"  
## [13] "hsa-mir-127"    "hsa-mir-1270-2" "hsa-mir-134"    "hsa-mir-136"   
## [17] "hsa-mir-154"    "hsa-mir-205"    "hsa-mir-206"    "hsa-mir-299"   
## [21] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [25] "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1"
## [29] "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"   
## [33] "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"   
## [37] "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"   
## [41] "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-466"   
## [45] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-493"   
## [49] "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-516a-1"
## [53] "hsa-mir-516a-2" "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-519a-2"
## [57] "hsa-mir-520a"   "hsa-mir-526b"   "hsa-mir-539"    "hsa-mir-541"   
## [61] "hsa-mir-543"    "hsa-mir-544"    "hsa-mir-654"    "hsa-mir-655"   
## [65] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-758"   
## [69] "hsa-mir-767"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster6"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "FASN.RPPA"      "VHL.RPPA"      
##  [5] "PRDX1.RPPA"     "GAPDH.RPPA"     "MSH6.RPPA"      "TFRC.RPPA"     
##  [9] "PREX1.RPPA"     "AKT1S1.R2Gn"    "IGFBP2.R2Gn"    "AKT2.R2Gn"     
## [13] "CDH2.R2Gn"      "GATA3.R2Gn"     "FASN.R2Gn"      "EEF2.R2Gn"     
## [17] "CTNNB1.R2Gn"    "GAPDH.R2Gn"     "COL6A1.R2Gn"    "ANXA1.R2Gn"    
## [21] "HSPA1A.R2Gn"    "PXN.R2Gn"       "SYP.R2Gn"       "RPTOR.R2Gn"    
## [25] "SQSTM1.R2Gn"    "hsa-mir-1193"   "hsa-mir-124-1"  "hsa-mir-124-3" 
## [29] "hsa-mir-1258"   "hsa-mir-1270-1" "hsa-mir-135b"   "hsa-mir-137"   
## [33] "hsa-mir-146a"   "hsa-mir-153-1"  "hsa-mir-153-2"  "hsa-mir-196a-1"
## [37] "hsa-mir-196a-2" "hsa-mir-26a-1"  "hsa-mir-3166"   "hsa-mir-3682"  
## [41] "hsa-mir-3690"   "hsa-mir-3922"   "hsa-mir-3926-2" "hsa-mir-3934"  
## [45] "hsa-mir-3940"   "hsa-mir-412"    "hsa-mir-466"    "hsa-mir-506"   
## [49] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [53] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [57] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [61] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-544"    "hsa-mir-548q"  
## [65] "hsa-mir-548v"   "hsa-mir-552"    "hsa-mir-592"    "hsa-mir-605"   
## [69] "hsa-mir-653"    "hsa-mir-708"    "hsa-mir-9-3"   
## [1] "bicluster5"
##  [1] "ASNS.RPPA"      "EGFR.RPPA"      "CDH2.R2Gn"      "PEA15.R2Gn"    
##  [5] "ADAR.R2Gn"      "CTNNB1.R2Gn"    "CCND1.R2Gn"     "GAPDH.R2Gn"    
##  [9] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"   "hsa-mir-1197"  
## [13] "hsa-mir-1255a"  "hsa-mir-1269"   "hsa-mir-127"    "hsa-mir-134"   
## [17] "hsa-mir-136"    "hsa-mir-138-1"  "hsa-mir-139"    "hsa-mir-154"   
## [21] "hsa-mir-218-1"  "hsa-mir-218-2"  "hsa-mir-299"    "hsa-mir-320b-2"
## [25] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [29] "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1"
## [33] "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"   
## [37] "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"   
## [41] "hsa-mir-3909"   "hsa-mir-3926-1" "hsa-mir-409"    "hsa-mir-410"   
## [45] "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [49] "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"  
## [53] "hsa-mir-488"    "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"   
## [57] "hsa-mir-496"    "hsa-mir-499"    "hsa-mir-539"    "hsa-mir-541"   
## [61] "hsa-mir-543"    "hsa-mir-552"    "hsa-mir-585"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-758"   
## [69] "hsa-mir-770"    "hsa-mir-887"    "hsa-mir-889"   
## [1] "bicluster4"
##  [1] "G6PD.RPPA"      "PEA15.RPPA"     "VHL.RPPA"       "NF2.RPPA"      
##  [5] "G6PD.R2Gn"      "PEA15.R2Gn"     "PCNA.R2Gn"      "ANLN.R2Gn"     
##  [9] "SHC1.R2Gn"      "CTNNA1.R2Gn"    "GAPDH.R2Gn"     "TUBA1B.R2Gn"   
## [13] "TFRC.R2Gn"      "PXN.R2Gn"       "hsa-mir-105-1"  "hsa-mir-105-2" 
## [17] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1249"   "hsa-mir-1269"  
## [21] "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"   
## [25] "hsa-mir-195"    "hsa-mir-216b"   "hsa-mir-217"    "hsa-mir-2277"  
## [29] "hsa-mir-296"    "hsa-mir-299"    "hsa-mir-3200"   "hsa-mir-323"   
## [33] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"   
## [37] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376c"  
## [41] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-382"   
## [45] "hsa-mir-3926-2" "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-483"   
## [49] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-496"   
## [53] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-511-2"  "hsa-mir-539"   
## [57] "hsa-mir-543"    "hsa-mir-548q"   "hsa-mir-552"    "hsa-mir-577"   
## [61] "hsa-mir-598"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [65] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-767"    "hsa-mir-770"   
## [69] "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-940"
f15_10 = top_x_percent(fabia_15, perct = 10)
## [1] "bicluster10"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "FASN.RPPA"      "TSC1.RPPA"     
##  [5] "VHL.RPPA"       "TFRC.RPPA"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
##  [9] "AKT2.R2Gn"      "CDH2.R2Gn"      "CTNNB1.R2Gn"    "PIK3R1.R2Gn"   
## [13] "GAPDH.R2Gn"     "PXN.R2Gn"       "RPTOR.R2Gn"     "hsa-mir-1185-1"
## [17] "hsa-mir-1193"   "hsa-mir-1197"   "hsa-mir-1224"   "hsa-mir-1258"  
## [21] "hsa-mir-2114"   "hsa-mir-3166"   "hsa-mir-3199-1" "hsa-mir-320c-2"
## [25] "hsa-mir-323"    "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-376a-1"
## [29] "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-3909"   "hsa-mir-3922"  
## [33] "hsa-mir-3923"   "hsa-mir-3926-2" "hsa-mir-410"    "hsa-mir-412"   
## [37] "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-466"    "hsa-mir-487a"  
## [41] "hsa-mir-487b"   "hsa-mir-490"    "hsa-mir-493"    "hsa-mir-496"   
## [45] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [49] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [53] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [57] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-541"   
## [61] "hsa-mir-552"    "hsa-mir-585"    "hsa-mir-605"    "hsa-mir-655"   
## [65] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-767"   
## [69] "hsa-mir-770"    "hsa-mir-876"    "hsa-mir-891a"  
## [1] "bicluster9"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "INPP4B.RPPA"    "TTF1.RPPA"     
##  [5] "VHL.RPPA"       "G6PD.R2Gn"      "TGM2.R2Gn"      "PIK3R1.R2Gn"   
##  [9] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
## [13] "hsa-mir-1269"   "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"   
## [17] "hsa-mir-154"    "hsa-mir-216b"   "hsa-mir-299"    "hsa-mir-323"   
## [21] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"   
## [25] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [29] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [33] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"   
## [37] "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"   
## [41] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"  
## [45] "hsa-mir-487b"   "hsa-mir-489"    "hsa-mir-493"    "hsa-mir-494"   
## [49] "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-507"    "hsa-mir-510"   
## [53] "hsa-mir-513a-2" "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1"
## [57] "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-520a"   "hsa-mir-539"   
## [61] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster13"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "FN1.R2Gn"       "TGM2.R2Gn"     
##  [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"   "hsa-mir-1197"  
##  [9] "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"   
## [13] "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [17] "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"   
## [21] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"  
## [25] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"   
## [29] "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"   
## [33] "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"   
## [37] "hsa-mir-466"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"  
## [41] "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"   
## [45] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-2" 
## [49] "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"  
## [53] "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [57] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [61] "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster2"
##  [1] "G6PD.RPPA"      "TTF1.RPPA"      "G6PD.R2Gn"      "ERBB3.R2Gn"    
##  [5] "CTNNB1.R2Gn"    "TGM2.R2Gn"      "CCND1.R2Gn"     "SQSTM1.R2Gn"   
##  [9] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-124-1" 
## [13] "hsa-mir-124-3"  "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"   
## [17] "hsa-mir-154"    "hsa-mir-206"    "hsa-mir-299"    "hsa-mir-3166"  
## [21] "hsa-mir-3193"   "hsa-mir-3199-1" "hsa-mir-323"    "hsa-mir-323b"  
## [25] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"   
## [29] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"  
## [33] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"   
## [37] "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"   
## [41] "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [45] "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"  
## [49] "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"   
## [53] "hsa-mir-516a-1" "hsa-mir-517a"   "hsa-mir-518c"   "hsa-mir-520a"  
## [57] "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-577"   
## [61] "hsa-mir-580"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [65] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-670"    "hsa-mir-758"   
## [69] "hsa-mir-770"    "hsa-mir-889"    "hsa-mir-935"   
## [1] "bicluster11"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "GATA3.RPPA"     "G6PD.R2Gn"     
##  [5] "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "FN1.R2Gn"       "GATA3.R2Gn"    
##  [9] "CTNNB1.R2Gn"    "CCND1.R2Gn"     "RPTOR.R2Gn"     "hsa-mir-1185-1"
## [13] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-124-1"  "hsa-mir-124-3" 
## [17] "hsa-mir-1258"   "hsa-mir-1270-1" "hsa-mir-135b"   "hsa-mir-154"   
## [21] "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-296"    "hsa-mir-3166"  
## [25] "hsa-mir-3199-1" "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [29] "hsa-mir-3655"   "hsa-mir-370"    "hsa-mir-376a-2" "hsa-mir-377"   
## [33] "hsa-mir-380"    "hsa-mir-382"    "hsa-mir-3923"   "hsa-mir-3926-2"
## [37] "hsa-mir-411"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"   
## [41] "hsa-mir-496"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [45] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [49] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [53] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [57] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a"   "hsa-mir-519a-2"
## [61] "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-541"   
## [65] "hsa-mir-543"    "hsa-mir-582"    "hsa-mir-655"    "hsa-mir-656"   
## [69] "hsa-mir-668"    "hsa-mir-887"    "hsa-mir-889"   
## [1] "bicluster1"
##  [1] "G6PD.RPPA"      "ERBB3.R2Gn"     "CDH2.R2Gn"      "TGM2.R2Gn"     
##  [5] "PRDX1.R2Gn"     "hsa-mir-106a"   "hsa-mir-1185-1" "hsa-mir-1185-2"
##  [9] "hsa-mir-1197"   "hsa-mir-124-1"  "hsa-mir-124-2"  "hsa-mir-124-3" 
## [13] "hsa-mir-127"    "hsa-mir-1270-2" "hsa-mir-129-2"  "hsa-mir-134"   
## [17] "hsa-mir-136"    "hsa-mir-137"    "hsa-mir-138-1"  "hsa-mir-154"   
## [21] "hsa-mir-194-1"  "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-296"   
## [25] "hsa-mir-299"    "hsa-mir-3144"   "hsa-mir-3199-1" "hsa-mir-323"   
## [29] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"   
## [33] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [37] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [41] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"   
## [45] "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"   
## [49] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"  
## [53] "hsa-mir-487b"   "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"   
## [57] "hsa-mir-496"    "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"   
## [61] "hsa-mir-577"    "hsa-mir-580"    "hsa-mir-582"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster12"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "GATA3.RPPA"     "IGFBP2.R2Gn"   
##  [5] "FN1.R2Gn"       "GATA3.R2Gn"     "CTNNB1.R2Gn"    "CCND1.R2Gn"    
##  [9] "SNAI2.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-124-1" 
## [13] "hsa-mir-124-3"  "hsa-mir-1258"   "hsa-mir-1269"   "hsa-mir-134"   
## [17] "hsa-mir-135b"   "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-183"   
## [21] "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-296"    "hsa-mir-299"   
## [25] "hsa-mir-3144"   "hsa-mir-3166"   "hsa-mir-3191"   "hsa-mir-3193"  
## [29] "hsa-mir-3199-1" "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [33] "hsa-mir-3655"   "hsa-mir-3662"   "hsa-mir-3690"   "hsa-mir-370"   
## [37] "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-382"    "hsa-mir-3923"  
## [41] "hsa-mir-3926-2" "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-485"   
## [45] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-506"    "hsa-mir-507"   
## [49] "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3" 
## [53] "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"  
## [57] "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [61] "hsa-mir-514b"   "hsa-mir-543"    "hsa-mir-548q"   "hsa-mir-577"   
## [65] "hsa-mir-580"    "hsa-mir-605"    "hsa-mir-654"    "hsa-mir-655"   
## [69] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-935"   
## [1] "bicluster7"
##  [1] "PTEN.RPPA"      "GATA3.RPPA"     "TSC1.RPPA"      "TFRC.RPPA"     
##  [5] "FN1.R2Gn"       "AKT2.R2Gn"      "CDH2.R2Gn"      "GATA3.R2Gn"    
##  [9] "PEA15.R2Gn"     "CTNNB1.R2Gn"    "CCND1.R2Gn"     "hsa-mir-1185-1"
## [13] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-124-1"  "hsa-mir-124-3" 
## [17] "hsa-mir-1258"   "hsa-mir-1269"   "hsa-mir-135b"   "hsa-mir-139"   
## [21] "hsa-mir-154"    "hsa-mir-183"    "hsa-mir-184"    "hsa-mir-196b"  
## [25] "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-218-2"  "hsa-mir-296"   
## [29] "hsa-mir-3166"   "hsa-mir-3193"   "hsa-mir-3199-1" "hsa-mir-320c-2"
## [33] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-3655"   "hsa-mir-3662"  
## [37] "hsa-mir-376a-2" "hsa-mir-377"    "hsa-mir-3923"   "hsa-mir-3926-2"
## [41] "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-433"    "hsa-mir-485"   
## [45] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-506"    "hsa-mir-507"   
## [49] "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3" 
## [53] "hsa-mir-510"    "hsa-mir-511-2"  "hsa-mir-513a-1" "hsa-mir-513a-2"
## [57] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [61] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-517a"   "hsa-mir-543"   
## [65] "hsa-mir-548q"   "hsa-mir-577"    "hsa-mir-582"    "hsa-mir-655"   
## [69] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-887"   
## [1] "bicluster15"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "PTEN.RPPA"      "FASN.RPPA"     
##  [5] "TSC1.RPPA"      "TTF1.RPPA"      "VHL.RPPA"       "AR.RPPA"       
##  [9] "PRDX1.RPPA"     "MSH6.RPPA"      "G6PD.R2Gn"      "AKT1S1.R2Gn"   
## [13] "AKT2.R2Gn"      "MET.R2Gn"       "FASN.R2Gn"      "CTNNB1.R2Gn"   
## [17] "PRKCA.R2Gn"     "STMN1.R2Gn"     "TGM2.R2Gn"      "PIK3R1.R2Gn"   
## [21] "ANXA1.R2Gn"     "PXN.R2Gn"       "SQSTM1.R2Gn"    "hsa-mir-1258"  
## [25] "hsa-mir-1291"   "hsa-mir-130a"   "hsa-mir-139"    "hsa-mir-153-1" 
## [29] "hsa-mir-196a-1" "hsa-mir-196a-2" "hsa-mir-196b"   "hsa-mir-2114"  
## [33] "hsa-mir-216b"   "hsa-mir-218-1"  "hsa-mir-3170"   "hsa-mir-3173"  
## [37] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-376a-2" "hsa-mir-377"   
## [41] "hsa-mir-380"    "hsa-mir-3926-2" "hsa-mir-3940"   "hsa-mir-466"   
## [45] "hsa-mir-487a"   "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [49] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [53] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [57] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [61] "hsa-mir-552"    "hsa-mir-605"    "hsa-mir-607"    "hsa-mir-615"   
## [65] "hsa-mir-653"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
## [69] "hsa-mir-770"    "hsa-mir-873"    "hsa-mir-876"   
## [1] "bicluster8"
##  [1] "G6PD.RPPA"      "GAPDH.RPPA"     "ERBB3.R2Gn"     "FN1.R2Gn"      
##  [5] "AKT2.R2Gn"      "BIRC2.R2Gn"     "XRCC5.R2Gn"     "ACACB.R2Gn"    
##  [9] "GAPDH.R2Gn"     "HSPA1A.R2Gn"    "ERRFI1.R2Gn"    "PARP1.R2Gn"    
## [13] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-122"   
## [17] "hsa-mir-1248"   "hsa-mir-1269"   "hsa-mir-127"    "hsa-mir-136"   
## [21] "hsa-mir-154"    "hsa-mir-184"    "hsa-mir-187"    "hsa-mir-192"   
## [25] "hsa-mir-194-1"  "hsa-mir-194-2"  "hsa-mir-2114"   "hsa-mir-299"   
## [29] "hsa-mir-3130-1" "hsa-mir-3170"   "hsa-mir-323"    "hsa-mir-323b"  
## [33] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-370"   
## [37] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376c"   "hsa-mir-377"   
## [41] "hsa-mir-380"    "hsa-mir-382"    "hsa-mir-3922"   "hsa-mir-409"   
## [45] "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"   
## [49] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-466"    "hsa-mir-485"   
## [53] "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-494"    "hsa-mir-496"   
## [57] "hsa-mir-517a"   "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"   
## [61] "hsa-mir-548s"   "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [65] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-758"    "hsa-mir-770"   
## [69] "hsa-mir-887"    "hsa-mir-889"    "hsa-mir-939"   
## [1] "bicluster3"
##  [1] "PEA15.RPPA"     "PDCD4.RPPA"     "GAPDH.RPPA"     "KDR.R2Gn"      
##  [5] "ERBB3.R2Gn"     "FN1.R2Gn"       "CDH2.R2Gn"      "BECN1.R2Gn"    
##  [9] "GATA3.R2Gn"     "BIRC2.R2Gn"     "ADAR.R2Gn"      "SERPINE1.R2Gn" 
## [13] "STMN1.R2Gn"     "TGM2.R2Gn"      "CCND1.R2Gn"     "PIK3R1.R2Gn"   
## [17] "MYH9.R2Gn"      "NDRG1.R2Gn"     "ERRFI1.R2Gn"    "PARP1.R2Gn"    
## [21] "IDH3A.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1254"   "hsa-mir-133b"  
## [25] "hsa-mir-182"    "hsa-mir-183"    "hsa-mir-187"    "hsa-mir-190b"  
## [29] "hsa-mir-192"    "hsa-mir-194-1"  "hsa-mir-194-2"  "hsa-mir-196b"  
## [33] "hsa-mir-205"    "hsa-mir-216b"   "hsa-mir-3130-1" "hsa-mir-3170"  
## [37] "hsa-mir-3191"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-3620"  
## [41] "hsa-mir-376a-1" "hsa-mir-383"    "hsa-mir-411"    "hsa-mir-433"   
## [45] "hsa-mir-499"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [49] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [53] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514b"   "hsa-mir-516a-1"
## [57] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [61] "hsa-mir-518f"   "hsa-mir-577"    "hsa-mir-585"    "hsa-mir-655"   
## [65] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-767"    "hsa-mir-887"   
## [69] "hsa-mir-9-3"    "hsa-mir-939"    "hsa-mir-96"    
## [1] "bicluster14"
##  [1] "G6PD.RPPA"      "ERBB3.R2Gn"     "CTNNB1.R2Gn"    "TGM2.R2Gn"     
##  [5] "CCND1.R2Gn"     "PRDX1.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1185-2"
##  [9] "hsa-mir-1197"   "hsa-mir-1251"   "hsa-mir-1269"   "hsa-mir-127"   
## [13] "hsa-mir-1270-2" "hsa-mir-134"    "hsa-mir-135a-1" "hsa-mir-136"   
## [17] "hsa-mir-138-1"  "hsa-mir-138-2"  "hsa-mir-154"    "hsa-mir-187"   
## [21] "hsa-mir-206"    "hsa-mir-299"    "hsa-mir-3166"   "hsa-mir-3199-1"
## [25] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [29] "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1"
## [33] "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"   
## [37] "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"   
## [41] "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-431"   
## [45] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"  
## [49] "hsa-mir-487b"   "hsa-mir-488"    "hsa-mir-493"    "hsa-mir-494"   
## [53] "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-499"    "hsa-mir-516a-1"
## [57] "hsa-mir-517a"   "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-539"   
## [61] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster5"
##  [1] "ATM.RPPA"       "EGFR.RPPA"      "FASN.RPPA"      "TTF1.RPPA"     
##  [5] "GAPDH.RPPA"     "CDH2.R2Gn"      "ADAR.R2Gn"      "CTNNB1.R2Gn"   
##  [9] "MAPT.R2Gn"      "TGM2.R2Gn"      "GAPDH.R2Gn"     "HSPA1A.R2Gn"   
## [13] "SYP.R2Gn"       "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"  
## [17] "hsa-mir-1197"   "hsa-mir-1269"   "hsa-mir-127"    "hsa-mir-1291"  
## [21] "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-200a"  
## [25] "hsa-mir-200b"   "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"  
## [29] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-369"    "hsa-mir-370"   
## [33] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"  
## [37] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"   
## [41] "hsa-mir-382"    "hsa-mir-3909"   "hsa-mir-409"    "hsa-mir-410"   
## [45] "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [49] "hsa-mir-433"    "hsa-mir-452"    "hsa-mir-466"    "hsa-mir-485"   
## [53] "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-494"    "hsa-mir-495"   
## [57] "hsa-mir-496"    "hsa-mir-499"    "hsa-mir-539"    "hsa-mir-541"   
## [61] "hsa-mir-543"    "hsa-mir-548q"   "hsa-mir-548v"   "hsa-mir-580"   
## [65] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster6"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "ATM.RPPA"       "FASN.RPPA"     
##  [5] "INPP4B.RPPA"    "ACVRL1.RPPA"    "PRDX1.RPPA"     "MSH6.RPPA"     
##  [9] "TFRC.RPPA"      "PREX1.RPPA"     "CDH2.R2Gn"      "ADAR.R2Gn"     
## [13] "FASN.R2Gn"      "EEF2.R2Gn"      "RPS6.R2Gn"      "PRKCA.R2Gn"    
## [17] "STMN1.R2Gn"     "STAT3.R2Gn"     "CDK1.R2Gn"      "CTNNA1.R2Gn"   
## [21] "PIK3R1.R2Gn"    "TYMS.R2Gn"      "CCNB1.R2Gn"     "YWHAB.R2Gn"    
## [25] "HSPA1A.R2Gn"    "PXN.R2Gn"       "ERRFI1.R2Gn"    "PREX1.R2Gn"    
## [29] "RET.R2Gn"       "hsa-mir-105-2"  "hsa-mir-1193"   "hsa-mir-124-1" 
## [33] "hsa-mir-124-3"  "hsa-mir-1249"   "hsa-mir-1255a"  "hsa-mir-1258"  
## [37] "hsa-mir-1292"   "hsa-mir-135a-1" "hsa-mir-135b"   "hsa-mir-137"   
## [41] "hsa-mir-138-1"  "hsa-mir-153-2"  "hsa-mir-216a"   "hsa-mir-26a-1" 
## [45] "hsa-mir-29b-1"  "hsa-mir-29b-2"  "hsa-mir-29c"    "hsa-mir-3166"  
## [49] "hsa-mir-3191"   "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-329-2" 
## [53] "hsa-mir-3652"   "hsa-mir-3912"   "hsa-mir-3922"   "hsa-mir-3923"  
## [57] "hsa-mir-3926-2" "hsa-mir-3934"   "hsa-mir-466"    "hsa-mir-510"   
## [61] "hsa-mir-511-1"  "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-544"   
## [65] "hsa-mir-548j"   "hsa-mir-585"    "hsa-mir-592"    "hsa-mir-605"   
## [69] "hsa-mir-653"    "hsa-mir-760"    "hsa-mir-767"   
## [1] "bicluster4"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "GATA3.RPPA"     "PDCD4.RPPA"    
##  [5] "GAPDH.RPPA"     "MYH11.RPPA"     "ERCC1.RPPA"     "PREX1.RPPA"    
##  [9] "G6PD.R2Gn"      "IGFBP2.R2Gn"    "EEF2.R2Gn"      "SERPINE1.R2Gn" 
## [13] "PCNA.R2Gn"      "RPS6.R2Gn"      "PIK3R1.R2Gn"    "GAPDH.R2Gn"    
## [17] "GAB2.R2Gn"      "PXN.R2Gn"       "SYP.R2Gn"       "hsa-let-7c"    
## [21] "hsa-mir-105-1"  "hsa-mir-105-2"  "hsa-mir-1185-1" "hsa-mir-1185-2"
## [25] "hsa-mir-1224"   "hsa-mir-1249"   "hsa-mir-125b-1" "hsa-mir-125b-2"
## [29] "hsa-mir-1270-2" "hsa-mir-182"    "hsa-mir-183"    "hsa-mir-204"   
## [33] "hsa-mir-216b"   "hsa-mir-217"    "hsa-mir-218-1"  "hsa-mir-326"   
## [37] "hsa-mir-329-2"  "hsa-mir-346"    "hsa-mir-34b"    "hsa-mir-3682"  
## [41] "hsa-mir-380"    "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-3940"  
## [45] "hsa-mir-433"    "hsa-mir-455"    "hsa-mir-466"    "hsa-mir-487a"  
## [49] "hsa-mir-488"    "hsa-mir-489"    "hsa-mir-494"    "hsa-mir-508"   
## [53] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-518f"  
## [57] "hsa-mir-548q"   "hsa-mir-561"    "hsa-mir-570"    "hsa-mir-585"   
## [61] "hsa-mir-627"    "hsa-mir-642a"   "hsa-mir-655"    "hsa-mir-670"   
## [65] "hsa-mir-767"    "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-891a"  
## [69] "hsa-mir-939"    "hsa-mir-96"     "hsa-mir-99a"
f20_10 = top_x_percent(fabia_20, perct = 10)
## [1] "bicluster10"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "PTEN.RPPA"      "ATM.RPPA"      
##  [5] "FASN.RPPA"      "TSC1.RPPA"      "TTF1.RPPA"      "VHL.RPPA"      
##  [9] "PRDX1.RPPA"     "GAPDH.RPPA"     "MSH6.RPPA"      "TFRC.RPPA"     
## [13] "PREX1.RPPA"     "FN1.R2Gn"       "XRCC5.R2Gn"     "CTNNB1.R2Gn"   
## [17] "YBX1.R2Gn"      "PRKCA.R2Gn"     "STMN1.R2Gn"     "PIK3R1.R2Gn"   
## [21] "GAPDH.R2Gn"     "ANXA1.R2Gn"     "HSPA1A.R2Gn"    "PXN.R2Gn"      
## [25] "hsa-mir-105-1"  "hsa-mir-105-2"  "hsa-mir-1185-1" "hsa-mir-1224"  
## [29] "hsa-mir-1258"   "hsa-mir-135b"   "hsa-mir-199a-1" "hsa-mir-199a-2"
## [33] "hsa-mir-199b"   "hsa-mir-2114"   "hsa-mir-214"    "hsa-mir-3166"  
## [37] "hsa-mir-320c-2" "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-376a-1"
## [41] "hsa-mir-3909"   "hsa-mir-3922"   "hsa-mir-3923"   "hsa-mir-3926-2"
## [45] "hsa-mir-3940"   "hsa-mir-466"    "hsa-mir-490"    "hsa-mir-493"   
## [49] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [53] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [57] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [61] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-585"   
## [65] "hsa-mir-605"    "hsa-mir-653"    "hsa-mir-656"    "hsa-mir-665"   
## [69] "hsa-mir-767"    "hsa-mir-770"    "hsa-mir-876"   
## [1] "bicluster9"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "INPP4B.RPPA"    "TTF1.RPPA"     
##  [5] "VHL.RPPA"       "PRDX1.RPPA"     "G6PD.R2Gn"      "TGM2.R2Gn"     
##  [9] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
## [13] "hsa-mir-1269"   "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"   
## [17] "hsa-mir-154"    "hsa-mir-206"    "hsa-mir-216b"   "hsa-mir-299"   
## [21] "hsa-mir-3199-1" "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [25] "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"   
## [29] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"  
## [33] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"   
## [37] "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"   
## [41] "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"   
## [45] "hsa-mir-452"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"  
## [49] "hsa-mir-489"    "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"   
## [53] "hsa-mir-496"    "hsa-mir-516a-1" "hsa-mir-516b-1" "hsa-mir-517a"  
## [57] "hsa-mir-518b"   "hsa-mir-520a"   "hsa-mir-539"    "hsa-mir-541"   
## [61] "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-654"    "hsa-mir-655"   
## [65] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-758"   
## [69] "hsa-mir-770"    "hsa-mir-876"    "hsa-mir-889"   
## [1] "bicluster19"
##  [1] "G6PD.RPPA"      "INPP4B.RPPA"    "FN1.R2Gn"       "ADAR.R2Gn"     
##  [5] "CTNNB1.R2Gn"    "TGM2.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2"
##  [9] "hsa-mir-1197"   "hsa-mir-127"    "hsa-mir-133b"   "hsa-mir-134"   
## [13] "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-205"    "hsa-mir-206"   
## [17] "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [21] "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"   
## [25] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"  
## [29] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"   
## [33] "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"   
## [37] "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"   
## [41] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-489"   
## [45] "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"   
## [49] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"  
## [53] "hsa-mir-518b"   "hsa-mir-518c"   "hsa-mir-518f"   "hsa-mir-519a-2"
## [57] "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-539"   
## [61] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster1"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "INPP4B.RPPA"    "TTF1.RPPA"     
##  [5] "G6PD.R2Gn"      "CDH2.R2Gn"      "CTNNB1.R2Gn"    "TGM2.R2Gn"     
##  [9] "SQSTM1.R2Gn"    "hsa-mir-106a"   "hsa-mir-1185-1" "hsa-mir-1185-2"
## [13] "hsa-mir-1193"   "hsa-mir-1197"   "hsa-mir-124-1"  "hsa-mir-124-3" 
## [17] "hsa-mir-127"    "hsa-mir-1270-2" "hsa-mir-134"    "hsa-mir-135a-1"
## [21] "hsa-mir-136"    "hsa-mir-137"    "hsa-mir-138-1"  "hsa-mir-154"   
## [25] "hsa-mir-299"    "hsa-mir-3193"   "hsa-mir-3199-1" "hsa-mir-323"   
## [29] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"   
## [33] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [37] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [41] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"   
## [45] "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"   
## [49] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"  
## [53] "hsa-mir-487b"   "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"   
## [57] "hsa-mir-496"    "hsa-mir-517a"   "hsa-mir-539"    "hsa-mir-541"   
## [61] "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-580"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster2"
##  [1] "FASN.RPPA"      "TTF1.RPPA"      "TGM2.R2Gn"      "PIK3R1.R2Gn"   
##  [5] "BCL2L1.R2Gn"    "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2"
##  [9] "hsa-mir-1197"   "hsa-mir-124-1"  "hsa-mir-124-3"  "hsa-mir-127"   
## [13] "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-206"   
## [17] "hsa-mir-299"    "hsa-mir-3173"   "hsa-mir-3193"   "hsa-mir-323"   
## [21] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"   
## [25] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [29] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [33] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"   
## [37] "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"   
## [41] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"  
## [45] "hsa-mir-487b"   "hsa-mir-489"    "hsa-mir-494"    "hsa-mir-495"   
## [49] "hsa-mir-496"    "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a"  
## [53] "hsa-mir-518b"   "hsa-mir-518c"   "hsa-mir-520a"   "hsa-mir-526b"  
## [57] "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-580"   
## [61] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-663"   
## [65] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-670"    "hsa-mir-758"   
## [69] "hsa-mir-770"    "hsa-mir-873"    "hsa-mir-889"   
## [1] "bicluster16"
##  [1] "GATA3.RPPA"     "FASN.RPPA"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
##  [5] "PRDX1.R2Gn"     "HSPA1A.R2Gn"    "ERRFI1.R2Gn"    "hsa-mir-1185-1"
##  [9] "hsa-mir-1185-2" "hsa-mir-1193"   "hsa-mir-1197"   "hsa-mir-1245"  
## [13] "hsa-mir-127"    "hsa-mir-1270-1" "hsa-mir-136"    "hsa-mir-154"   
## [17] "hsa-mir-200b"   "hsa-mir-2114"   "hsa-mir-323"    "hsa-mir-323b"  
## [21] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-369"    "hsa-mir-370"   
## [25] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"  
## [29] "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-382"    "hsa-mir-3909"  
## [33] "hsa-mir-3922"   "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-412"   
## [37] "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-466"   
## [41] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-488"   
## [45] "hsa-mir-493"    "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-506"   
## [49] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [53] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [57] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [61] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-539"    "hsa-mir-541"   
## [65] "hsa-mir-585"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [69] "hsa-mir-668"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster17"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "PTEN.RPPA"      "GATA3.RPPA"    
##  [5] "PEA15.RPPA"     "FASN.RPPA"      "TSC1.RPPA"      "PDCD4.RPPA"    
##  [9] "VHL.RPPA"       "PREX1.RPPA"     "AKT1S1.R2Gn"    "FN1.R2Gn"      
## [13] "AKT2.R2Gn"      "CDH2.R2Gn"      "PTEN.R2Gn"      "GATA3.R2Gn"    
## [17] "PEA15.R2Gn"     "ADAR.R2Gn"      "SERPINE1.R2Gn"  "CTNNB1.R2Gn"   
## [21] "SHC1.R2Gn"      "CTNNA1.R2Gn"    "CCND1.R2Gn"     "PIK3R1.R2Gn"   
## [25] "PXN.R2Gn"       "RPTOR.R2Gn"     "hsa-mir-124-3"  "hsa-mir-1249"  
## [29] "hsa-mir-1258"   "hsa-mir-1291"   "hsa-mir-135b"   "hsa-mir-139"   
## [33] "hsa-mir-182"    "hsa-mir-183"    "hsa-mir-196b"   "hsa-mir-2114"  
## [37] "hsa-mir-216b"   "hsa-mir-218-1"  "hsa-mir-3166"   "hsa-mir-3199-1"
## [41] "hsa-mir-320c-2" "hsa-mir-329-2"  "hsa-mir-3655"   "hsa-mir-3909"  
## [45] "hsa-mir-3923"   "hsa-mir-3926-2" "hsa-mir-466"    "hsa-mir-506"   
## [49] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [53] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [57] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [61] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-548b"   "hsa-mir-552"   
## [65] "hsa-mir-605"    "hsa-mir-665"    "hsa-mir-760"    "hsa-mir-767"   
## [69] "hsa-mir-770"    "hsa-mir-876"    "hsa-mir-887"   
## [1] "bicluster15"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "FASN.RPPA"      "TSC1.RPPA"     
##  [5] "TTF1.RPPA"      "VHL.RPPA"       "PRDX1.RPPA"     "MET.R2Gn"      
##  [9] "TGM2.R2Gn"      "PIK3R1.R2Gn"    "ANXA1.R2Gn"     "PXN.R2Gn"      
## [13] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
## [17] "hsa-mir-1258"   "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"   
## [21] "hsa-mir-154"    "hsa-mir-196a-2" "hsa-mir-2114"   "hsa-mir-218-1" 
## [25] "hsa-mir-3173"   "hsa-mir-323"    "hsa-mir-329-1"  "hsa-mir-329-2" 
## [29] "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1"
## [33] "hsa-mir-376a-2" "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-382"   
## [37] "hsa-mir-3940"   "hsa-mir-432"    "hsa-mir-466"    "hsa-mir-487a"  
## [41] "hsa-mir-487b"   "hsa-mir-489"    "hsa-mir-494"    "hsa-mir-496"   
## [45] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [49] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [53] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [57] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-541"   
## [61] "hsa-mir-605"    "hsa-mir-615"    "hsa-mir-653"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-770"    "hsa-mir-873"    "hsa-mir-876"   
## [1] "bicluster13"
##  [1] "FASN.RPPA"      "FN1.R2Gn"       "TGM2.R2Gn"      "COL6A1.R2Gn"   
##  [5] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"  
##  [9] "hsa-mir-1197"   "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"   
## [13] "hsa-mir-154"    "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"  
## [17] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-369"    "hsa-mir-370"   
## [21] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"  
## [25] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"   
## [29] "hsa-mir-382"    "hsa-mir-3922"   "hsa-mir-409"    "hsa-mir-410"   
## [33] "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [37] "hsa-mir-433"    "hsa-mir-466"    "hsa-mir-485"    "hsa-mir-487a"  
## [41] "hsa-mir-487b"   "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-506"   
## [45] "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3" 
## [49] "hsa-mir-510"    "hsa-mir-511-1"  "hsa-mir-511-2"  "hsa-mir-513a-1"
## [53] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [57] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-518b"   "hsa-mir-539"   
## [61] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-605"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster7"
##  [1] "GATA3.RPPA"     "EGFR.RPPA"      "TSC1.RPPA"      "TFRC.RPPA"     
##  [5] "FN1.R2Gn"       "CDH2.R2Gn"      "CTNNB1.R2Gn"    "CCND1.R2Gn"    
##  [9] "RPTOR.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
## [13] "hsa-mir-124-1"  "hsa-mir-124-3"  "hsa-mir-1269"   "hsa-mir-127"   
## [17] "hsa-mir-135b"   "hsa-mir-139"    "hsa-mir-154"    "hsa-mir-206"   
## [21] "hsa-mir-2114"   "hsa-mir-296"    "hsa-mir-3166"   "hsa-mir-3199-1"
## [25] "hsa-mir-320c-2" "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [29] "hsa-mir-3655"   "hsa-mir-3690"   "hsa-mir-370"    "hsa-mir-376a-2"
## [33] "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-382"    "hsa-mir-3923"  
## [37] "hsa-mir-3926-2" "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-433"   
## [41] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-506"   
## [45] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [49] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [53] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [57] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-517a"   "hsa-mir-518b"  
## [61] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-548j"   "hsa-mir-548q"  
## [65] "hsa-mir-577"    "hsa-mir-580"    "hsa-mir-582"    "hsa-mir-655"   
## [69] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-887"   
## [1] "bicluster20"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "VHL.RPPA"       "GAPDH.RPPA"    
##  [5] "MSH6.RPPA"      "ERBB3.R2Gn"     "FN1.R2Gn"       "GATA3.R2Gn"    
##  [9] "EIF4G1.R2Gn"    "STMN1.R2Gn"     "CDK1.R2Gn"      "E2F1.R2Gn"     
## [13] "MYC.R2Gn"       "CCND1.R2Gn"     "GAPDH.R2Gn"     "TYMS.R2Gn"     
## [17] "CCNB1.R2Gn"     "TUBA1B.R2Gn"    "FOXM1.R2Gn"     "YWHAB.R2Gn"    
## [21] "EZH2.R2Gn"      "ERRFI1.R2Gn"    "CDKN2A.R2Gn"    "hsa-mir-1185-1"
## [25] "hsa-mir-1185-2" "hsa-mir-1247"   "hsa-mir-1248"   "hsa-mir-1296"  
## [29] "hsa-mir-135b"   "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-187"   
## [33] "hsa-mir-218-2"  "hsa-mir-296"    "hsa-mir-29c"    "hsa-mir-3144"  
## [37] "hsa-mir-3170"   "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-372"   
## [41] "hsa-mir-377"    "hsa-mir-3923"   "hsa-mir-3926-1" "hsa-mir-3926-2"
## [45] "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-485"    "hsa-mir-487a"  
## [49] "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-506"    "hsa-mir-507"   
## [53] "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3" 
## [57] "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"  
## [61] "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [65] "hsa-mir-514b"   "hsa-mir-543"    "hsa-mir-548q"   "hsa-mir-655"   
## [69] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-887"   
## [1] "bicluster12"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "GATA3.RPPA"     "FASN.RPPA"     
##  [5] "MSH6.RPPA"      "TFRC.RPPA"      "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [9] "CDKN1A.R2Gn"    "GATA3.R2Gn"     "EEF2.R2Gn"      "CTNNB1.R2Gn"   
## [13] "STMN1.R2Gn"     "CDK1.R2Gn"      "CCND1.R2Gn"     "FOXM1.R2Gn"    
## [17] "HSPA1A.R2Gn"    "SNAI2.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1185-2"
## [21] "hsa-mir-124-3"  "hsa-mir-1258"   "hsa-mir-1269"   "hsa-mir-133b"  
## [25] "hsa-mir-135b"   "hsa-mir-183"    "hsa-mir-206"    "hsa-mir-2114"  
## [29] "hsa-mir-29c"    "hsa-mir-31"     "hsa-mir-3144"   "hsa-mir-3166"  
## [33] "hsa-mir-3191"   "hsa-mir-3193"   "hsa-mir-3199-1" "hsa-mir-320c-2"
## [37] "hsa-mir-3655"   "hsa-mir-3662"   "hsa-mir-3690"   "hsa-mir-3909"  
## [41] "hsa-mir-3923"   "hsa-mir-3926-2" "hsa-mir-3934"   "hsa-mir-411"   
## [45] "hsa-mir-429"    "hsa-mir-466"    "hsa-mir-485"    "hsa-mir-487a"  
## [49] "hsa-mir-494"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [53] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [57] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [61] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [65] "hsa-mir-548q"   "hsa-mir-580"    "hsa-mir-605"    "hsa-mir-655"   
## [69] "hsa-mir-656"    "hsa-mir-675"    "hsa-mir-935"   
## [1] "bicluster11"
##  [1] "G6PD.RPPA"      "GATA3.RPPA"     "EGFR.RPPA"      "INPP4B.RPPA"   
##  [5] "PDCD4.RPPA"     "G6PD.R2Gn"      "ERBB3.R2Gn"     "CDH2.R2Gn"     
##  [9] "GATA3.R2Gn"     "CTNNB1.R2Gn"    "CCND1.R2Gn"     "PIK3R1.R2Gn"   
## [13] "RPTOR.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-124-3" 
## [17] "hsa-mir-1258"   "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-1270-2"
## [21] "hsa-mir-135b"   "hsa-mir-138-1"  "hsa-mir-154"    "hsa-mir-183"   
## [25] "hsa-mir-187"    "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-3166"  
## [29] "hsa-mir-3187"   "hsa-mir-3199-1" "hsa-mir-323b"   "hsa-mir-329-1" 
## [33] "hsa-mir-3655"   "hsa-mir-376a-2" "hsa-mir-377"    "hsa-mir-380"   
## [37] "hsa-mir-3926-2" "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-485"   
## [41] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-506"    "hsa-mir-507"   
## [45] "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3" 
## [49] "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"  
## [53] "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [57] "hsa-mir-514b"   "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a"  
## [61] "hsa-mir-518b"   "hsa-mir-518c"   "hsa-mir-519a-2" "hsa-mir-520a"  
## [65] "hsa-mir-525"    "hsa-mir-543"    "hsa-mir-580"    "hsa-mir-655"   
## [69] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-887"   
## [1] "bicluster14"
##  [1] "G6PD.RPPA"      "ATM.RPPA"       "PDCD4.RPPA"     "GAPDH.RPPA"    
##  [5] "G6PD.R2Gn"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [9] "ACVRL1.R2Gn"    "CTNNB1.R2Gn"    "ANLN.R2Gn"      "FOXO3.R2Gn"    
## [13] "RAB11A.R2Gn"    "CDK1.R2Gn"      "PRDX1.R2Gn"     "GAPDH.R2Gn"    
## [17] "CCNB1.R2Gn"     "COL6A1.R2Gn"    "hsa-mir-105-1"  "hsa-mir-105-2" 
## [21] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1269"   "hsa-mir-1270-1"
## [25] "hsa-mir-1270-2" "hsa-mir-1293"   "hsa-mir-1305"   "hsa-mir-135a-1"
## [29] "hsa-mir-138-1"  "hsa-mir-199a-1" "hsa-mir-199a-2" "hsa-mir-199b"  
## [33] "hsa-mir-200a"   "hsa-mir-200b"   "hsa-mir-214"    "hsa-mir-216b"  
## [37] "hsa-mir-221"    "hsa-mir-222"    "hsa-mir-2277"   "hsa-mir-3130-1"
## [41] "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-329-1"  "hsa-mir-329-2" 
## [45] "hsa-mir-337"    "hsa-mir-3677"   "hsa-mir-3690"   "hsa-mir-377"   
## [49] "hsa-mir-3926-1" "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-485"   
## [53] "hsa-mir-487a"   "hsa-mir-488"    "hsa-mir-494"    "hsa-mir-499"   
## [57] "hsa-mir-511-2"  "hsa-mir-517a"   "hsa-mir-543"    "hsa-mir-548b"  
## [61] "hsa-mir-548q"   "hsa-mir-552"    "hsa-mir-577"    "hsa-mir-655"   
## [65] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-767"    "hsa-mir-873"   
## [69] "hsa-mir-876"    "hsa-mir-887"    "hsa-mir-940"   
## [1] "bicluster18"
##  [1] "RBM15.RPPA"     "GATA3.RPPA"     "FASN.RPPA"      "VHL.RPPA"      
##  [5] "GAPDH.RPPA"     "CDKN1B.R2Gn"    "ERBB3.R2Gn"     "AKT1S1.R2Gn"   
##  [9] "BECN1.R2Gn"     "GATA3.R2Gn"     "EIF4G1.R2Gn"    "ADAR.R2Gn"     
## [13] "EEF2.R2Gn"      "RPS6.R2Gn"      "CDH3.R2Gn"      "TGM2.R2Gn"     
## [17] "MS4A1.R2Gn"     "XRCC1.R2Gn"     "CCND1.R2Gn"     "XBP1.R2Gn"     
## [21] "GAPDH.R2Gn"     "MYH9.R2Gn"      "RAB25.R2Gn"     "ERCC1.R2Gn"    
## [25] "BID.R2Gn"       "TFRC.R2Gn"      "HSPA1A.R2Gn"    "PXN.R2Gn"      
## [29] "ERRFI1.R2Gn"    "PARP1.R2Gn"     "NAPSA.R2Gn"     "TFF1.R2Gn"     
## [33] "CDKN2A.R2Gn"    "KCNJ13.R2Gn"    "hsa-mir-124-3"  "hsa-mir-1249"  
## [37] "hsa-mir-1258"   "hsa-mir-1262"   "hsa-mir-187"    "hsa-mir-196b"  
## [41] "hsa-mir-206"    "hsa-mir-216b"   "hsa-mir-296"    "hsa-mir-3130-1"
## [45] "hsa-mir-3170"   "hsa-mir-383"    "hsa-mir-3926-2" "hsa-mir-506"   
## [49] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [53] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-511-2"  "hsa-mir-513a-1"
## [57] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [61] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-516b-1"
## [65] "hsa-mir-518b"   "hsa-mir-548q"   "hsa-mir-643"    "hsa-mir-760"   
## [69] "hsa-mir-887"    "hsa-mir-9-3"    "hsa-mir-935"   
## [1] "bicluster5"
##  [1] "ATM.RPPA"       "EGFR.RPPA"      "GAPDH.RPPA"     "ERBB3.R2Gn"    
##  [5] "CDH2.R2Gn"      "PEA15.R2Gn"     "ADAR.R2Gn"      "CTNNB1.R2Gn"   
##  [9] "SHC1.R2Gn"      "TGM2.R2Gn"      "GAPDH.R2Gn"     "ERRFI1.R2Gn"   
## [13] "SYP.R2Gn"       "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"  
## [17] "hsa-mir-1197"   "hsa-mir-1269"   "hsa-mir-127"    "hsa-mir-1293"  
## [21] "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-199a-1"
## [25] "hsa-mir-199a-2" "hsa-mir-200a"   "hsa-mir-200b"   "hsa-mir-214"   
## [29] "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [33] "hsa-mir-329-2"  "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1"
## [37] "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"   
## [41] "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"   
## [45] "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-429"   
## [49] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-452"    "hsa-mir-485"   
## [53] "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-494"    "hsa-mir-495"   
## [57] "hsa-mir-496"    "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-518b"  
## [61] "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-548v"  
## [65] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster6"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "ATM.RPPA"       "FASN.RPPA"     
##  [5] "INPP4B.RPPA"    "VHL.RPPA"       "PRDX1.RPPA"     "XBP1.RPPA"     
##  [9] "MSH6.RPPA"      "TFRC.RPPA"      "PREX1.RPPA"     "G6PD.R2Gn"     
## [13] "FN1.R2Gn"       "CDH2.R2Gn"      "EIF4G1.R2Gn"    "EEF2.R2Gn"     
## [17] "SERPINE1.R2Gn"  "PRKCA.R2Gn"     "CTNNA1.R2Gn"    "PIK3R1.R2Gn"   
## [21] "NDRG1.R2Gn"     "YWHAB.R2Gn"     "HSPA1A.R2Gn"    "PXN.R2Gn"      
## [25] "SNAI2.R2Gn"     "PREX1.R2Gn"     "RET.R2Gn"       "SQSTM1.R2Gn"   
## [29] "hsa-mir-1248"   "hsa-mir-1258"   "hsa-mir-135b"   "hsa-mir-137"   
## [33] "hsa-mir-138-1"  "hsa-mir-196b"   "hsa-mir-199a-1" "hsa-mir-199a-2"
## [37] "hsa-mir-199b"   "hsa-mir-214"    "hsa-mir-218-1"  "hsa-mir-3166"  
## [41] "hsa-mir-3170"   "hsa-mir-320c-2" "hsa-mir-335"    "hsa-mir-3912"  
## [45] "hsa-mir-3923"   "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-3934"  
## [49] "hsa-mir-3940"   "hsa-mir-466"    "hsa-mir-483"    "hsa-mir-506"   
## [53] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [57] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [61] "hsa-mir-513b"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [65] "hsa-mir-552"    "hsa-mir-605"    "hsa-mir-615"    "hsa-mir-765"   
## [69] "hsa-mir-767"    "hsa-mir-873"    "hsa-mir-876"   
## [1] "bicluster3"
##  [1] "IGFBP2.RPPA"    "PEA15.RPPA"     "PDCD4.RPPA"     "ERBB3.R2Gn"    
##  [5] "IGFBP2.R2Gn"    "FN1.R2Gn"       "CDH2.R2Gn"      "PEA15.R2Gn"    
##  [9] "ITGA2.R2Gn"     "ADAR.R2Gn"      "SERPINE1.R2Gn"  "SHC1.R2Gn"     
## [13] "TGM2.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
## [17] "hsa-mir-127"    "hsa-mir-133b"   "hsa-mir-154"    "hsa-mir-205"   
## [21] "hsa-mir-206"    "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [25] "hsa-mir-329-2"  "hsa-mir-3620"   "hsa-mir-3678"   "hsa-mir-370"   
## [29] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"  
## [33] "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"   
## [37] "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-431"   
## [41] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"  
## [45] "hsa-mir-487b"   "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-516a-1"
## [49] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [53] "hsa-mir-518c"   "hsa-mir-518f"   "hsa-mir-519a-1" "hsa-mir-519a-2"
## [57] "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-539"   
## [61] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"   
## [65] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-7-2"    "hsa-mir-7-3"   
## [69] "hsa-mir-765"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster8"
##  [1] "IGFBP2.RPPA"    "ASNS.RPPA"      "PTEN.RPPA"      "PEA15.RPPA"    
##  [5] "MYH11.RPPA"     "ERCC1.RPPA"     "TFRC.RPPA"      "KDR.R2Gn"      
##  [9] "ERBB3.R2Gn"     "FN1.R2Gn"       "AKT2.R2Gn"      "CDH2.R2Gn"     
## [13] "EIF4G1.R2Gn"    "SERPINE1.R2Gn"  "PDCD4.R2Gn"     "TP63.R2Gn"     
## [17] "GAPDH.R2Gn"     "KRT5.R2Gn"      "YWHAB.R2Gn"     "ERRFI1.R2Gn"   
## [21] "CHGA.R2Gn"      "hsa-mir-100"    "hsa-mir-1185-1" "hsa-mir-1185-2"
## [25] "hsa-mir-1193"   "hsa-mir-1197"   "hsa-mir-122"    "hsa-mir-1245"  
## [29] "hsa-mir-1248"   "hsa-mir-1293"   "hsa-mir-135a-1" "hsa-mir-135b"  
## [33] "hsa-mir-141"    "hsa-mir-146b"   "hsa-mir-184"    "hsa-mir-194-2" 
## [37] "hsa-mir-199a-1" "hsa-mir-199a-2" "hsa-mir-199b"   "hsa-mir-206"   
## [41] "hsa-mir-2114"   "hsa-mir-214"    "hsa-mir-30c-1"  "hsa-mir-3170"  
## [45] "hsa-mir-3173"   "hsa-mir-320c-2" "hsa-mir-323"    "hsa-mir-323b"  
## [49] "hsa-mir-329-2"  "hsa-mir-3678"   "hsa-mir-376a-1" "hsa-mir-376b"  
## [53] "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-3926-1" "hsa-mir-466"   
## [57] "hsa-mir-487a"   "hsa-mir-496"    "hsa-mir-511-2"  "hsa-mir-541"   
## [61] "hsa-mir-548s"   "hsa-mir-552"    "hsa-mir-592"    "hsa-mir-627"   
## [65] "hsa-mir-656"    "hsa-mir-663"    "hsa-mir-668"    "hsa-mir-765"   
## [69] "hsa-mir-770"    "hsa-mir-891a"   "hsa-mir-9-3"   
## [1] "bicluster4"
##  [1] "G6PD.RPPA"      "PEA15.RPPA"     "MYH11.RPPA"     "TFRC.RPPA"     
##  [5] "PREX1.RPPA"     "G6PD.R2Gn"      "FN1.R2Gn"       "ADAR.R2Gn"     
##  [9] "EEF2.R2Gn"      "RPS6.R2Gn"      "PTK2.R2Gn"      "KEAP1.R2Gn"    
## [13] "CCND1.R2Gn"     "SNAI2.R2Gn"     "hsa-mir-105-1"  "hsa-mir-1185-1"
## [17] "hsa-mir-1185-2" "hsa-mir-1248"   "hsa-mir-1249"   "hsa-mir-1269"  
## [21] "hsa-mir-127"    "hsa-mir-1270-2" "hsa-mir-1274b"  "hsa-mir-134"   
## [25] "hsa-mir-135b"   "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-206"   
## [29] "hsa-mir-2114"   "hsa-mir-216b"   "hsa-mir-217"    "hsa-mir-218-1" 
## [33] "hsa-mir-218-2"  "hsa-mir-299"    "hsa-mir-31"     "hsa-mir-323"   
## [37] "hsa-mir-323b"   "hsa-mir-326"    "hsa-mir-329-1"  "hsa-mir-329-2" 
## [41] "hsa-mir-346"    "hsa-mir-34b"    "hsa-mir-3614"   "hsa-mir-3652"  
## [45] "hsa-mir-370"    "hsa-mir-376a-2" "hsa-mir-376c"   "hsa-mir-377"   
## [49] "hsa-mir-380"    "hsa-mir-382"    "hsa-mir-3923"   "hsa-mir-411"   
## [53] "hsa-mir-429"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"  
## [57] "hsa-mir-494"    "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-548j"  
## [61] "hsa-mir-585"    "hsa-mir-627"    "hsa-mir-642a"   "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-663"    "hsa-mir-668"   
## [69] "hsa-mir-670"    "hsa-mir-889"    "hsa-mir-891a"
f35_10 = top_x_percent(fabia_35, perct = 10)
## [1] "bicluster21"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "PTEN.RPPA"      "FASN.RPPA"     
##  [5] "VHL.RPPA"       "TFRC.RPPA"      "AKT1S1.R2Gn"    "IGFBP2.R2Gn"   
##  [9] "FN1.R2Gn"       "CDH2.R2Gn"      "GATA3.R2Gn"     "RPS6.R2Gn"     
## [13] "PXN.R2Gn"       "SYP.R2Gn"       "hsa-mir-1185-1" "hsa-mir-1193"  
## [17] "hsa-mir-124-1"  "hsa-mir-124-3"  "hsa-mir-1258"   "hsa-mir-135b"  
## [21] "hsa-mir-153-1"  "hsa-mir-153-2"  "hsa-mir-26a-1"  "hsa-mir-3166"  
## [25] "hsa-mir-3191"   "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-329-2" 
## [29] "hsa-mir-3682"   "hsa-mir-3690"   "hsa-mir-376a-2" "hsa-mir-383"   
## [33] "hsa-mir-3909"   "hsa-mir-3923"   "hsa-mir-3926-2" "hsa-mir-3934"  
## [37] "hsa-mir-412"    "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-466"   
## [41] "hsa-mir-493"    "hsa-mir-499"    "hsa-mir-506"    "hsa-mir-507"   
## [45] "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3" 
## [49] "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"  
## [53] "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [57] "hsa-mir-514b"   "hsa-mir-516a-1" "hsa-mir-544"    "hsa-mir-548s"  
## [61] "hsa-mir-548v"   "hsa-mir-550a-2" "hsa-mir-552"    "hsa-mir-580"   
## [65] "hsa-mir-581"    "hsa-mir-585"    "hsa-mir-592"    "hsa-mir-605"   
## [69] "hsa-mir-639"    "hsa-mir-767"    "hsa-mir-770"   
## [1] "bicluster19"
##  [1] "ASNS.RPPA"      "INPP4B.RPPA"    "MYH11.RPPA"     "ERBB3.R2Gn"    
##  [5] "FN1.R2Gn"       "CTNNB1.R2Gn"    "TGM2.R2Gn"      "hsa-mir-1185-1"
##  [9] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-1269"   "hsa-mir-127"   
## [13] "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-146a"   "hsa-mir-154"   
## [17] "hsa-mir-205"    "hsa-mir-206"    "hsa-mir-299"    "hsa-mir-323"   
## [21] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-369"   
## [25] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"  
## [29] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"   
## [33] "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-3926-1" "hsa-mir-3926-2"
## [37] "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-431"   
## [41] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"  
## [45] "hsa-mir-487b"   "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-516a-1"
## [49] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [53] "hsa-mir-518c"   "hsa-mir-518f"   "hsa-mir-519a-1" "hsa-mir-519a-2"
## [57] "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-539"   
## [61] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-654"   
## [65] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster16"
##  [1] "GATA3.RPPA"     "PDCD4.RPPA"     "PREX1.RPPA"     "ERBB3.R2Gn"    
##  [5] "IGFBP2.R2Gn"    "PRKCA.R2Gn"     "PRDX1.R2Gn"     "HSPA1A.R2Gn"   
##  [9] "ERRFI1.R2Gn"    "RBM3.R2Gn"      "RPTOR.R2Gn"     "hsa-mir-105-2" 
## [13] "hsa-mir-1185-1" "hsa-mir-1193"   "hsa-mir-1197"   "hsa-mir-1224"  
## [17] "hsa-mir-1228"   "hsa-mir-1245"   "hsa-mir-1248"   "hsa-mir-1270-1"
## [21] "hsa-mir-129-2"  "hsa-mir-1291"   "hsa-mir-135a-1" "hsa-mir-184"   
## [25] "hsa-mir-199a-1" "hsa-mir-199a-2" "hsa-mir-200b"   "hsa-mir-214"   
## [29] "hsa-mir-3170"   "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [33] "hsa-mir-329-2"  "hsa-mir-335"    "hsa-mir-3678"   "hsa-mir-376a-1"
## [37] "hsa-mir-380"    "hsa-mir-3909"   "hsa-mir-3922"   "hsa-mir-410"   
## [41] "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"   
## [45] "hsa-mir-455"    "hsa-mir-466"    "hsa-mir-487b"   "hsa-mir-488"   
## [49] "hsa-mir-493"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [53] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [57] "hsa-mir-513a-2" "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [61] "hsa-mir-541"    "hsa-mir-550a-2" "hsa-mir-585"    "hsa-mir-639"   
## [65] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-766"    "hsa-mir-873"   
## [69] "hsa-mir-876"    "hsa-mir-937"    "hsa-mir-95"    
## [1] "bicluster24"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "FASN.RPPA"      "TSC1.RPPA"     
##  [5] "TTF1.RPPA"      "CDK1.RPPA"      "VHL.RPPA"       "PRDX1.RPPA"    
##  [9] "XBP1.RPPA"      "GAPDH.RPPA"     "MSH6.RPPA"      "TFRC.RPPA"     
## [13] "PREX1.RPPA"     "G6PD.R2Gn"      "FASN.R2Gn"      "EEF2.R2Gn"     
## [17] "CTNNB1.R2Gn"    "PRKCA.R2Gn"     "TGM2.R2Gn"      "CTNNA1.R2Gn"   
## [21] "PIK3R1.R2Gn"    "PXN.R2Gn"       "PREX1.R2Gn"     "SQSTM1.R2Gn"   
## [25] "hsa-mir-1197"   "hsa-mir-1258"   "hsa-mir-127"    "hsa-mir-134"   
## [29] "hsa-mir-136"    "hsa-mir-137"    "hsa-mir-146a"   "hsa-mir-200a"  
## [33] "hsa-mir-26a-1"  "hsa-mir-3170"   "hsa-mir-329-2"  "hsa-mir-3607"  
## [37] "hsa-mir-3687"   "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-2"
## [41] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"   
## [45] "hsa-mir-3909"   "hsa-mir-3934"   "hsa-mir-3940"   "hsa-mir-466"   
## [49] "hsa-mir-487a"   "hsa-mir-489"    "hsa-mir-506"    "hsa-mir-507"   
## [53] "hsa-mir-508"    "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [57] "hsa-mir-513b"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [61] "hsa-mir-548q"   "hsa-mir-548v"   "hsa-mir-551b"   "hsa-mir-552"   
## [65] "hsa-mir-605"    "hsa-mir-607"    "hsa-mir-653"    "hsa-mir-656"   
## [69] "hsa-mir-665"    "hsa-mir-873"    "hsa-mir-876"   
## [1] "bicluster9"
##  [1] "G6PD.RPPA"      "GATA3.RPPA"     "FASN.RPPA"      "INPP4B.RPPA"   
##  [5] "TTF1.RPPA"      "VHL.RPPA"       "PRDX1.RPPA"     "MYH11.RPPA"    
##  [9] "G6PD.R2Gn"      "FN1.R2Gn"       "CTNNB1.R2Gn"    "TGM2.R2Gn"     
## [13] "HSPA1A.R2Gn"    "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2"
## [17] "hsa-mir-1197"   "hsa-mir-1228"   "hsa-mir-1247"   "hsa-mir-1269"  
## [21] "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"   
## [25] "hsa-mir-218-1"  "hsa-mir-299"    "hsa-mir-301b"   "hsa-mir-320c-2"
## [29] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [33] "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1"
## [37] "hsa-mir-376a-2" "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [41] "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"   
## [45] "hsa-mir-411"    "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"   
## [49] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-489"    "hsa-mir-494"   
## [53] "hsa-mir-496"    "hsa-mir-499"    "hsa-mir-516a-1" "hsa-mir-516b-1"
## [57] "hsa-mir-517a"   "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-543"   
## [61] "hsa-mir-577"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [65] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-7-2"    "hsa-mir-758"   
## [69] "hsa-mir-770"    "hsa-mir-876"    "hsa-mir-889"   
## [1] "bicluster2"
##  [1] "GATA3.RPPA"     "FASN.RPPA"      "INPP4B.RPPA"    "TTF1.RPPA"     
##  [5] "MSH6.RPPA"      "MYH11.RPPA"     "TFRC.RPPA"      "FASN.R2Gn"     
##  [9] "CTNNA1.R2Gn"    "PIK3R1.R2Gn"    "BCL2L1.R2Gn"    "TYMS.R2Gn"     
## [13] "TFRC.R2Gn"      "SQSTM1.R2Gn"    "hsa-let-7f-1"   "hsa-mir-1-2"   
## [17] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-124-1" 
## [21] "hsa-mir-124-2"  "hsa-mir-124-3"  "hsa-mir-1247"   "hsa-mir-127"   
## [25] "hsa-mir-134"    "hsa-mir-154"    "hsa-mir-299"    "hsa-mir-301b"  
## [29] "hsa-mir-3193"   "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [33] "hsa-mir-329-2"  "hsa-mir-3687"   "hsa-mir-369"    "hsa-mir-370"   
## [37] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"  
## [41] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-382"   
## [45] "hsa-mir-3912"   "hsa-mir-3922"   "hsa-mir-409"    "hsa-mir-411"   
## [49] "hsa-mir-431"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"   
## [53] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-541"    "hsa-mir-543"   
## [57] "hsa-mir-580"    "hsa-mir-585"    "hsa-mir-636"    "hsa-mir-654"   
## [61] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-670"   
## [65] "hsa-mir-758"    "hsa-mir-767"    "hsa-mir-770"    "hsa-mir-873"   
## [69] "hsa-mir-876"    "hsa-mir-889"    "hsa-mir-937"   
## [1] "bicluster13"
##  [1] "ASNS.RPPA"      "GATA3.RPPA"     "FASN.RPPA"      "GAPDH.RPPA"    
##  [5] "MSH6.RPPA"      "AKT1S1.R2Gn"    "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [9] "AKT2.R2Gn"      "AKT1.R2Gn"      "EEF2.R2Gn"      "ACVRL1.R2Gn"   
## [13] "RPS6.R2Gn"      "PDCD4.R2Gn"     "JUN.R2Gn"       "STAT3.R2Gn"    
## [17] "PARK7.R2Gn"     "TGM2.R2Gn"      "RAB11A.R2Gn"    "ACACB.R2Gn"    
## [21] "COL6A1.R2Gn"    "ANXA1.R2Gn"     "TFRC.R2Gn"      "HSPA1A.R2Gn"   
## [25] "SYP.R2Gn"       "hsa-mir-1193"   "hsa-mir-124-2"  "hsa-mir-124-3" 
## [29] "hsa-mir-1258"   "hsa-mir-125b-1" "hsa-mir-137"    "hsa-mir-146b"  
## [33] "hsa-mir-155"    "hsa-mir-184"    "hsa-mir-196a-2" "hsa-mir-202"   
## [37] "hsa-mir-206"    "hsa-mir-21"     "hsa-mir-221"    "hsa-mir-2355"  
## [41] "hsa-mir-31"     "hsa-mir-3682"   "hsa-mir-376a-2" "hsa-mir-380"   
## [45] "hsa-mir-3934"   "hsa-mir-412"    "hsa-mir-466"    "hsa-mir-490"   
## [49] "hsa-mir-510"    "hsa-mir-511-1"  "hsa-mir-513a-1" "hsa-mir-513b"  
## [53] "hsa-mir-513c"   "hsa-mir-516a-2" "hsa-mir-517a"   "hsa-mir-518b"  
## [57] "hsa-mir-518f"   "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-544"   
## [61] "hsa-mir-548v"   "hsa-mir-552"    "hsa-mir-582"    "hsa-mir-592"   
## [65] "hsa-mir-605"    "hsa-mir-607"    "hsa-mir-653"    "hsa-mir-656"   
## [69] "hsa-mir-708"    "hsa-mir-767"    "hsa-mir-891a"  
## [1] "bicluster29"
##  [1] "ASNS.RPPA"      "PEA15.RPPA"     "TFRC.RPPA"      "PREX1.RPPA"    
##  [5] "ERBB3.R2Gn"     "FN1.R2Gn"       "CDH2.R2Gn"      "PEA15.R2Gn"    
##  [9] "MAPK1.R2Gn"     "ITGA2.R2Gn"     "ADAR.R2Gn"      "FASN.R2Gn"     
## [13] "YWHAE.R2Gn"     "CTNNB1.R2Gn"    "PRKCA.R2Gn"     "PDCD4.R2Gn"    
## [17] "CCND1.R2Gn"     "PIK3R2.R2Gn"    "HSPA1A.R2Gn"    "ERRFI1.R2Gn"   
## [21] "PREX1.R2Gn"     "hsa-mir-100"    "hsa-mir-10a"    "hsa-mir-1185-1"
## [25] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-1248"   "hsa-mir-1258"  
## [29] "hsa-mir-1270-2" "hsa-mir-135a-1" "hsa-mir-139"    "hsa-mir-182"   
## [33] "hsa-mir-183"    "hsa-mir-196b"   "hsa-mir-206"    "hsa-mir-3166"  
## [37] "hsa-mir-3170"   "hsa-mir-3199-1" "hsa-mir-323"    "hsa-mir-323b"  
## [41] "hsa-mir-329-1"  "hsa-mir-335"    "hsa-mir-338"    "hsa-mir-3678"  
## [45] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"  
## [49] "hsa-mir-380"    "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"   
## [53] "hsa-mir-424"    "hsa-mir-431"    "hsa-mir-433"    "hsa-mir-485"   
## [57] "hsa-mir-487a"   "hsa-mir-488"    "hsa-mir-494"    "hsa-mir-496"   
## [61] "hsa-mir-517a"   "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-582"   
## [65] "hsa-mir-654"    "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-873"   
## [69] "hsa-mir-876"    "hsa-mir-940"    "hsa-mir-96"    
## [1] "bicluster10"
##  [1] "G6PD.RPPA"      "ATM.RPPA"       "FASN.RPPA"      "TSC1.RPPA"     
##  [5] "PRDX1.RPPA"     "GAPDH.RPPA"     "MSH6.RPPA"      "PDK1.RPPA"     
##  [9] "TFRC.RPPA"      "PREX1.RPPA"     "MAPK14.R2Gn"    "ERBB3.R2Gn"    
## [13] "IGFBP2.R2Gn"    "FN1.R2Gn"       "AKT2.R2Gn"      "CDH2.R2Gn"     
## [17] "RB1.R2Gn"       "MAPK9.R2Gn"     "XRCC5.R2Gn"     "ADAR.R2Gn"     
## [21] "FASN.R2Gn"      "CTNNB1.R2Gn"    "PIK3R1.R2Gn"    "GAPDH.R2Gn"    
## [25] "TUBA1B.R2Gn"    "XIAP.R2Gn"      "TFRC.R2Gn"      "PARP1.R2Gn"    
## [29] "hsa-mir-1224"   "hsa-mir-1269"   "hsa-mir-129-2"  "hsa-mir-135b"  
## [33] "hsa-mir-138-1"  "hsa-mir-139"    "hsa-mir-205"    "hsa-mir-2114"  
## [37] "hsa-mir-218-1"  "hsa-mir-29c"    "hsa-mir-320c-2" "hsa-mir-329-2" 
## [41] "hsa-mir-3655"   "hsa-mir-3922"   "hsa-mir-3923"   "hsa-mir-3926-2"
## [45] "hsa-mir-3940"   "hsa-mir-466"    "hsa-mir-490"    "hsa-mir-493"   
## [49] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [53] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [57] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [61] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-552"   
## [65] "hsa-mir-585"    "hsa-mir-605"    "hsa-mir-664"    "hsa-mir-665"   
## [69] "hsa-mir-675"    "hsa-mir-767"    "hsa-mir-876"   
## [1] "bicluster7"
##  [1] "G6PD.RPPA"      "GATA3.RPPA"     "ATM.RPPA"       "EGFR.RPPA"     
##  [5] "TSC1.RPPA"      "GAPDH.RPPA"     "MYH11.RPPA"     "TFRC.RPPA"     
##  [9] "KDR.R2Gn"       "ERBB3.R2Gn"     "FN1.R2Gn"       "CTNNB1.R2Gn"   
## [13] "TGM2.R2Gn"      "CCND1.R2Gn"     "GAPDH.R2Gn"     "MYH9.R2Gn"     
## [17] "COL6A1.R2Gn"    "SYP.R2Gn"       "PARP1.R2Gn"     "SNAI2.R2Gn"    
## [21] "CHGA.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1226"  
## [25] "hsa-mir-1269"   "hsa-mir-1293"   "hsa-mir-184"    "hsa-mir-2114"  
## [29] "hsa-mir-29c"    "hsa-mir-30c-1"  "hsa-mir-3130-1" "hsa-mir-3166"  
## [33] "hsa-mir-3191"   "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-3662"  
## [37] "hsa-mir-377"    "hsa-mir-3922"   "hsa-mir-3923"   "hsa-mir-411"   
## [41] "hsa-mir-429"    "hsa-mir-452"    "hsa-mir-485"    "hsa-mir-487a"  
## [45] "hsa-mir-494"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [49] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [53] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [57] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [61] "hsa-mir-518b"   "hsa-mir-543"    "hsa-mir-548j"   "hsa-mir-548v"  
## [65] "hsa-mir-551b"   "hsa-mir-577"    "hsa-mir-582"    "hsa-mir-655"   
## [69] "hsa-mir-656"    "hsa-mir-937"    "hsa-mir-939"   
## [1] "bicluster34"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "FASN.RPPA"      "PDCD4.RPPA"    
##  [5] "MSH6.RPPA"      "MSH2.RPPA"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
##  [9] "RPS6KA1.R2Gn"   "ADAR.R2Gn"      "EEF2.R2Gn"      "CTNNB1.R2Gn"   
## [13] "SHC1.R2Gn"      "CCND1.R2Gn"     "GAPDH.R2Gn"     "CASP9.R2Gn"    
## [17] "RPTOR.R2Gn"     "CHGA.R2Gn"      "SQSTM1.R2Gn"    "hsa-mir-1185-1"
## [21] "hsa-mir-1229"   "hsa-mir-124-1"  "hsa-mir-124-3"  "hsa-mir-1248"  
## [25] "hsa-mir-1251"   "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-1270-2"
## [29] "hsa-mir-1274b"  "hsa-mir-1301"   "hsa-mir-135b"   "hsa-mir-183"   
## [33] "hsa-mir-187"    "hsa-mir-200b"   "hsa-mir-218-1"  "hsa-mir-218-2" 
## [37] "hsa-mir-219-1"  "hsa-mir-2277"   "hsa-mir-296"    "hsa-mir-3065"  
## [41] "hsa-mir-3130-1" "hsa-mir-3144"   "hsa-mir-3166"   "hsa-mir-320c-2"
## [45] "hsa-mir-34b"    "hsa-mir-3648"   "hsa-mir-3676"   "hsa-mir-3682"  
## [49] "hsa-mir-3687"   "hsa-mir-3690"   "hsa-mir-411"    "hsa-mir-433"   
## [53] "hsa-mir-485"    "hsa-mir-488"    "hsa-mir-510"    "hsa-mir-511-2" 
## [57] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-514-1"  "hsa-mir-514-2" 
## [61] "hsa-mir-514-3"  "hsa-mir-516b-1" "hsa-mir-518b"   "hsa-mir-548q"  
## [65] "hsa-mir-552"    "hsa-mir-605"    "hsa-mir-607"    "hsa-mir-636"   
## [69] "hsa-mir-655"    "hsa-mir-887"    "hsa-mir-940"   
## [1] "bicluster31"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "ATM.RPPA"       "EGFR.RPPA"     
##  [5] "TSC1.RPPA"      "GAPDH.RPPA"     "MYH11.RPPA"     "TFRC.RPPA"     
##  [9] "ERBB3.R2Gn"     "CDKN1A.R2Gn"    "ITGA2.R2Gn"     "YWHAE.R2Gn"    
## [13] "YBX1.R2Gn"      "RPS6.R2Gn"      "PDCD4.R2Gn"     "PIK3R1.R2Gn"   
## [17] "PRDX1.R2Gn"     "GAPDH.R2Gn"     "HSPA1A.R2Gn"    "RET.R2Gn"      
## [21] "hsa-mir-105-2"  "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"  
## [25] "hsa-mir-1197"   "hsa-mir-1249"   "hsa-mir-127"    "hsa-mir-129-2" 
## [29] "hsa-mir-1293"   "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-200a"  
## [33] "hsa-mir-200b"   "hsa-mir-296"    "hsa-mir-299"    "hsa-mir-323"   
## [37] "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-33b"    "hsa-mir-3682"  
## [41] "hsa-mir-3687"   "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"  
## [45] "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-3922"   "hsa-mir-410"   
## [49] "hsa-mir-411"    "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"   
## [53] "hsa-mir-487a"   "hsa-mir-490"    "hsa-mir-494"    "hsa-mir-496"   
## [57] "hsa-mir-516a-1" "hsa-mir-525"    "hsa-mir-544"    "hsa-mir-550a-2"
## [61] "hsa-mir-552"    "hsa-mir-581"    "hsa-mir-585"    "hsa-mir-605"   
## [65] "hsa-mir-654"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [69] "hsa-mir-767"    "hsa-mir-770"    "hsa-mir-891a"  
## [1] "bicluster27"
##  [1] "GATA3.RPPA"     "INPP4B.RPPA"    "ACVRL1.RPPA"    "TTF1.RPPA"     
##  [5] "GAPDH.RPPA"     "ERBB3.R2Gn"     "FN1.R2Gn"       "CDH2.R2Gn"     
##  [9] "SERPINE1.R2Gn"  "CTNNB1.R2Gn"    "STMN1.R2Gn"     "TGM2.R2Gn"     
## [13] "CCND1.R2Gn"     "PRDX1.R2Gn"     "MYH9.R2Gn"      "PDK1.R2Gn"     
## [17] "NDRG1.R2Gn"     "HSPA1A.R2Gn"    "SYP.R2Gn"       "PARP1.R2Gn"    
## [21] "CHGA.R2Gn"      "IDH3A.R2Gn"     "hsa-mir-1245"   "hsa-mir-1255a" 
## [25] "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1292"   "hsa-mir-1296"  
## [29] "hsa-mir-133b"   "hsa-mir-135a-1" "hsa-mir-141"    "hsa-mir-184"   
## [33] "hsa-mir-205"    "hsa-mir-296"    "hsa-mir-29c"    "hsa-mir-3065"  
## [37] "hsa-mir-329-2"  "hsa-mir-3928"   "hsa-mir-3934"   "hsa-mir-483"   
## [41] "hsa-mir-499"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [45] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [49] "hsa-mir-511-2"  "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"  
## [53] "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [57] "hsa-mir-514b"   "hsa-mir-516a-1" "hsa-mir-516b-1" "hsa-mir-517a"  
## [61] "hsa-mir-519a-2" "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-552"   
## [65] "hsa-mir-561"    "hsa-mir-570"    "hsa-mir-577"    "hsa-mir-580"   
## [69] "hsa-mir-592"    "hsa-mir-656"    "hsa-mir-767"   
## [1] "bicluster15"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "PTEN.RPPA"      "ATM.RPPA"      
##  [5] "EGFR.RPPA"      "FASN.RPPA"      "INPP4B.RPPA"    "PDCD4.RPPA"    
##  [9] "TTF1.RPPA"      "CDK1.RPPA"      "VHL.RPPA"       "PRDX1.RPPA"    
## [13] "XBP1.RPPA"      "ERCC1.RPPA"     "MET.R2Gn"       "PRKCA.R2Gn"    
## [17] "TGM2.R2Gn"      "COL6A1.R2Gn"    "ANXA1.R2Gn"     "PXN.R2Gn"      
## [21] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-122"    "hsa-mir-1258"  
## [25] "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-130a"   "hsa-mir-137"   
## [29] "hsa-mir-146a"   "hsa-mir-153-1"  "hsa-mir-184"    "hsa-mir-196a-2"
## [33] "hsa-mir-196b"   "hsa-mir-2114"   "hsa-mir-218-1"  "hsa-mir-3170"  
## [37] "hsa-mir-3173"   "hsa-mir-320c-1" "hsa-mir-320c-2" "hsa-mir-3610"  
## [41] "hsa-mir-376a-2" "hsa-mir-377"    "hsa-mir-3940"   "hsa-mir-455"   
## [45] "hsa-mir-466"    "hsa-mir-483"    "hsa-mir-489"    "hsa-mir-496"   
## [49] "hsa-mir-507"    "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-514-1" 
## [53] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-548v"   "hsa-mir-551b"  
## [57] "hsa-mir-552"    "hsa-mir-570"    "hsa-mir-605"    "hsa-mir-607"   
## [61] "hsa-mir-615"    "hsa-mir-653"    "hsa-mir-654"    "hsa-mir-656"   
## [65] "hsa-mir-665"    "hsa-mir-7-2"    "hsa-mir-765"    "hsa-mir-770"   
## [69] "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-95"    
## [1] "bicluster25"
##  [1] "IGFBP2.RPPA"    "ATM.RPPA"       "AR.RPPA"        "GAPDH.RPPA"    
##  [5] "KDR.R2Gn"       "IGFBP2.R2Gn"    "YWHAZ.R2Gn"     "ITGA2.R2Gn"    
##  [9] "CTNNB1.R2Gn"    "PDCD4.R2Gn"     "PRRT2.R2Gn"     "PIK3R1.R2Gn"   
## [13] "BCL2L1.R2Gn"    "GAPDH.R2Gn"     "ANXA1.R2Gn"     "ERRFI1.R2Gn"   
## [17] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1249"   "hsa-mir-1269"  
## [21] "hsa-mir-1293"   "hsa-mir-135a-1" "hsa-mir-153-1"  "hsa-mir-182"   
## [25] "hsa-mir-183"    "hsa-mir-190b"   "hsa-mir-196a-2" "hsa-mir-196b"  
## [29] "hsa-mir-205"    "hsa-mir-22"     "hsa-mir-301b"   "hsa-mir-3170"  
## [33] "hsa-mir-3173"   "hsa-mir-3187"   "hsa-mir-3193"   "hsa-mir-320c-1"
## [37] "hsa-mir-329-2"  "hsa-mir-3610"   "hsa-mir-3620"   "hsa-mir-3687"  
## [41] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376c"   "hsa-mir-377"   
## [45] "hsa-mir-3928"   "hsa-mir-3940"   "hsa-mir-411"    "hsa-mir-466"   
## [49] "hsa-mir-483"    "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-513a-1"
## [53] "hsa-mir-513a-2" "hsa-mir-517a"   "hsa-mir-518c"   "hsa-mir-548q"  
## [57] "hsa-mir-551b"   "hsa-mir-580"    "hsa-mir-585"    "hsa-mir-615"   
## [61] "hsa-mir-642a"   "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-663"   
## [65] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-770"    "hsa-mir-873"   
## [69] "hsa-mir-876"    "hsa-mir-891a"   "hsa-mir-96"    
## [1] "bicluster22"
##  [1] "GATA3.RPPA"     "PEA15.RPPA"     "ATM.RPPA"       "FASN.RPPA"     
##  [5] "AR.RPPA"        "ERBB3.R2Gn"     "CDH2.R2Gn"      "PEA15.R2Gn"    
##  [9] "XRCC5.R2Gn"     "ADAR.R2Gn"      "EEF2.R2Gn"      "CTNNB1.R2Gn"   
## [13] "SHC1.R2Gn"      "TGM2.R2Gn"      "GAPDH.R2Gn"     "PARP1.R2Gn"    
## [17] "RPTOR.R2Gn"     "hsa-mir-105-1"  "hsa-mir-1249"   "hsa-mir-133b"  
## [21] "hsa-mir-135b"   "hsa-mir-139"    "hsa-mir-199a-2" "hsa-mir-199b"  
## [25] "hsa-mir-200a"   "hsa-mir-206"    "hsa-mir-3166"   "hsa-mir-3191"  
## [29] "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-3655"   "hsa-mir-3678"  
## [33] "hsa-mir-3922"   "hsa-mir-3926-2" "hsa-mir-3934"   "hsa-mir-429"   
## [37] "hsa-mir-506"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [41] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [45] "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [49] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"  
## [53] "hsa-mir-518b"   "hsa-mir-518c"   "hsa-mir-518f"   "hsa-mir-519a-1"
## [57] "hsa-mir-519a-2" "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-526b"  
## [61] "hsa-mir-548s"   "hsa-mir-579"    "hsa-mir-592"    "hsa-mir-605"   
## [65] "hsa-mir-618"    "hsa-mir-656"    "hsa-mir-7-2"    "hsa-mir-7-3"   
## [69] "hsa-mir-708"    "hsa-mir-767"    "hsa-mir-935"   
## [1] "bicluster1"
##  [1] "BRCA2.RPPA"     "FASN.RPPA"      "ACVRL1.RPPA"    "TTF1.RPPA"     
##  [5] "IRS1.RPPA"      "GAPDH.RPPA"     "TFRC.RPPA"      "ERBB3.R2Gn"    
##  [9] "FN1.R2Gn"       "AKT3.R2Gn"      "ADAR.R2Gn"      "FASN.R2Gn"     
## [13] "FOXO3.R2Gn"     "GAPDH.R2Gn"     "SQSTM1.R2Gn"    "hsa-mir-105-1" 
## [17] "hsa-mir-106a"   "hsa-mir-1185-2" "hsa-mir-124-3"  "hsa-mir-127"   
## [21] "hsa-mir-134"    "hsa-mir-135a-1" "hsa-mir-135a-2" "hsa-mir-136"   
## [25] "hsa-mir-137"    "hsa-mir-144"    "hsa-mir-154"    "hsa-mir-190"   
## [29] "hsa-mir-194-1"  "hsa-mir-202"    "hsa-mir-2114"   "hsa-mir-223"   
## [33] "hsa-mir-26a-1"  "hsa-mir-29a"    "hsa-mir-320c-1" "hsa-mir-323"   
## [37] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-34b"   
## [41] "hsa-mir-363"    "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-2"
## [45] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-379"    "hsa-mir-380"   
## [49] "hsa-mir-381"    "hsa-mir-3912"   "hsa-mir-409"    "hsa-mir-411"   
## [53] "hsa-mir-433"    "hsa-mir-451"    "hsa-mir-485"    "hsa-mir-486"   
## [57] "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-494"    "hsa-mir-495"   
## [61] "hsa-mir-511-1"  "hsa-mir-517a"   "hsa-mir-525"    "hsa-mir-541"   
## [65] "hsa-mir-543"    "hsa-mir-580"    "hsa-mir-654"    "hsa-mir-655"   
## [69] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-770"   
## [1] "bicluster28"
##  [1] "TFRC.RPPA"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [5] "GATA3.R2Gn"     "CCND1.R2Gn"     "XBP1.R2Gn"      "GAPDH.R2Gn"    
##  [9] "MYH9.R2Gn"      "TFRC.R2Gn"      "HSPA1A.R2Gn"    "ERRFI1.R2Gn"   
## [13] "PARP1.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1193"   "hsa-mir-1197"  
## [17] "hsa-mir-1249"   "hsa-mir-1258"   "hsa-mir-1269"   "hsa-mir-1270-1"
## [21] "hsa-mir-135a-1" "hsa-mir-138-1"  "hsa-mir-138-2"  "hsa-mir-139"   
## [25] "hsa-mir-154"    "hsa-mir-187"    "hsa-mir-196a-2" "hsa-mir-205"   
## [29] "hsa-mir-216b"   "hsa-mir-3130-1" "hsa-mir-3173"   "hsa-mir-323"   
## [33] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-346"    "hsa-mir-34b"   
## [37] "hsa-mir-3619"   "hsa-mir-3687"   "hsa-mir-376a-1" "hsa-mir-376a-2"
## [41] "hsa-mir-380"    "hsa-mir-3926-1" "hsa-mir-410"    "hsa-mir-411"   
## [45] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"  
## [49] "hsa-mir-488"    "hsa-mir-489"    "hsa-mir-490"    "hsa-mir-493"   
## [53] "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-510"   
## [57] "hsa-mir-517a"   "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-548q"  
## [61] "hsa-mir-585"    "hsa-mir-615"    "hsa-mir-636"    "hsa-mir-655"   
## [65] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-760"    "hsa-mir-885"   
## [69] "hsa-mir-887"    "hsa-mir-9-3"    "hsa-mir-935"   
## [1] "bicluster12"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "TTF1.RPPA"      "GAPDH.RPPA"    
##  [5] "MSH6.RPPA"      "TFRC.RPPA"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
##  [9] "FN1.R2Gn"       "CDKN1A.R2Gn"    "GATA3.R2Gn"     "CCNE1.R2Gn"    
## [13] "STMN1.R2Gn"     "CDK1.R2Gn"      "PRDX1.R2Gn"     "GAPDH.R2Gn"    
## [17] "TUBA1B.R2Gn"    "FOXM1.R2Gn"     "HSPA1A.R2Gn"    "SNAI2.R2Gn"    
## [21] "RET.R2Gn"       "SQSTM1.R2Gn"    "hsa-mir-105-2"  "hsa-mir-1185-1"
## [25] "hsa-mir-1185-2" "hsa-mir-1262"   "hsa-mir-1269"   "hsa-mir-129-2" 
## [29] "hsa-mir-1293"   "hsa-mir-200a"   "hsa-mir-2114"   "hsa-mir-29b-1" 
## [33] "hsa-mir-29b-2"  "hsa-mir-29c"    "hsa-mir-31"     "hsa-mir-3144"  
## [37] "hsa-mir-320c-2" "hsa-mir-34b"    "hsa-mir-3655"   "hsa-mir-3662"  
## [41] "hsa-mir-3677"   "hsa-mir-377"    "hsa-mir-3923"   "hsa-mir-3934"  
## [45] "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-4326"   "hsa-mir-485"   
## [49] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-506"    "hsa-mir-507"   
## [53] "hsa-mir-510"    "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-514-1" 
## [57] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-548q"  
## [61] "hsa-mir-627"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-675"   
## [65] "hsa-mir-767"    "hsa-mir-891a"   "hsa-mir-9-1"    "hsa-mir-9-2"   
## [69] "hsa-mir-9-3"    "hsa-mir-935"    "hsa-mir-937"   
## [1] "bicluster20"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "AR.RPPA"        "ERBB3.R2Gn"    
##  [5] "IGFBP2.R2Gn"    "FN1.R2Gn"       "AKT3.R2Gn"      "RAD51.R2Gn"    
##  [9] "BECN1.R2Gn"     "EIF4G1.R2Gn"    "AXL.R2Gn"       "BIRC2.R2Gn"    
## [13] "ADAR.R2Gn"      "ACVRL1.R2Gn"    "CTNNB1.R2Gn"    "RPS6.R2Gn"     
## [17] "ANLN.R2Gn"      "STMN1.R2Gn"     "CDK1.R2Gn"      "E2F1.R2Gn"     
## [21] "CTNNA1.R2Gn"    "MYC.R2Gn"       "CAV1.R2Gn"      "TYMS.R2Gn"     
## [25] "CCNB1.R2Gn"     "TUBA1B.R2Gn"    "FOXM1.R2Gn"     "COL6A1.R2Gn"   
## [29] "YWHAB.R2Gn"     "EZH2.R2Gn"      "BID.R2Gn"       "CCNE2.R2Gn"    
## [33] "CDKN2A.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1245"   "hsa-mir-1247"  
## [37] "hsa-mir-1262"   "hsa-mir-1296"   "hsa-mir-135a-1" "hsa-mir-135a-2"
## [41] "hsa-mir-135b"   "hsa-mir-138-1"  "hsa-mir-138-2"  "hsa-mir-187"   
## [45] "hsa-mir-202"    "hsa-mir-216a"   "hsa-mir-29c"    "hsa-mir-3130-1"
## [49] "hsa-mir-3144"   "hsa-mir-3191"   "hsa-mir-3676"   "hsa-mir-372"   
## [53] "hsa-mir-3923"   "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-499"   
## [57] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [61] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-514-1"  "hsa-mir-514-2" 
## [65] "hsa-mir-514-3"  "hsa-mir-516b-1" "hsa-mir-548v"   "hsa-mir-765"   
## [69] "hsa-mir-876"    "hsa-mir-887"    "hsa-mir-940"   
## [1] "bicluster11"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "EGFR.RPPA"      "AR.RPPA"       
##  [5] "MSH6.RPPA"      "G6PD.R2Gn"      "ERBB3.R2Gn"     "FN1.R2Gn"      
##  [9] "EEF2.R2Gn"      "TGM2.R2Gn"      "CCND1.R2Gn"     "COL6A1.R2Gn"   
## [13] "HSPA1A.R2Gn"    "SYP.R2Gn"       "hsa-mir-1185-1" "hsa-mir-1185-2"
## [17] "hsa-mir-1197"   "hsa-mir-1269"   "hsa-mir-127"    "hsa-mir-1270-1"
## [21] "hsa-mir-1270-2" "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-200a"  
## [25] "hsa-mir-205"    "hsa-mir-206"    "hsa-mir-216b"   "hsa-mir-323"   
## [29] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-3655"  
## [33] "hsa-mir-370"    "hsa-mir-376a-2" "hsa-mir-376c"   "hsa-mir-377"   
## [37] "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"   
## [41] "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-466"   
## [45] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-494"   
## [49] "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-516a-1" "hsa-mir-516a-2"
## [53] "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-518c"   "hsa-mir-520a"  
## [57] "hsa-mir-525"    "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"   
## [61] "hsa-mir-551b"   "hsa-mir-580"    "hsa-mir-592"    "hsa-mir-639"   
## [65] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
## [69] "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-889"   
## [1] "bicluster14"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "PDCD4.RPPA"     "IRS1.RPPA"     
##  [5] "GAPDH.RPPA"     "MSH6.RPPA"      "NF2.RPPA"       "ERBB2.R2Gn"    
##  [9] "G6PD.R2Gn"      "ERBB3.R2Gn"     "FN1.R2Gn"       "SMAD3.R2Gn"    
## [13] "FASN.R2Gn"      "ACVRL1.R2Gn"    "CTNNB1.R2Gn"    "ANLN.R2Gn"     
## [17] "STMN1.R2Gn"     "FOXO3.R2Gn"     "BCL2.R2Gn"      "CCND1.R2Gn"    
## [21] "XBP1.R2Gn"      "GAPDH.R2Gn"     "COL6A1.R2Gn"    "TFRC.R2Gn"     
## [25] "HSPA1A.R2Gn"    "SYP.R2Gn"       "SNAI2.R2Gn"     "hsa-mir-105-1" 
## [29] "hsa-mir-105-2"  "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1269"  
## [33] "hsa-mir-1293"   "hsa-mir-153-1"  "hsa-mir-199a-1" "hsa-mir-199a-2"
## [37] "hsa-mir-200a"   "hsa-mir-200b"   "hsa-mir-202"    "hsa-mir-214"   
## [41] "hsa-mir-26a-1"  "hsa-mir-301b"   "hsa-mir-3130-1" "hsa-mir-3199-1"
## [45] "hsa-mir-3200"   "hsa-mir-320c-2" "hsa-mir-329-1"  "hsa-mir-3655"  
## [49] "hsa-mir-3690"   "hsa-mir-3926-1" "hsa-mir-429"    "hsa-mir-433"   
## [53] "hsa-mir-488"    "hsa-mir-511-1"  "hsa-mir-511-2"  "hsa-mir-516a-1"
## [57] "hsa-mir-517a"   "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-526b"  
## [61] "hsa-mir-548j"   "hsa-mir-548q"   "hsa-mir-577"    "hsa-mir-585"   
## [65] "hsa-mir-598"    "hsa-mir-668"    "hsa-mir-767"    "hsa-mir-885"   
## [69] "hsa-mir-887"    "hsa-mir-9-3"    "hsa-mir-940"   
## [1] "bicluster17"
##  [1] "PTEN.RPPA"      "PEA15.RPPA"     "EGFR.RPPA"      "TSC1.RPPA"     
##  [5] "TTF1.RPPA"      "VHL.RPPA"       "GAPDH.RPPA"     "MSH2.RPPA"     
##  [9] "DIRAS3.R2Gn"    "ERBB3.R2Gn"     "CDH2.R2Gn"      "PEA15.R2Gn"    
## [13] "ITGA2.R2Gn"     "ADAR.R2Gn"      "SERPINE1.R2Gn"  "CTNNB1.R2Gn"   
## [17] "SHC1.R2Gn"      "RAB11A.R2Gn"    "CCND1.R2Gn"     "PIK3R1.R2Gn"   
## [21] "GAPDH.R2Gn"     "PXN.R2Gn"       "ANXA7.R2Gn"     "CHGA.R2Gn"     
## [25] "IDH3A.R2Gn"     "hsa-mir-1226"   "hsa-mir-1249"   "hsa-mir-1255a" 
## [29] "hsa-mir-1258"   "hsa-mir-1292"   "hsa-mir-138-1"  "hsa-mir-138-2" 
## [33] "hsa-mir-144"    "hsa-mir-182"    "hsa-mir-184"    "hsa-mir-216a"  
## [37] "hsa-mir-218-1"  "hsa-mir-218-2"  "hsa-mir-219-1"  "hsa-mir-30c-1" 
## [41] "hsa-mir-3170"   "hsa-mir-3190"   "hsa-mir-3191"   "hsa-mir-3199-2"
## [45] "hsa-mir-3647"   "hsa-mir-3651"   "hsa-mir-3652"   "hsa-mir-383"   
## [49] "hsa-mir-4326"   "hsa-mir-451"    "hsa-mir-506"    "hsa-mir-507"   
## [53] "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3" 
## [57] "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"  
## [61] "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [65] "hsa-mir-514b"   "hsa-mir-520a"   "hsa-mir-659"    "hsa-mir-760"   
## [69] "hsa-mir-876"    "hsa-mir-940"    "hsa-mir-96"    
## [1] "bicluster33"
##  [1] "IGFBP2.RPPA"    "AR.RPPA"        "TFRC.RPPA"      "IGFBP2.R2Gn"   
##  [5] "FN1.R2Gn"       "FASN.R2Gn"      "EEF2.R2Gn"      "JUN.R2Gn"      
##  [9] "FOXO3.R2Gn"     "TGM2.R2Gn"      "PIK3R1.R2Gn"    "NDRG1.R2Gn"    
## [13] "HSPA1A.R2Gn"    "ERRFI1.R2Gn"    "hsa-mir-1185-2" "hsa-mir-122"   
## [17] "hsa-mir-1247"   "hsa-mir-1249"   "hsa-mir-1269"   "hsa-mir-129-1" 
## [21] "hsa-mir-129-2"  "hsa-mir-1292"   "hsa-mir-138-1"  "hsa-mir-138-2" 
## [25] "hsa-mir-154"    "hsa-mir-1909"   "hsa-mir-196a-2" "hsa-mir-216b"  
## [29] "hsa-mir-3144"   "hsa-mir-3170"   "hsa-mir-3173"   "hsa-mir-3191"  
## [33] "hsa-mir-3193"   "hsa-mir-320c-1" "hsa-mir-323b"   "hsa-mir-329-1" 
## [37] "hsa-mir-329-2"  "hsa-mir-346"    "hsa-mir-3662"   "hsa-mir-3678"  
## [41] "hsa-mir-370"    "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-383"   
## [45] "hsa-mir-411"    "hsa-mir-487a"   "hsa-mir-490"    "hsa-mir-494"   
## [49] "hsa-mir-504"    "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-516a-1"
## [53] "hsa-mir-516a-2" "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-519a-1"
## [57] "hsa-mir-519a-2" "hsa-mir-520a"   "hsa-mir-526b"   "hsa-mir-541"   
## [61] "hsa-mir-615"    "hsa-mir-642a"   "hsa-mir-654"    "hsa-mir-655"   
## [65] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-760"    "hsa-mir-770"   
## [69] "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-885"   
## [1] "bicluster5"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "ASNS.RPPA"      "RBM15.RPPA"    
##  [5] "PEA15.RPPA"     "ATM.RPPA"       "EGFR.RPPA"      "PCNA.RPPA"     
##  [9] "TSC1.RPPA"      "VHL.RPPA"       "GAPDH.RPPA"     "NF2.RPPA"      
## [13] "TFRC.RPPA"      "IGFBP2.R2Gn"    "AKT1.R2Gn"      "CDH2.R2Gn"     
## [17] "CDKN1A.R2Gn"    "PEA15.R2Gn"     "SMAD3.R2Gn"     "ADAR.R2Gn"     
## [21] "SERPINE1.R2Gn"  "YWHAE.R2Gn"     "SMAD4.R2Gn"     "CTNNB1.R2Gn"   
## [25] "SHC1.R2Gn"      "FOXO3.R2Gn"     "GAPDH.R2Gn"     "COL6A1.R2Gn"   
## [29] "TFRC.R2Gn"      "ERRFI1.R2Gn"    "SYP.R2Gn"       "RBM3.R2Gn"     
## [33] "SNAI2.R2Gn"     "hsa-mir-1179"   "hsa-mir-1228"   "hsa-mir-1249"  
## [37] "hsa-mir-1255a"  "hsa-mir-1262"   "hsa-mir-1305"   "hsa-mir-184"   
## [41] "hsa-mir-200a"   "hsa-mir-200b"   "hsa-mir-206"    "hsa-mir-217"   
## [45] "hsa-mir-218-1"  "hsa-mir-218-2"  "hsa-mir-219-1"  "hsa-mir-296"   
## [49] "hsa-mir-301b"   "hsa-mir-3173"   "hsa-mir-320b-2" "hsa-mir-3610"  
## [53] "hsa-mir-3648"   "hsa-mir-3653"   "hsa-mir-3676"   "hsa-mir-3687"  
## [57] "hsa-mir-3909"   "hsa-mir-3917"   "hsa-mir-3926-1" "hsa-mir-3940"  
## [61] "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-4326"   "hsa-mir-454"   
## [65] "hsa-mir-490"    "hsa-mir-548q"   "hsa-mir-552"    "hsa-mir-580"   
## [69] "hsa-mir-615"    "hsa-mir-675"    "hsa-mir-885"   
## [1] "bicluster18"
##  [1] "GATA3.RPPA"     "PEA15.RPPA"     "GAPDH.RPPA"     "TFRC.RPPA"     
##  [5] "MAPK14.R2Gn"    "ERBB3.R2Gn"     "AKT1S1.R2Gn"    "CDH2.R2Gn"     
##  [9] "BECN1.R2Gn"     "GATA3.R2Gn"     "EIF4G1.R2Gn"    "MAPK1.R2Gn"    
## [13] "BIRC2.R2Gn"     "VASP.R2Gn"      "XRCC5.R2Gn"     "ITGA2.R2Gn"    
## [17] "ADAR.R2Gn"      "EEF2.R2Gn"      "CTNNB1.R2Gn"    "RPS6.R2Gn"     
## [21] "CDH3.R2Gn"      "TGM2.R2Gn"      "MS4A1.R2Gn"     "LCK.R2Gn"      
## [25] "XRCC1.R2Gn"     "TP63.R2Gn"      "GAPDH.R2Gn"     "MYH9.R2Gn"     
## [29] "NDRG1.R2Gn"     "ERCC1.R2Gn"     "BID.R2Gn"       "TFRC.R2Gn"     
## [33] "PXN.R2Gn"       "ERRFI1.R2Gn"    "PARP1.R2Gn"     "TFF1.R2Gn"     
## [37] "KCNJ13.R2Gn"    "hsa-mir-124-3"  "hsa-mir-1254"   "hsa-mir-1269"  
## [41] "hsa-mir-1304"   "hsa-mir-153-2"  "hsa-mir-196b"   "hsa-mir-203"   
## [45] "hsa-mir-216b"   "hsa-mir-224"    "hsa-mir-3130-1" "hsa-mir-3170"  
## [49] "hsa-mir-320c-2" "hsa-mir-3678"   "hsa-mir-383"    "hsa-mir-3922"  
## [53] "hsa-mir-452"    "hsa-mir-490"    "hsa-mir-499"    "hsa-mir-506"   
## [57] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [61] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [65] "hsa-mir-513b"   "hsa-mir-514b"   "hsa-mir-516a-1" "hsa-mir-516b-1"
## [69] "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-643"   
## [1] "bicluster26"
##  [1] "G6PD.RPPA"      "PTEN.RPPA"      "EGFR.RPPA"      "PDCD4.RPPA"    
##  [5] "AR.RPPA"        "TFRC.RPPA"      "KDR.R2Gn"       "ERBB3.R2Gn"    
##  [9] "FN1.R2Gn"       "CDH2.R2Gn"      "ITGA2.R2Gn"     "ADAR.R2Gn"     
## [13] "SERPINE1.R2Gn"  "PRKCA.R2Gn"     "JUN.R2Gn"       "PIK3R1.R2Gn"   
## [17] "TFRC.R2Gn"      "ERRFI1.R2Gn"    "SQSTM1.R2Gn"    "hsa-mir-1185-1"
## [21] "hsa-mir-1185-2" "hsa-mir-124-1"  "hsa-mir-1249"   "hsa-mir-1305"  
## [25] "hsa-mir-134"    "hsa-mir-190b"   "hsa-mir-2114"   "hsa-mir-216b"  
## [29] "hsa-mir-217"    "hsa-mir-224"    "hsa-mir-296"    "hsa-mir-3130-1"
## [33] "hsa-mir-3144"   "hsa-mir-3170"   "hsa-mir-3173"   "hsa-mir-3193"  
## [37] "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-329-1"  "hsa-mir-346"   
## [41] "hsa-mir-3652"   "hsa-mir-3662"   "hsa-mir-376a-1" "hsa-mir-376a-2"
## [45] "hsa-mir-377"    "hsa-mir-3923"   "hsa-mir-429"    "hsa-mir-433"   
## [49] "hsa-mir-452"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-488"   
## [53] "hsa-mir-494"    "hsa-mir-499"    "hsa-mir-516a-1" "hsa-mir-525"   
## [57] "hsa-mir-548q"   "hsa-mir-548s"   "hsa-mir-577"    "hsa-mir-579"   
## [61] "hsa-mir-580"    "hsa-mir-627"    "hsa-mir-654"    "hsa-mir-655"   
## [65] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-675"    "hsa-mir-760"   
## [69] "hsa-mir-770"    "hsa-mir-873"    "hsa-mir-876"   
## [1] "bicluster3"
##  [1] "IGFBP2.RPPA"    "PTEN.RPPA"      "ACVRL1.RPPA"    "PDCD4.RPPA"    
##  [5] "ERCC1.RPPA"     "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [9] "CDH2.R2Gn"      "BECN1.R2Gn"     "GATA3.R2Gn"     "PEA15.R2Gn"    
## [13] "XRCC5.R2Gn"     "ADAR.R2Gn"      "SERPINE1.R2Gn"  "JUN.R2Gn"      
## [17] "PIK3R1.R2Gn"    "GAPDH.R2Gn"     "NRG1.R2Gn"      "MYH9.R2Gn"     
## [21] "TFRC.R2Gn"      "ERRFI1.R2Gn"    "SYP.R2Gn"       "PARP1.R2Gn"    
## [25] "TFF1.R2Gn"      "CHGA.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2"
## [29] "hsa-mir-1229"   "hsa-mir-124-3"  "hsa-mir-1248"   "hsa-mir-1270-1"
## [33] "hsa-mir-129-2"  "hsa-mir-1292"   "hsa-mir-1304"   "hsa-mir-182"   
## [37] "hsa-mir-183"    "hsa-mir-187"    "hsa-mir-206"    "hsa-mir-2114"  
## [41] "hsa-mir-216b"   "hsa-mir-301b"   "hsa-mir-3191"   "hsa-mir-329-1" 
## [45] "hsa-mir-329-2"  "hsa-mir-346"    "hsa-mir-34b"    "hsa-mir-3678"  
## [49] "hsa-mir-3922"   "hsa-mir-429"    "hsa-mir-511-2"  "hsa-mir-516a-1"
## [53] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [57] "hsa-mir-518f"   "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"  
## [61] "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-570"    "hsa-mir-636"   
## [65] "hsa-mir-663"    "hsa-mir-7-2"    "hsa-mir-760"    "hsa-mir-765"   
## [69] "hsa-mir-887"    "hsa-mir-9-3"    "hsa-mir-96"    
## [1] "bicluster23"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "PTEN.RPPA"      "EGFR.RPPA"     
##  [5] "FASN.RPPA"      "TTF1.RPPA"      "IRS1.RPPA"      "ERCC1.RPPA"    
##  [9] "DIRAS3.R2Gn"    "SRC.R2Gn"       "AKT1.R2Gn"      "PTEN.R2Gn"     
## [13] "ADAR.R2Gn"      "EGFR.R2Gn"      "SERPINE1.R2Gn"  "SHC1.R2Gn"     
## [17] "TGM2.R2Gn"      "IRS1.R2Gn"      "PIK3R1.R2Gn"    "TUBA1B.R2Gn"   
## [21] "TFRC.R2Gn"      "PXN.R2Gn"       "ERRFI1.R2Gn"    "SYP.R2Gn"      
## [25] "ANXA7.R2Gn"     "CHGA.R2Gn"      "hsa-mir-1251"   "hsa-mir-1269"  
## [29] "hsa-mir-129-1"  "hsa-mir-129-2"  "hsa-mir-135a-1" "hsa-mir-135a-2"
## [33] "hsa-mir-138-2"  "hsa-mir-184"    "hsa-mir-187"    "hsa-mir-196a-1"
## [37] "hsa-mir-196a-2" "hsa-mir-216b"   "hsa-mir-217"    "hsa-mir-2277"  
## [41] "hsa-mir-26a-1"  "hsa-mir-301b"   "hsa-mir-30c-1"  "hsa-mir-3193"  
## [45] "hsa-mir-329-2"  "hsa-mir-3651"   "hsa-mir-3652"   "hsa-mir-3678"  
## [49] "hsa-mir-3687"   "hsa-mir-3922"   "hsa-mir-3926-1" "hsa-mir-433"   
## [53] "hsa-mir-487a"   "hsa-mir-516a-1" "hsa-mir-517a"   "hsa-mir-541"   
## [57] "hsa-mir-548s"   "hsa-mir-551b"   "hsa-mir-552"    "hsa-mir-570"   
## [61] "hsa-mir-605"    "hsa-mir-636"    "hsa-mir-659"    "hsa-mir-663"   
## [65] "hsa-mir-665"    "hsa-mir-7-2"    "hsa-mir-7-3"    "hsa-mir-767"   
## [69] "hsa-mir-9-1"    "hsa-mir-9-2"    "hsa-mir-9-3"   
## [1] "bicluster4"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "ASNS.RPPA"      "RBM15.RPPA"    
##  [5] "ATM.RPPA"       "FASN.RPPA"      "PRDX1.RPPA"     "MSH6.RPPA"     
##  [9] "PREX1.RPPA"     "G6PD.R2Gn"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
## [13] "FN1.R2Gn"       "FASN.R2Gn"      "PTK2.R2Gn"      "TGM2.R2Gn"     
## [17] "CCND1.R2Gn"     "BCL2L1.R2Gn"    "GAPDH.R2Gn"     "PIK3R2.R2Gn"   
## [21] "ERRFI1.R2Gn"    "SYP.R2Gn"       "SNAI2.R2Gn"     "SQSTM1.R2Gn"   
## [25] "hsa-mir-105-1"  "hsa-mir-1248"   "hsa-mir-1249"   "hsa-mir-135b"  
## [29] "hsa-mir-142"    "hsa-mir-146a"   "hsa-mir-200a"   "hsa-mir-200b"  
## [33] "hsa-mir-2114"   "hsa-mir-216b"   "hsa-mir-218-1"  "hsa-mir-223"   
## [37] "hsa-mir-29a"    "hsa-mir-29b-1"  "hsa-mir-29b-2"  "hsa-mir-29c"   
## [41] "hsa-mir-301b"   "hsa-mir-31"     "hsa-mir-3191"   "hsa-mir-326"   
## [45] "hsa-mir-34b"    "hsa-mir-3610"   "hsa-mir-3614"   "hsa-mir-362"   
## [49] "hsa-mir-3620"   "hsa-mir-363"    "hsa-mir-3690"   "hsa-mir-3909"  
## [53] "hsa-mir-3923"   "hsa-mir-3926-1" "hsa-mir-429"    "hsa-mir-488"   
## [57] "hsa-mir-489"    "hsa-mir-510"    "hsa-mir-511-1"  "hsa-mir-511-2" 
## [61] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-548j"   "hsa-mir-548q"  
## [65] "hsa-mir-584"    "hsa-mir-605"    "hsa-mir-627"    "hsa-mir-642a"  
## [69] "hsa-mir-891a"   "hsa-mir-9-1"    "hsa-mir-9-2"   
## [1] "bicluster8"
##  [1] "IGFBP2.RPPA"    "PTEN.RPPA"      "GATA3.RPPA"     "PEA15.RPPA"    
##  [5] "ATM.RPPA"       "FASN.RPPA"      "VHL.RPPA"       "PRDX1.RPPA"    
##  [9] "MSH6.RPPA"      "MYH11.RPPA"     "TFRC.RPPA"      "KDR.R2Gn"      
## [13] "ERBB3.R2Gn"     "EIF4EBP1.R2Gn"  "FN1.R2Gn"       "AKT2.R2Gn"     
## [17] "CDH2.R2Gn"      "EIF4G1.R2Gn"    "EEF2.R2Gn"      "SERPINE1.R2Gn" 
## [21] "PDCD4.R2Gn"     "GAPDH.R2Gn"     "PDK1.R2Gn"      "NDRG1.R2Gn"    
## [25] "YWHAB.R2Gn"     "ARID1A.R2Gn"    "HSPA1A.R2Gn"    "ERRFI1.R2Gn"   
## [29] "CHGA.R2Gn"      "hsa-mir-122"    "hsa-mir-1270-1" "hsa-mir-1270-2"
## [33] "hsa-mir-135b"   "hsa-mir-137"    "hsa-mir-138-2"  "hsa-mir-141"   
## [37] "hsa-mir-146b"   "hsa-mir-184"    "hsa-mir-188"    "hsa-mir-194-1" 
## [41] "hsa-mir-194-2"  "hsa-mir-199a-1" "hsa-mir-199a-2" "hsa-mir-199b"  
## [45] "hsa-mir-210"    "hsa-mir-214"    "hsa-mir-26a-1"  "hsa-mir-30c-1" 
## [49] "hsa-mir-3166"   "hsa-mir-3170"   "hsa-mir-363"    "hsa-mir-3678"  
## [53] "hsa-mir-3909"   "hsa-mir-3926-2" "hsa-mir-3934"   "hsa-mir-3940"  
## [57] "hsa-mir-516a-2" "hsa-mir-519a-2" "hsa-mir-520a"   "hsa-mir-526b"  
## [61] "hsa-mir-548s"   "hsa-mir-552"    "hsa-mir-577"    "hsa-mir-592"   
## [65] "hsa-mir-605"    "hsa-mir-627"    "hsa-mir-639"    "hsa-mir-675"   
## [69] "hsa-mir-765"    "hsa-mir-9-3"    "hsa-mir-939"   
## [1] "bicluster6"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "RBM15.RPPA"     "GATA3.RPPA"    
##  [5] "ATM.RPPA"       "EGFR.RPPA"      "FASN.RPPA"      "PRDX1.RPPA"    
##  [9] "XBP1.RPPA"      "MSH6.RPPA"      "MSH2.RPPA"      "G6PD.R2Gn"     
## [13] "KDR.R2Gn"       "IGFBP2.R2Gn"    "FN1.R2Gn"       "CDH2.R2Gn"     
## [17] "RB1.R2Gn"       "EIF4G1.R2Gn"    "SERPINE1.R2Gn"  "KIT.R2Gn"      
## [21] "NDRG1.R2Gn"     "HSPA1A.R2Gn"    "ERRFI1.R2Gn"    "SYP.R2Gn"      
## [25] "RET.R2Gn"       "hsa-mir-1228"   "hsa-mir-1247"   "hsa-mir-1248"  
## [29] "hsa-mir-1249"   "hsa-mir-1254"   "hsa-mir-1269"   "hsa-mir-135b"  
## [33] "hsa-mir-137"    "hsa-mir-138-1"  "hsa-mir-138-2"  "hsa-mir-1909"  
## [37] "hsa-mir-210"    "hsa-mir-216a"   "hsa-mir-218-1"  "hsa-mir-296"   
## [41] "hsa-mir-3065"   "hsa-mir-30c-1"  "hsa-mir-3130-1" "hsa-mir-3144"  
## [45] "hsa-mir-3199-1" "hsa-mir-328"    "hsa-mir-3610"   "hsa-mir-3619"  
## [49] "hsa-mir-3620"   "hsa-mir-372"    "hsa-mir-3912"   "hsa-mir-3926-1"
## [53] "hsa-mir-3926-2" "hsa-mir-3928"   "hsa-mir-483"    "hsa-mir-488"   
## [57] "hsa-mir-504"    "hsa-mir-511-2"  "hsa-mir-548v"   "hsa-mir-561"   
## [61] "hsa-mir-579"    "hsa-mir-585"    "hsa-mir-592"    "hsa-mir-598"   
## [65] "hsa-mir-605"    "hsa-mir-659"    "hsa-mir-760"    "hsa-mir-765"   
## [69] "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-99a"   
## [1] "bicluster35"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "GATA3.RPPA"     "PEA15.RPPA"    
##  [5] "PDCD4.RPPA"     "AR.RPPA"        "PRDX1.RPPA"     "GAPDH.RPPA"    
##  [9] "IGFBP2.R2Gn"    "FN1.R2Gn"       "CDH2.R2Gn"      "VASP.R2Gn"     
## [13] "EEF2.R2Gn"      "YWHAE.R2Gn"     "RPS6.R2Gn"      "PRKCA.R2Gn"    
## [17] "PRRT2.R2Gn"     "CAV1.R2Gn"      "PIK3R1.R2Gn"    "PRDX1.R2Gn"    
## [21] "GAPDH.R2Gn"     "HSPA1A.R2Gn"    "ERRFI1.R2Gn"    "hsa-mir-105-1" 
## [25] "hsa-mir-1224"   "hsa-mir-1229"   "hsa-mir-1255a"  "hsa-mir-129-1" 
## [29] "hsa-mir-129-2"  "hsa-mir-1292"   "hsa-mir-204"    "hsa-mir-205"   
## [33] "hsa-mir-2114"   "hsa-mir-216a"   "hsa-mir-3191"   "hsa-mir-3200"  
## [37] "hsa-mir-346"    "hsa-mir-3620"   "hsa-mir-3687"   "hsa-mir-3926-2"
## [41] "hsa-mir-3928"   "hsa-mir-450a-1" "hsa-mir-450a-2" "hsa-mir-450b"  
## [45] "hsa-mir-455"    "hsa-mir-483"    "hsa-mir-488"    "hsa-mir-507"   
## [49] "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-3"  "hsa-mir-510"   
## [53] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513c"   "hsa-mir-514b"  
## [57] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518c"   "hsa-mir-526b"  
## [61] "hsa-mir-545"    "hsa-mir-550a-2" "hsa-mir-552"    "hsa-mir-585"   
## [65] "hsa-mir-615"    "hsa-mir-7-3"    "hsa-mir-760"    "hsa-mir-766"   
## [69] "hsa-mir-891a"   "hsa-mir-937"    "hsa-mir-95"    
## [1] "bicluster32"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "RBM15.RPPA"     "DIRAS3.R2Gn"   
##  [5] "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "CDKN1A.R2Gn"    "GATA3.R2Gn"    
##  [9] "EEF2.R2Gn"      "SERPINE1.R2Gn"  "CTNNB1.R2Gn"    "RPS6.R2Gn"     
## [13] "CCND1.R2Gn"     "PRDX1.R2Gn"     "NRG1.R2Gn"      "TFRC.R2Gn"     
## [17] "HSPA1A.R2Gn"    "RPTOR.R2Gn"     "TFF1.R2Gn"      "CDKN2A.R2Gn"   
## [21] "IDH3A.R2Gn"     "hsa-mir-105-1"  "hsa-mir-105-2"  "hsa-mir-122"   
## [25] "hsa-mir-1226"   "hsa-mir-1249"   "hsa-mir-1258"   "hsa-mir-1269"  
## [29] "hsa-mir-1270-1" "hsa-mir-1305"   "hsa-mir-133b"   "hsa-mir-141"   
## [33] "hsa-mir-144"    "hsa-mir-182"    "hsa-mir-183"    "hsa-mir-191"   
## [37] "hsa-mir-205"    "hsa-mir-3170"   "hsa-mir-3173"   "hsa-mir-3199-2"
## [41] "hsa-mir-3690"   "hsa-mir-3926-2" "hsa-mir-3928"   "hsa-mir-451"   
## [45] "hsa-mir-486"    "hsa-mir-506"    "hsa-mir-508"    "hsa-mir-509-1" 
## [49] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-2"
## [53] "hsa-mir-513b"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [57] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a"   "hsa-mir-518c"  
## [61] "hsa-mir-518f"   "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-552"   
## [65] "hsa-mir-561"    "hsa-mir-570"    "hsa-mir-580"    "hsa-mir-663"   
## [69] "hsa-mir-7-2"    "hsa-mir-760"    "hsa-mir-96"    
## [1] "bicluster30"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "RBM15.RPPA"     "GATA3.RPPA"    
##  [5] "BRCA2.RPPA"     "EGFR.RPPA"      "INPP4B.RPPA"    "ACVRL1.RPPA"   
##  [9] "PDCD4.RPPA"     "CDK1.RPPA"      "PRDX1.RPPA"     "XBP1.RPPA"     
## [13] "TFRC.RPPA"      "PREX1.RPPA"     "G6PD.R2Gn"      "IGFBP2.R2Gn"   
## [17] "FN1.R2Gn"       "BAP1.R2Gn"      "ADAR.R2Gn"      "PCNA.R2Gn"     
## [21] "CTNNB1.R2Gn"    "RPS6.R2Gn"      "PRKCA.R2Gn"     "SHC1.R2Gn"     
## [25] "STMN1.R2Gn"     "CDK1.R2Gn"      "CCND1.R2Gn"     "CCNB1.R2Gn"    
## [29] "STAT5A.R2Gn"    "PXN.R2Gn"       "ERRFI1.R2Gn"    "SYP.R2Gn"      
## [33] "SQSTM1.R2Gn"    "hsa-mir-105-2"  "hsa-mir-124-2"  "hsa-mir-1245"  
## [37] "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1274b"  "hsa-mir-137"   
## [41] "hsa-mir-138-1"  "hsa-mir-138-2"  "hsa-mir-153-1"  "hsa-mir-204"   
## [45] "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-214"    "hsa-mir-3187"  
## [49] "hsa-mir-320c-2" "hsa-mir-3610"   "hsa-mir-3614"   "hsa-mir-3655"  
## [53] "hsa-mir-3678"   "hsa-mir-3917"   "hsa-mir-455"    "hsa-mir-487a"  
## [57] "hsa-mir-489"    "hsa-mir-499"    "hsa-mir-504"    "hsa-mir-519a-2"
## [61] "hsa-mir-551b"   "hsa-mir-552"    "hsa-mir-561"    "hsa-mir-570"   
## [65] "hsa-mir-577"    "hsa-mir-605"    "hsa-mir-607"    "hsa-mir-618"   
## [69] "hsa-mir-639"    "hsa-mir-652"    "hsa-mir-891a"
f43_10 = top_x_percent(fabia_43, perct = 10)
## [1] "bicluster41"
##  [1] "G6PD.RPPA"      "ASNS.RPPA"      "RBM15.RPPA"     "PTEN.RPPA"     
##  [5] "ATM.RPPA"       "FASN.RPPA"      "INPP4B.RPPA"    "PDCD4.RPPA"    
##  [9] "CDK1.RPPA"      "VHL.RPPA"       "PRDX1.RPPA"     "XBP1.RPPA"     
## [13] "MSH6.RPPA"      "AKT1.R2Gn"      "ADAR.R2Gn"      "EEF2.R2Gn"     
## [17] "PRKCA.R2Gn"     "TGM2.R2Gn"      "SQSTM1.R2Gn"    "hsa-mir-1185-1"
## [21] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-1269"   "hsa-mir-134"   
## [25] "hsa-mir-137"    "hsa-mir-138-1"  "hsa-mir-146a"   "hsa-mir-153-1" 
## [29] "hsa-mir-200b"   "hsa-mir-217"    "hsa-mir-218-1"  "hsa-mir-3173"  
## [33] "hsa-mir-320c-1" "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [37] "hsa-mir-329-2"  "hsa-mir-3614"   "hsa-mir-3687"   "hsa-mir-370"   
## [41] "hsa-mir-376a-2" "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [45] "hsa-mir-380"    "hsa-mir-382"    "hsa-mir-3926-1" "hsa-mir-3940"  
## [49] "hsa-mir-409"    "hsa-mir-433"    "hsa-mir-466"    "hsa-mir-487a"  
## [53] "hsa-mir-489"    "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-510"   
## [57] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a"   "hsa-mir-541"   
## [61] "hsa-mir-552"    "hsa-mir-579"    "hsa-mir-582"    "hsa-mir-607"   
## [65] "hsa-mir-653"    "hsa-mir-654"    "hsa-mir-656"    "hsa-mir-665"   
## [69] "hsa-mir-668"    "hsa-mir-758"    "hsa-mir-770"   
## [1] "bicluster21"
##  [1] "RBM15.RPPA"     "PEA15.RPPA"     "EGFR.RPPA"      "FASN.RPPA"     
##  [5] "TFRC.RPPA"      "CDH2.R2Gn"      "PEA15.R2Gn"     "ADAR.R2Gn"     
##  [9] "SHC1.R2Gn"      "MYH9.R2Gn"      "SYP.R2Gn"       "hsa-mir-1193"  
## [13] "hsa-mir-124-1"  "hsa-mir-124-2"  "hsa-mir-124-3"  "hsa-mir-1258"  
## [17] "hsa-mir-1292"   "hsa-mir-1304"   "hsa-mir-141"    "hsa-mir-153-1" 
## [21] "hsa-mir-153-2"  "hsa-mir-206"    "hsa-mir-216a"   "hsa-mir-219-1" 
## [25] "hsa-mir-2277"   "hsa-mir-26a-1"  "hsa-mir-3191"   "hsa-mir-3199-1"
## [29] "hsa-mir-320c-2" "hsa-mir-329-2"  "hsa-mir-3682"   "hsa-mir-383"   
## [33] "hsa-mir-3909"   "hsa-mir-3923"   "hsa-mir-3926-1" "hsa-mir-3926-2"
## [37] "hsa-mir-3934"   "hsa-mir-466"    "hsa-mir-499"    "hsa-mir-506"   
## [41] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [45] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [49] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [53] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-516a-1" "hsa-mir-519a-2"
## [57] "hsa-mir-525"    "hsa-mir-548s"   "hsa-mir-548v"   "hsa-mir-550a-2"
## [61] "hsa-mir-552"    "hsa-mir-579"    "hsa-mir-580"    "hsa-mir-581"   
## [65] "hsa-mir-592"    "hsa-mir-605"    "hsa-mir-615"    "hsa-mir-624"   
## [69] "hsa-mir-765"    "hsa-mir-767"    "hsa-mir-9-3"   
## [1] "bicluster19"
##  [1] "IGFBP2.RPPA"    "ASNS.RPPA"      "EGFR.RPPA"      "INPP4B.RPPA"   
##  [5] "MYH11.RPPA"     "ERBB3.R2Gn"     "FN1.R2Gn"       "CDKN1A.R2Gn"   
##  [9] "CTNNB1.R2Gn"    "SHC1.R2Gn"      "PARK7.R2Gn"     "TGM2.R2Gn"     
## [13] "BCL2L1.R2Gn"    "TUBA1B.R2Gn"    "YWHAB.R2Gn"     "HSPA1A.R2Gn"   
## [17] "SQSTM1.R2Gn"    "hsa-mir-1197"   "hsa-mir-122"    "hsa-mir-1247"  
## [21] "hsa-mir-1255a"  "hsa-mir-1262"   "hsa-mir-1269"   "hsa-mir-1271"  
## [25] "hsa-mir-1292"   "hsa-mir-1293"   "hsa-mir-1305"   "hsa-mir-135a-2"
## [29] "hsa-mir-205"    "hsa-mir-206"    "hsa-mir-30c-1"  "hsa-mir-3144"  
## [33] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-3651"  
## [37] "hsa-mir-3655"   "hsa-mir-3682"   "hsa-mir-370"    "hsa-mir-380"   
## [41] "hsa-mir-382"    "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-3940"  
## [45] "hsa-mir-411"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"  
## [49] "hsa-mir-496"    "hsa-mir-499"    "hsa-mir-516a-1" "hsa-mir-516a-2"
## [53] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-518c"  
## [57] "hsa-mir-518f"   "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"  
## [61] "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-541"    "hsa-mir-543"   
## [65] "hsa-mir-551b"   "hsa-mir-577"    "hsa-mir-639"    "hsa-mir-655"   
## [69] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-889"   
## [1] "bicluster38"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "FASN.RPPA"      "PDCD4.RPPA"    
##  [5] "AR.RPPA"        "GAPDH.RPPA"     "MSH6.RPPA"      "MSH2.RPPA"     
##  [9] "ERBB2.R2Gn"     "KDR.R2Gn"       "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
## [13] "FASN.R2Gn"      "PRKCA.R2Gn"     "PIK3R1.R2Gn"    "GAPDH.R2Gn"    
## [17] "MYH9.R2Gn"      "COL6A1.R2Gn"    "PIK3R2.R2Gn"    "HSPA1A.R2Gn"   
## [21] "ERRFI1.R2Gn"    "PARP1.R2Gn"     "PREX1.R2Gn"     "CHGA.R2Gn"     
## [25] "hsa-let-7f-1"   "hsa-mir-1179"   "hsa-mir-1247"   "hsa-mir-1287"  
## [29] "hsa-mir-1293"   "hsa-mir-1305"   "hsa-mir-135a-1" "hsa-mir-135b"  
## [33] "hsa-mir-187"    "hsa-mir-194-1"  "hsa-mir-194-2"  "hsa-mir-200a"  
## [37] "hsa-mir-202"    "hsa-mir-204"    "hsa-mir-2114"   "hsa-mir-216b"  
## [41] "hsa-mir-224"    "hsa-mir-26a-1"  "hsa-mir-3130-1" "hsa-mir-3170"  
## [45] "hsa-mir-3173"   "hsa-mir-320c-2" "hsa-mir-329-2"  "hsa-mir-3652"  
## [49] "hsa-mir-3662"   "hsa-mir-3934"   "hsa-mir-429"    "hsa-mir-452"   
## [53] "hsa-mir-487a"   "hsa-mir-488"    "hsa-mir-499"    "hsa-mir-516a-1"
## [57] "hsa-mir-517a"   "hsa-mir-518c"   "hsa-mir-519a-2" "hsa-mir-548s"  
## [61] "hsa-mir-551b"   "hsa-mir-577"    "hsa-mir-605"    "hsa-mir-636"   
## [65] "hsa-mir-767"    "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-9-1"   
## [69] "hsa-mir-9-2"    "hsa-mir-9-3"    "hsa-mir-939"   
## [1] "bicluster16"
##  [1] "GATA3.RPPA"     "PDCD4.RPPA"     "PREX1.RPPA"     "ERBB3.R2Gn"    
##  [5] "IGFBP2.R2Gn"    "YWHAZ.R2Gn"     "SERPINE1.R2Gn"  "PRKCA.R2Gn"    
##  [9] "GAPDH.R2Gn"     "HSPA1A.R2Gn"    "ERRFI1.R2Gn"    "RBM3.R2Gn"     
## [13] "RPTOR.R2Gn"     "hsa-mir-105-1"  "hsa-mir-105-2"  "hsa-mir-1193"  
## [17] "hsa-mir-1197"   "hsa-mir-1224"   "hsa-mir-1226"   "hsa-mir-1228"  
## [21] "hsa-mir-1245"   "hsa-mir-1247"   "hsa-mir-1270-1" "hsa-mir-135a-1"
## [25] "hsa-mir-184"    "hsa-mir-187"    "hsa-mir-1909"   "hsa-mir-194-1" 
## [29] "hsa-mir-194-2"  "hsa-mir-199a-1" "hsa-mir-199a-2" "hsa-mir-200a"  
## [33] "hsa-mir-200b"   "hsa-mir-214"    "hsa-mir-215"    "hsa-mir-31"    
## [37] "hsa-mir-323b"   "hsa-mir-335"    "hsa-mir-3678"   "hsa-mir-3909"  
## [41] "hsa-mir-3922"   "hsa-mir-410"    "hsa-mir-412"    "hsa-mir-431"   
## [45] "hsa-mir-432"    "hsa-mir-4326"   "hsa-mir-433"    "hsa-mir-466"   
## [49] "hsa-mir-483"    "hsa-mir-487a"   "hsa-mir-488"    "hsa-mir-493"   
## [53] "hsa-mir-504"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-510"   
## [57] "hsa-mir-514-3"  "hsa-mir-541"    "hsa-mir-548q"   "hsa-mir-550a-2"
## [61] "hsa-mir-585"    "hsa-mir-607"    "hsa-mir-656"    "hsa-mir-668"   
## [65] "hsa-mir-7-2"    "hsa-mir-7-3"    "hsa-mir-765"    "hsa-mir-767"   
## [69] "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-937"   
## [1] "bicluster34"
##  [1] "RBM15.RPPA"     "PEA15.RPPA"     "FASN.RPPA"      "PDCD4.RPPA"    
##  [5] "MSH6.RPPA"      "TFRC.RPPA"      "MSH2.RPPA"      "DIRAS3.R2Gn"   
##  [9] "G6PD.R2Gn"      "ERBB3.R2Gn"     "RPS6KA1.R2Gn"   "IGF1R.R2Gn"    
## [13] "ADAR.R2Gn"      "EEF2.R2Gn"      "CTNNB1.R2Gn"    "SHC1.R2Gn"     
## [17] "TGM2.R2Gn"      "GAPDH.R2Gn"     "NRG1.R2Gn"      "CHGA.R2Gn"     
## [21] "hsa-mir-106a"   "hsa-mir-1185-1" "hsa-mir-124-1"  "hsa-mir-124-2" 
## [25] "hsa-mir-124-3"  "hsa-mir-1248"   "hsa-mir-1251"   "hsa-mir-1254"  
## [29] "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1274b" 
## [33] "hsa-mir-128-2"  "hsa-mir-135a-2" "hsa-mir-135b"   "hsa-mir-138-1" 
## [37] "hsa-mir-141"    "hsa-mir-1976"   "hsa-mir-200b"   "hsa-mir-218-1" 
## [41] "hsa-mir-218-2"  "hsa-mir-2277"   "hsa-mir-296"    "hsa-mir-3130-1"
## [45] "hsa-mir-3144"   "hsa-mir-320c-2" "hsa-mir-34b"    "hsa-mir-3614"  
## [49] "hsa-mir-3648"   "hsa-mir-3676"   "hsa-mir-3682"   "hsa-mir-3687"  
## [53] "hsa-mir-3690"   "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-485"   
## [57] "hsa-mir-487a"   "hsa-mir-504"    "hsa-mir-511-2"  "hsa-mir-513a-2"
## [61] "hsa-mir-516a-2" "hsa-mir-518b"   "hsa-mir-548q"   "hsa-mir-552"   
## [65] "hsa-mir-605"    "hsa-mir-655"    "hsa-mir-665"    "hsa-mir-675"   
## [69] "hsa-mir-887"    "hsa-mir-939"    "hsa-mir-940"   
## [1] "bicluster42"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "PEA15.RPPA"     "EGFR.RPPA"     
##  [5] "TSC1.RPPA"      "PDCD4.RPPA"     "ERCC1.RPPA"     "TFRC.RPPA"     
##  [9] "IGFBP2.R2Gn"    "CDH2.R2Gn"      "SERPINE1.R2Gn"  "CTNNB1.R2Gn"   
## [13] "RPS6.R2Gn"      "TGM2.R2Gn"      "CTNNA1.R2Gn"    "CCND1.R2Gn"    
## [17] "NOTCH3.R2Gn"    "PDK1.R2Gn"      "NDRG1.R2Gn"     "PIK3R2.R2Gn"   
## [21] "SYP.R2Gn"       "RPTOR.R2Gn"     "hsa-mir-122"    "hsa-mir-1226"  
## [25] "hsa-mir-1255a"  "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-129-1" 
## [29] "hsa-mir-129-2"  "hsa-mir-153-1"  "hsa-mir-153-2"  "hsa-mir-183"   
## [33] "hsa-mir-187"    "hsa-mir-1909"   "hsa-mir-2114"   "hsa-mir-216a"  
## [37] "hsa-mir-26a-1"  "hsa-mir-29a"    "hsa-mir-29b-1"  "hsa-mir-29b-2" 
## [41] "hsa-mir-3065"   "hsa-mir-3166"   "hsa-mir-3173"   "hsa-mir-320c-1"
## [45] "hsa-mir-320c-2" "hsa-mir-346"    "hsa-mir-363"    "hsa-mir-3651"  
## [49] "hsa-mir-3662"   "hsa-mir-3676"   "hsa-mir-3687"   "hsa-mir-3690"  
## [53] "hsa-mir-378c"   "hsa-mir-3922"   "hsa-mir-3934"   "hsa-mir-429"   
## [57] "hsa-mir-490"    "hsa-mir-510"    "hsa-mir-548j"   "hsa-mir-552"   
## [61] "hsa-mir-570"    "hsa-mir-642a"   "hsa-mir-643"    "hsa-mir-760"   
## [65] "hsa-mir-765"    "hsa-mir-766"    "hsa-mir-876"    "hsa-mir-885"   
## [69] "hsa-mir-935"    "hsa-mir-937"    "hsa-mir-95"    
## [1] "bicluster22"
##  [1] "G6PD.RPPA"      "GATA3.RPPA"     "ATM.RPPA"       "FASN.RPPA"     
##  [5] "AR.RPPA"        "MYH11.RPPA"     "ERBB3.R2Gn"     "PEA15.R2Gn"    
##  [9] "XRCC5.R2Gn"     "ADAR.R2Gn"      "EEF2.R2Gn"      "SERPINE1.R2Gn" 
## [13] "PCNA.R2Gn"      "CTNNB1.R2Gn"    "ANLN.R2Gn"      "SHC1.R2Gn"     
## [17] "TGM2.R2Gn"      "E2F1.R2Gn"      "GAPDH.R2Gn"     "TUBA1B.R2Gn"   
## [21] "MYH9.R2Gn"      "ERRFI1.R2Gn"    "hsa-mir-105-1"  "hsa-mir-105-2" 
## [25] "hsa-mir-1228"   "hsa-mir-1255a"  "hsa-mir-133b"   "hsa-mir-135a-2"
## [29] "hsa-mir-135b"   "hsa-mir-137"    "hsa-mir-187"    "hsa-mir-200a"  
## [33] "hsa-mir-200b"   "hsa-mir-205"    "hsa-mir-206"    "hsa-mir-216a"  
## [37] "hsa-mir-3166"   "hsa-mir-3191"   "hsa-mir-320c-2" "hsa-mir-3662"  
## [41] "hsa-mir-3678"   "hsa-mir-3682"   "hsa-mir-3922"   "hsa-mir-429"   
## [45] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-510"    "hsa-mir-516a-1"
## [49] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [53] "hsa-mir-518f"   "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"  
## [57] "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-548s"   "hsa-mir-570"   
## [61] "hsa-mir-579"    "hsa-mir-605"    "hsa-mir-607"    "hsa-mir-618"   
## [65] "hsa-mir-7-2"    "hsa-mir-708"    "hsa-mir-767"    "hsa-mir-891a"  
## [69] "hsa-mir-935"    "hsa-mir-939"    "hsa-mir-940"   
## [1] "bicluster25"
##  [1] "IGFBP2.RPPA"    "PTEN.RPPA"      "AR.RPPA"        "GAPDH.RPPA"    
##  [5] "KDR.R2Gn"       "IGFBP2.R2Gn"    "YWHAZ.R2Gn"     "ITGA2.R2Gn"    
##  [9] "PCNA.R2Gn"      "CTNNB1.R2Gn"    "PRRT2.R2Gn"     "PIK3R1.R2Gn"   
## [13] "BCL2L1.R2Gn"    "GAPDH.R2Gn"     "ANXA1.R2Gn"     "ERRFI1.R2Gn"   
## [17] "RET.R2Gn"       "CDKN2A.R2Gn"    "hsa-mir-1229"   "hsa-mir-1258"  
## [21] "hsa-mir-1262"   "hsa-mir-1269"   "hsa-mir-182"    "hsa-mir-183"   
## [25] "hsa-mir-190b"   "hsa-mir-196a-2" "hsa-mir-196b"   "hsa-mir-205"   
## [29] "hsa-mir-296"    "hsa-mir-301b"   "hsa-mir-3166"   "hsa-mir-3170"  
## [33] "hsa-mir-3173"   "hsa-mir-3187"   "hsa-mir-320c-1" "hsa-mir-329-2" 
## [37] "hsa-mir-3610"   "hsa-mir-3620"   "hsa-mir-3682"   "hsa-mir-3687"  
## [41] "hsa-mir-372"    "hsa-mir-3917"   "hsa-mir-3928"   "hsa-mir-3934"  
## [45] "hsa-mir-3940"   "hsa-mir-483"    "hsa-mir-491"    "hsa-mir-494"   
## [49] "hsa-mir-503"    "hsa-mir-516a-1" "hsa-mir-517a"   "hsa-mir-518c"  
## [53] "hsa-mir-548q"   "hsa-mir-551b"   "hsa-mir-580"    "hsa-mir-615"   
## [57] "hsa-mir-624"    "hsa-mir-636"    "hsa-mir-642a"   "hsa-mir-655"   
## [61] "hsa-mir-656"    "hsa-mir-663"    "hsa-mir-675"    "hsa-mir-7-3"   
## [65] "hsa-mir-765"    "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-891a"  
## [69] "hsa-mir-937"    "hsa-mir-939"    "hsa-mir-96"    
## [1] "bicluster10"
##  [1] "PEA15.RPPA"     "ATM.RPPA"       "EGFR.RPPA"      "FASN.RPPA"     
##  [5] "TSC1.RPPA"      "GAPDH.RPPA"     "TFRC.RPPA"      "MAPK14.R2Gn"   
##  [9] "CDH2.R2Gn"      "MAPK1.R2Gn"     "XRCC5.R2Gn"     "FASN.R2Gn"     
## [13] "EEF2.R2Gn"      "SERPINE1.R2Gn"  "CTNNB1.R2Gn"    "ACACA.R2Gn"    
## [17] "TGM2.R2Gn"      "EEF2K.R2Gn"     "PIK3R1.R2Gn"    "PRDX1.R2Gn"    
## [21] "GAPDH.R2Gn"     "TUBA1B.R2Gn"    "MYH11.R2Gn"     "TFRC.R2Gn"     
## [25] "PARP1.R2Gn"     "CHGA.R2Gn"      "hsa-mir-1224"   "hsa-mir-1228"  
## [29] "hsa-mir-1269"   "hsa-mir-1274b"  "hsa-mir-129-2"  "hsa-mir-135b"  
## [33] "hsa-mir-139"    "hsa-mir-18a"    "hsa-mir-203"    "hsa-mir-205"   
## [37] "hsa-mir-2114"   "hsa-mir-218-1"  "hsa-mir-3173"   "hsa-mir-3190"  
## [41] "hsa-mir-3651"   "hsa-mir-3655"   "hsa-mir-3922"   "hsa-mir-3923"  
## [45] "hsa-mir-3926-2" "hsa-mir-3940"   "hsa-mir-4326"   "hsa-mir-490"   
## [49] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [53] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [57] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [61] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-519a-2" "hsa-mir-525"   
## [65] "hsa-mir-585"    "hsa-mir-618"    "hsa-mir-659"    "hsa-mir-665"   
## [69] "hsa-mir-670"    "hsa-mir-767"    "hsa-mir-876"   
## [1] "bicluster2"
##  [1] "GATA3.RPPA"     "TTF1.RPPA"      "MYH11.RPPA"     "TFRC.RPPA"     
##  [5] "DIRAS3.R2Gn"    "SRC.R2Gn"       "CTNNB1.R2Gn"    "PIK3R1.R2Gn"   
##  [9] "BCL2L1.R2Gn"    "TYMS.R2Gn"      "TFRC.R2Gn"      "HSPA1A.R2Gn"   
## [13] "RET.R2Gn"       "SQSTM1.R2Gn"    "hsa-let-7f-1"   "hsa-mir-1-2"   
## [17] "hsa-mir-1185-1" "hsa-mir-1197"   "hsa-mir-1228"   "hsa-mir-124-1" 
## [21] "hsa-mir-124-2"  "hsa-mir-124-3"  "hsa-mir-1251"   "hsa-mir-1270-1"
## [25] "hsa-mir-134"    "hsa-mir-154"    "hsa-mir-299"    "hsa-mir-301b"  
## [29] "hsa-mir-3193"   "hsa-mir-3199-1" "hsa-mir-323"    "hsa-mir-323b"  
## [33] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-335"    "hsa-mir-346"   
## [37] "hsa-mir-3610"   "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [41] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-382"   
## [45] "hsa-mir-3912"   "hsa-mir-3922"   "hsa-mir-411"    "hsa-mir-485"   
## [49] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-516a-1" "hsa-mir-519a-2"
## [53] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-561"    "hsa-mir-570"   
## [57] "hsa-mir-580"    "hsa-mir-585"    "hsa-mir-655"    "hsa-mir-656"   
## [61] "hsa-mir-663"    "hsa-mir-668"    "hsa-mir-7-2"    "hsa-mir-758"   
## [65] "hsa-mir-765"    "hsa-mir-767"    "hsa-mir-770"    "hsa-mir-873"   
## [69] "hsa-mir-876"    "hsa-mir-937"    "hsa-mir-939"   
## [1] "bicluster13"
##  [1] "ASNS.RPPA"      "GATA3.RPPA"     "ATM.RPPA"       "GAPDH.RPPA"    
##  [5] "FN1.R2Gn"       "AKT2.R2Gn"      "EEF2.R2Gn"      "ACVRL1.R2Gn"   
##  [9] "RPS6.R2Gn"      "PDCD4.R2Gn"     "JUN.R2Gn"       "STAT3.R2Gn"    
## [13] "FOXO3.R2Gn"     "PARK7.R2Gn"     "RAB11A.R2Gn"    "ACACB.R2Gn"    
## [17] "CCND1.R2Gn"     "COL6A1.R2Gn"    "ANXA1.R2Gn"     "TFRC.R2Gn"     
## [21] "HSPA1A.R2Gn"    "SYP.R2Gn"       "hsa-mir-105-2"  "hsa-mir-1193"  
## [25] "hsa-mir-124-2"  "hsa-mir-124-3"  "hsa-mir-125b-1" "hsa-mir-1262"  
## [29] "hsa-mir-146b"   "hsa-mir-184"    "hsa-mir-196a-2" "hsa-mir-196b"  
## [33] "hsa-mir-202"    "hsa-mir-205"    "hsa-mir-206"    "hsa-mir-21"    
## [37] "hsa-mir-2355"   "hsa-mir-31"     "hsa-mir-3190"   "hsa-mir-320c-2"
## [41] "hsa-mir-346"    "hsa-mir-34b"    "hsa-mir-3676"   "hsa-mir-3678"  
## [45] "hsa-mir-3682"   "hsa-mir-372"    "hsa-mir-380"    "hsa-mir-383"   
## [49] "hsa-mir-412"    "hsa-mir-466"    "hsa-mir-488"    "hsa-mir-490"   
## [53] "hsa-mir-510"    "hsa-mir-511-1"  "hsa-mir-511-2"  "hsa-mir-516a-2"
## [57] "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-518f"   "hsa-mir-519a-1"
## [61] "hsa-mir-519a-2" "hsa-mir-544"    "hsa-mir-548b"   "hsa-mir-582"   
## [65] "hsa-mir-592"    "hsa-mir-605"    "hsa-mir-618"    "hsa-mir-653"   
## [69] "hsa-mir-7-2"    "hsa-mir-891a"   "hsa-mir-937"   
## [1] "bicluster29"
##  [1] "ASNS.RPPA"      "PTEN.RPPA"      "PEA15.RPPA"     "EGFR.RPPA"     
##  [5] "FASN.RPPA"      "ACVRL1.RPPA"    "TTF1.RPPA"      "CDK1.RPPA"     
##  [9] "TFRC.RPPA"      "MSH2.RPPA"      "PREX1.RPPA"     "ERBB3.R2Gn"    
## [13] "CDH2.R2Gn"      "GATA3.R2Gn"     "PEA15.R2Gn"     "MAPK1.R2Gn"    
## [17] "ITGA2.R2Gn"     "ADAR.R2Gn"      "FASN.R2Gn"      "YWHAE.R2Gn"    
## [21] "CTNNB1.R2Gn"    "PRKCA.R2Gn"     "PDCD4.R2Gn"     "CCND1.R2Gn"    
## [25] "KRAS.R2Gn"      "COL6A1.R2Gn"    "PIK3R2.R2Gn"    "HSPA1A.R2Gn"   
## [29] "PXN.R2Gn"       "PREX1.R2Gn"     "hsa-mir-100"    "hsa-mir-1185-1"
## [33] "hsa-mir-1248"   "hsa-mir-1258"   "hsa-mir-1262"   "hsa-mir-1270-2"
## [37] "hsa-mir-135a-1" "hsa-mir-139"    "hsa-mir-182"    "hsa-mir-183"   
## [41] "hsa-mir-187"    "hsa-mir-196b"   "hsa-mir-206"    "hsa-mir-3144"  
## [45] "hsa-mir-3166"   "hsa-mir-3170"   "hsa-mir-3199-1" "hsa-mir-320c-2"
## [49] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-335"    "hsa-mir-338"   
## [53] "hsa-mir-3619"   "hsa-mir-3678"   "hsa-mir-3682"   "hsa-mir-424"   
## [57] "hsa-mir-433"    "hsa-mir-483"    "hsa-mir-487a"   "hsa-mir-488"   
## [61] "hsa-mir-517a"   "hsa-mir-525"    "hsa-mir-541"    "hsa-mir-548s"  
## [65] "hsa-mir-592"    "hsa-mir-668"    "hsa-mir-7-3"    "hsa-mir-876"   
## [69] "hsa-mir-939"    "hsa-mir-940"    "hsa-mir-96"    
## [1] "bicluster7"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "ASNS.RPPA"      "RBM15.RPPA"    
##  [5] "GATA3.RPPA"     "ATM.RPPA"       "EGFR.RPPA"      "PCNA.RPPA"     
##  [9] "GAPDH.RPPA"     "PDK1.RPPA"      "TFRC.RPPA"      "G6PD.R2Gn"     
## [13] "KDR.R2Gn"       "ERBB3.R2Gn"     "FN1.R2Gn"       "EEF2.R2Gn"     
## [17] "SERPINE1.R2Gn"  "CCND1.R2Gn"     "GAPDH.R2Gn"     "NOTCH3.R2Gn"   
## [21] "SYP.R2Gn"       "PARP1.R2Gn"     "IDH3A.R2Gn"     "hsa-mir-105-1" 
## [25] "hsa-mir-105-2"  "hsa-mir-1185-1" "hsa-mir-1226"   "hsa-mir-1254"  
## [29] "hsa-mir-1293"   "hsa-mir-141"    "hsa-mir-149"    "hsa-mir-184"   
## [33] "hsa-mir-203"    "hsa-mir-2114"   "hsa-mir-218-1"  "hsa-mir-30c-1" 
## [37] "hsa-mir-3130-1" "hsa-mir-3166"   "hsa-mir-3191"   "hsa-mir-345"   
## [41] "hsa-mir-3647"   "hsa-mir-3662"   "hsa-mir-3678"   "hsa-mir-377"   
## [45] "hsa-mir-3909"   "hsa-mir-3922"   "hsa-mir-3926-1" "hsa-mir-450a-1"
## [49] "hsa-mir-485"    "hsa-mir-494"    "hsa-mir-507"    "hsa-mir-510"   
## [53] "hsa-mir-511-2"  "hsa-mir-513a-2" "hsa-mir-514-1"  "hsa-mir-514-2" 
## [57] "hsa-mir-514-3"  "hsa-mir-516b-1" "hsa-mir-518b"   "hsa-mir-543"   
## [61] "hsa-mir-548j"   "hsa-mir-548q"   "hsa-mir-548v"   "hsa-mir-550a-2"
## [65] "hsa-mir-582"    "hsa-mir-585"    "hsa-mir-627"    "hsa-mir-643"   
## [69] "hsa-mir-655"    "hsa-mir-891a"   "hsa-mir-937"   
## [1] "bicluster31"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "ATM.RPPA"       "EGFR.RPPA"     
##  [5] "TSC1.RPPA"      "GAPDH.RPPA"     "MYH11.RPPA"     "TFRC.RPPA"     
##  [9] "ERBB3.R2Gn"     "CDKN1A.R2Gn"    "YWHAZ.R2Gn"     "YWHAE.R2Gn"    
## [13] "CTNNB1.R2Gn"    "YBX1.R2Gn"      "RPS6.R2Gn"      "PDCD4.R2Gn"    
## [17] "STMN1.R2Gn"     "TGM2.R2Gn"      "PIK3R1.R2Gn"    "GAPDH.R2Gn"    
## [21] "HSPA1A.R2Gn"    "PXN.R2Gn"       "RET.R2Gn"       "CHGA.R2Gn"     
## [25] "hsa-mir-105-2"  "hsa-mir-1185-1" "hsa-mir-1193"   "hsa-mir-1249"  
## [29] "hsa-mir-1293"   "hsa-mir-135a-1" "hsa-mir-135a-2" "hsa-mir-200a"  
## [33] "hsa-mir-200b"   "hsa-mir-210"    "hsa-mir-218-1"  "hsa-mir-3130-1"
## [37] "hsa-mir-3173"   "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-33b"   
## [41] "hsa-mir-3610"   "hsa-mir-3651"   "hsa-mir-3652"   "hsa-mir-3682"  
## [45] "hsa-mir-3687"   "hsa-mir-372"    "hsa-mir-376a-1" "hsa-mir-380"   
## [49] "hsa-mir-3909"   "hsa-mir-3922"   "hsa-mir-3928"   "hsa-mir-3934"  
## [53] "hsa-mir-3940"   "hsa-mir-484"    "hsa-mir-499"    "hsa-mir-516a-1"
## [57] "hsa-mir-518c"   "hsa-mir-525"    "hsa-mir-544"    "hsa-mir-545"   
## [61] "hsa-mir-550a-2" "hsa-mir-579"    "hsa-mir-580"    "hsa-mir-581"   
## [65] "hsa-mir-585"    "hsa-mir-605"    "hsa-mir-624"    "hsa-mir-656"   
## [69] "hsa-mir-7-2"    "hsa-mir-7-3"    "hsa-mir-767"   
## [1] "bicluster43"
##  [1] "PTEN.RPPA"      "PEA15.RPPA"     "FASN.RPPA"      "PDCD4.RPPA"    
##  [5] "TTF1.RPPA"      "AR.RPPA"        "GAPDH.RPPA"     "MSH6.RPPA"     
##  [9] "MSH2.RPPA"      "KDR.R2Gn"       "ERBB3.R2Gn"     "FN1.R2Gn"      
## [13] "AKT2.R2Gn"      "CDKN1A.R2Gn"    "GATA3.R2Gn"     "ADAR.R2Gn"     
## [17] "FASN.R2Gn"      "EEF2.R2Gn"      "SERPINE1.R2Gn"  "BCL2L1.R2Gn"   
## [21] "PXN.R2Gn"       "RET.R2Gn"       "hsa-mir-1269"   "hsa-mir-129-1" 
## [25] "hsa-mir-129-2"  "hsa-mir-1291"   "hsa-mir-135a-2" "hsa-mir-138-2" 
## [29] "hsa-mir-184"    "hsa-mir-190b"   "hsa-mir-196a-2" "hsa-mir-200a"  
## [33] "hsa-mir-200b"   "hsa-mir-2114"   "hsa-mir-216a"   "hsa-mir-217"   
## [37] "hsa-mir-31"     "hsa-mir-3170"   "hsa-mir-3191"   "hsa-mir-3193"  
## [41] "hsa-mir-320c-2" "hsa-mir-3610"   "hsa-mir-3619"   "hsa-mir-3655"  
## [45] "hsa-mir-3687"   "hsa-mir-3690"   "hsa-mir-3909"   "hsa-mir-3923"  
## [49] "hsa-mir-412"    "hsa-mir-4326"   "hsa-mir-466"    "hsa-mir-488"   
## [53] "hsa-mir-499"    "hsa-mir-504"    "hsa-mir-510"    "hsa-mir-517a"  
## [57] "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-548q"   "hsa-mir-552"   
## [61] "hsa-mir-585"    "hsa-mir-607"    "hsa-mir-615"    "hsa-mir-629"   
## [65] "hsa-mir-636"    "hsa-mir-670"    "hsa-mir-7-2"    "hsa-mir-767"   
## [69] "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-95"    
## [1] "bicluster27"
##  [1] "PTEN.RPPA"      "GATA3.RPPA"     "PEA15.RPPA"     "ACVRL1.RPPA"   
##  [5] "GAPDH.RPPA"     "NF2.RPPA"       "ERBB3.R2Gn"     "FN1.R2Gn"      
##  [9] "CDH2.R2Gn"      "BECN1.R2Gn"     "GATA3.R2Gn"     "SERPINE1.R2Gn" 
## [13] "CTNNB1.R2Gn"    "MAPT.R2Gn"      "STMN1.R2Gn"     "CCND1.R2Gn"    
## [17] "PDK1.R2Gn"      "NDRG1.R2Gn"     "HSPA1A.R2Gn"    "ERRFI1.R2Gn"   
## [21] "SYP.R2Gn"       "PARP1.R2Gn"     "CHGA.R2Gn"      "IDH3A.R2Gn"    
## [25] "hsa-mir-105-2"  "hsa-mir-1245"   "hsa-mir-1255a"  "hsa-mir-1270-1"
## [29] "hsa-mir-1270-2" "hsa-mir-1296"   "hsa-mir-133b"   "hsa-mir-141"   
## [33] "hsa-mir-184"    "hsa-mir-2114"   "hsa-mir-216b"   "hsa-mir-296"   
## [37] "hsa-mir-29c"    "hsa-mir-329-2"  "hsa-mir-3923"   "hsa-mir-3928"  
## [41] "hsa-mir-3934"   "hsa-mir-483"    "hsa-mir-499"    "hsa-mir-506"   
## [45] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [49] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-511-1"  "hsa-mir-511-2" 
## [53] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [57] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [61] "hsa-mir-516a-1" "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-561"   
## [65] "hsa-mir-570"    "hsa-mir-579"    "hsa-mir-580"    "hsa-mir-618"   
## [69] "hsa-mir-675"    "hsa-mir-767"    "hsa-mir-891a"  
## [1] "bicluster20"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "AR.RPPA"        "MSH6.RPPA"     
##  [5] "MSH2.RPPA"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [9] "AKT3.R2Gn"      "RAD51.R2Gn"     "BECN1.R2Gn"     "CDKN1A.R2Gn"   
## [13] "EIF4G1.R2Gn"    "BIRC2.R2Gn"     "ADAR.R2Gn"      "RPS6.R2Gn"     
## [17] "ANLN.R2Gn"      "STMN1.R2Gn"     "TGM2.R2Gn"      "CDK1.R2Gn"     
## [21] "E2F1.R2Gn"      "CTNNA1.R2Gn"    "RAD50.R2Gn"     "MYC.R2Gn"      
## [25] "CAV1.R2Gn"      "TYMS.R2Gn"      "CCNB1.R2Gn"     "TUBA1B.R2Gn"   
## [29] "FOXM1.R2Gn"     "COL6A1.R2Gn"    "YWHAB.R2Gn"     "EZH2.R2Gn"     
## [33] "BID.R2Gn"       "TFRC.R2Gn"      "CCNE2.R2Gn"     "SYK.R2Gn"      
## [37] "CDKN2A.R2Gn"    "hsa-mir-1245"   "hsa-mir-1247"   "hsa-mir-1262"  
## [41] "hsa-mir-135a-1" "hsa-mir-135a-2" "hsa-mir-135b"   "hsa-mir-138-1" 
## [45] "hsa-mir-138-2"  "hsa-mir-187"    "hsa-mir-200a"   "hsa-mir-200b"  
## [49] "hsa-mir-202"    "hsa-mir-216a"   "hsa-mir-26a-1"  "hsa-mir-29c"   
## [53] "hsa-mir-3130-1" "hsa-mir-3144"   "hsa-mir-3170"   "hsa-mir-3190"  
## [57] "hsa-mir-3191"   "hsa-mir-3199-1" "hsa-mir-372"    "hsa-mir-3923"  
## [61] "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-466"    "hsa-mir-499"   
## [65] "hsa-mir-507"    "hsa-mir-516b-1" "hsa-mir-548b"   "hsa-mir-592"   
## [69] "hsa-mir-639"    "hsa-mir-765"    "hsa-mir-876"   
## [1] "bicluster37"
##  [1] "G6PD.RPPA"      "ATM.RPPA"       "FASN.RPPA"      "TTF1.RPPA"     
##  [5] "VHL.RPPA"       "GAPDH.RPPA"     "MSH6.RPPA"      "PREX1.RPPA"    
##  [9] "DIRAS3.R2Gn"    "ADAR.R2Gn"      "FASN.R2Gn"      "CTNNB1.R2Gn"   
## [13] "RPS6.R2Gn"      "PDCD4.R2Gn"     "FOXO3.R2Gn"     "GAPDH.R2Gn"    
## [17] "COL6A1.R2Gn"    "NDRG1.R2Gn"     "RBM3.R2Gn"      "SQSTM1.R2Gn"   
## [21] "hsa-mir-105-2"  "hsa-mir-1247"   "hsa-mir-1255a"  "hsa-mir-129-1" 
## [25] "hsa-mir-1292"   "hsa-mir-137"    "hsa-mir-138-2"  "hsa-mir-146a"  
## [29] "hsa-mir-150"    "hsa-mir-196a-2" "hsa-mir-210"    "hsa-mir-216a"  
## [33] "hsa-mir-218-1"  "hsa-mir-3190"   "hsa-mir-3191"   "hsa-mir-3199-2"
## [37] "hsa-mir-329-2"  "hsa-mir-3620"   "hsa-mir-3662"   "hsa-mir-3687"  
## [41] "hsa-mir-3922"   "hsa-mir-3934"   "hsa-mir-4326"   "hsa-mir-488"   
## [45] "hsa-mir-489"    "hsa-mir-499"    "hsa-mir-504"    "hsa-mir-506"   
## [49] "hsa-mir-507"    "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [53] "hsa-mir-513b"   "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518c"  
## [57] "hsa-mir-519a-2" "hsa-mir-548q"   "hsa-mir-548s"   "hsa-mir-584"   
## [61] "hsa-mir-605"    "hsa-mir-615"    "hsa-mir-653"    "hsa-mir-656"   
## [65] "hsa-mir-675"    "hsa-mir-760"    "hsa-mir-770"    "hsa-mir-873"   
## [69] "hsa-mir-876"    "hsa-mir-9-1"    "hsa-mir-9-2"   
## [1] "bicluster5"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "ASNS.RPPA"      "RBM15.RPPA"    
##  [5] "PEA15.RPPA"     "ATM.RPPA"       "EGFR.RPPA"      "FASN.RPPA"     
##  [9] "TSC1.RPPA"      "GAPDH.RPPA"     "TFRC.RPPA"      "KDR.R2Gn"      
## [13] "IGFBP2.R2Gn"    "CDKN1A.R2Gn"    "PEA15.R2Gn"     "ADAR.R2Gn"     
## [17] "EEF2.R2Gn"      "RPS6.R2Gn"      "SHC1.R2Gn"      "GAPDH.R2Gn"    
## [21] "COL6A1.R2Gn"    "ANXA1.R2Gn"     "TFRC.R2Gn"      "HSPA1A.R2Gn"   
## [25] "ERRFI1.R2Gn"    "RBM3.R2Gn"      "SNAI2.R2Gn"     "hsa-mir-1179"  
## [29] "hsa-mir-1255a"  "hsa-mir-1305"   "hsa-mir-130a"   "hsa-mir-138-1" 
## [33] "hsa-mir-184"    "hsa-mir-200a"   "hsa-mir-200b"   "hsa-mir-202"   
## [37] "hsa-mir-205"    "hsa-mir-206"    "hsa-mir-216b"   "hsa-mir-217"   
## [41] "hsa-mir-218-1"  "hsa-mir-218-2"  "hsa-mir-219-1"  "hsa-mir-26a-1" 
## [45] "hsa-mir-27b"    "hsa-mir-296"    "hsa-mir-3173"   "hsa-mir-3190"  
## [49] "hsa-mir-3193"   "hsa-mir-3199-1" "hsa-mir-34b"    "hsa-mir-3610"  
## [53] "hsa-mir-3655"   "hsa-mir-3676"   "hsa-mir-3687"   "hsa-mir-3909"  
## [57] "hsa-mir-3917"   "hsa-mir-3923"   "hsa-mir-3926-1" "hsa-mir-3940"  
## [61] "hsa-mir-429"    "hsa-mir-454"    "hsa-mir-504"    "hsa-mir-518f"  
## [65] "hsa-mir-544"    "hsa-mir-548q"   "hsa-mir-552"    "hsa-mir-580"   
## [69] "hsa-mir-615"    "hsa-mir-636"    "hsa-mir-670"   
## [1] "bicluster28"
##  [1] "GATA3.RPPA"     "TFRC.RPPA"      "G6PD.R2Gn"      "ERBB3.R2Gn"    
##  [5] "IGFBP2.R2Gn"    "FN1.R2Gn"       "CCND1.R2Gn"     "BCL2L1.R2Gn"   
##  [9] "GAPDH.R2Gn"     "MYH9.R2Gn"      "TFRC.R2Gn"      "HSPA1A.R2Gn"   
## [13] "ERRFI1.R2Gn"    "PARP1.R2Gn"     "BAD.R2Gn"       "hsa-mir-1185-1"
## [17] "hsa-mir-1193"   "hsa-mir-1197"   "hsa-mir-1224"   "hsa-mir-1249"  
## [21] "hsa-mir-1254"   "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-1270-2"
## [25] "hsa-mir-1274b"  "hsa-mir-1292"   "hsa-mir-135a-1" "hsa-mir-137"   
## [29] "hsa-mir-138-1"  "hsa-mir-138-2"  "hsa-mir-139"    "hsa-mir-141"   
## [33] "hsa-mir-296"    "hsa-mir-31"     "hsa-mir-3173"   "hsa-mir-3190"  
## [37] "hsa-mir-320c-1" "hsa-mir-329-1"  "hsa-mir-338"    "hsa-mir-346"   
## [41] "hsa-mir-3610"   "hsa-mir-3687"   "hsa-mir-376a-2" "hsa-mir-380"   
## [45] "hsa-mir-3926-1" "hsa-mir-3940"   "hsa-mir-411"    "hsa-mir-429"   
## [49] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-466"    "hsa-mir-485"   
## [53] "hsa-mir-488"    "hsa-mir-489"    "hsa-mir-490"    "hsa-mir-493"   
## [57] "hsa-mir-499"    "hsa-mir-525"    "hsa-mir-541"    "hsa-mir-543"   
## [61] "hsa-mir-580"    "hsa-mir-607"    "hsa-mir-615"    "hsa-mir-665"   
## [65] "hsa-mir-670"    "hsa-mir-760"    "hsa-mir-770"    "hsa-mir-885"   
## [69] "hsa-mir-9-3"    "hsa-mir-939"    "hsa-mir-99b"   
## [1] "bicluster9"
##  [1] "G6PD.RPPA"      "ASNS.RPPA"      "GATA3.RPPA"     "EGFR.RPPA"     
##  [5] "INPP4B.RPPA"    "TTF1.RPPA"      "VHL.RPPA"       "MYH11.RPPA"    
##  [9] "NF2.RPPA"       "TFRC.RPPA"      "G6PD.R2Gn"      "FN1.R2Gn"      
## [13] "CDH2.R2Gn"      "FOXO3.R2Gn"     "TGM2.R2Gn"      "PRRT2.R2Gn"    
## [17] "BCL2L1.R2Gn"    "MYH9.R2Gn"      "TFRC.R2Gn"      "HSPA1A.R2Gn"   
## [21] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1228"  
## [25] "hsa-mir-1247"   "hsa-mir-1269"   "hsa-mir-1271"   "hsa-mir-1304"  
## [29] "hsa-mir-134"    "hsa-mir-138-1"  "hsa-mir-141"    "hsa-mir-154"   
## [33] "hsa-mir-206"    "hsa-mir-2277"   "hsa-mir-301b"   "hsa-mir-31"    
## [37] "hsa-mir-320c-2" "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [41] "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-3652"   "hsa-mir-370"   
## [45] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-377"    "hsa-mir-3917"  
## [49] "hsa-mir-3926-2" "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-485"   
## [53] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-499"    "hsa-mir-516a-1"
## [57] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518c"   "hsa-mir-520a"  
## [61] "hsa-mir-525"    "hsa-mir-548v"   "hsa-mir-577"    "hsa-mir-607"   
## [65] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"   
## [69] "hsa-mir-670"    "hsa-mir-7-2"    "hsa-mir-770"   
## [1] "bicluster12"
##  [1] "IGFBP2.RPPA"    "TTF1.RPPA"      "GAPDH.RPPA"     "MSH6.RPPA"     
##  [5] "MYH11.RPPA"     "TFRC.RPPA"      "MSH2.RPPA"      "ERBB3.R2Gn"    
##  [9] "IGFBP2.R2Gn"    "CDKN1A.R2Gn"    "CCNE1.R2Gn"     "SERPINE1.R2Gn" 
## [13] "PDCD4.R2Gn"     "STMN1.R2Gn"     "HSPA1A.R2Gn"    "RBM3.R2Gn"     
## [17] "SNAI2.R2Gn"     "SQSTM1.R2Gn"    "hsa-mir-105-1"  "hsa-mir-1185-1"
## [21] "hsa-mir-1226"   "hsa-mir-1249"   "hsa-mir-1255a"  "hsa-mir-1262"  
## [25] "hsa-mir-1269"   "hsa-mir-129-2"  "hsa-mir-1292"   "hsa-mir-1293"  
## [29] "hsa-mir-196a-2" "hsa-mir-200a"   "hsa-mir-26a-1"  "hsa-mir-29c"   
## [33] "hsa-mir-31"     "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-34a"   
## [37] "hsa-mir-34b"    "hsa-mir-3655"   "hsa-mir-3677"   "hsa-mir-3687"  
## [41] "hsa-mir-377"    "hsa-mir-3923"   "hsa-mir-3934"   "hsa-mir-411"   
## [45] "hsa-mir-429"    "hsa-mir-4326"   "hsa-mir-483"    "hsa-mir-487a"  
## [49] "hsa-mir-489"    "hsa-mir-494"    "hsa-mir-510"    "hsa-mir-511-1" 
## [53] "hsa-mir-548q"   "hsa-mir-552"    "hsa-mir-561"    "hsa-mir-579"   
## [57] "hsa-mir-615"    "hsa-mir-624"    "hsa-mir-655"    "hsa-mir-656"   
## [61] "hsa-mir-663"    "hsa-mir-668"    "hsa-mir-670"    "hsa-mir-675"   
## [65] "hsa-mir-765"    "hsa-mir-767"    "hsa-mir-891a"   "hsa-mir-9-1"   
## [69] "hsa-mir-9-2"    "hsa-mir-9-3"    "hsa-mir-937"   
## [1] "bicluster1"
##  [1] "G6PD.RPPA"      "BRCA2.RPPA"     "FASN.RPPA"      "ACVRL1.RPPA"   
##  [5] "GAPDH.RPPA"     "TFRC.RPPA"      "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [9] "NFE2L2.R2Gn"    "PRKCA.R2Gn"     "PDCD4.R2Gn"     "GAPDH.R2Gn"    
## [13] "PREX1.R2Gn"     "hsa-mir-105-1"  "hsa-mir-106a"   "hsa-mir-1193"  
## [17] "hsa-mir-1228"   "hsa-mir-124-3"  "hsa-mir-1245"   "hsa-mir-1269"  
## [21] "hsa-mir-1270-2" "hsa-mir-1271"   "hsa-mir-1274b"  "hsa-mir-1292"  
## [25] "hsa-mir-135a-1" "hsa-mir-135a-2" "hsa-mir-139"    "hsa-mir-144"   
## [29] "hsa-mir-187"    "hsa-mir-215"    "hsa-mir-216b"   "hsa-mir-24-2"  
## [33] "hsa-mir-26a-1"  "hsa-mir-296"    "hsa-mir-30c-1"  "hsa-mir-3130-1"
## [37] "hsa-mir-3173"   "hsa-mir-320c-1" "hsa-mir-329-1"  "hsa-mir-346"   
## [41] "hsa-mir-34b"    "hsa-mir-3614"   "hsa-mir-3615"   "hsa-mir-3619"  
## [45] "hsa-mir-3690"   "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-380"   
## [49] "hsa-mir-3912"   "hsa-mir-433"    "hsa-mir-451"    "hsa-mir-485"   
## [53] "hsa-mir-511-1"  "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-520a"  
## [57] "hsa-mir-525"    "hsa-mir-541"    "hsa-mir-545"    "hsa-mir-548s"  
## [61] "hsa-mir-570"    "hsa-mir-580"    "hsa-mir-592"    "hsa-mir-605"   
## [65] "hsa-mir-607"    "hsa-mir-618"    "hsa-mir-636"    "hsa-mir-639"   
## [69] "hsa-mir-655"    "hsa-mir-765"    "hsa-mir-770"   
## [1] "bicluster23"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "PTEN.RPPA"      "EGFR.RPPA"     
##  [5] "FASN.RPPA"      "TTF1.RPPA"      "IRS1.RPPA"      "MYH11.RPPA"    
##  [9] "PDK1.RPPA"      "ERCC1.RPPA"     "YAP1.R2Gn"      "FN1.R2Gn"      
## [13] "SRC.R2Gn"       "AKT1.R2Gn"      "PEA15.R2Gn"     "ITGA2.R2Gn"    
## [17] "ADAR.R2Gn"      "EGFR.R2Gn"      "FASN.R2Gn"      "SHC1.R2Gn"     
## [21] "FOXO3.R2Gn"     "PARK7.R2Gn"     "IRS1.R2Gn"      "PIK3R1.R2Gn"   
## [25] "TUBA1B.R2Gn"    "ERRFI1.R2Gn"    "SYP.R2Gn"       "RPTOR.R2Gn"    
## [29] "ANXA7.R2Gn"     "CHGA.R2Gn"      "hsa-mir-1179"   "hsa-mir-1251"  
## [33] "hsa-mir-129-1"  "hsa-mir-135a-1" "hsa-mir-138-2"  "hsa-mir-187"   
## [37] "hsa-mir-196a-1" "hsa-mir-196a-2" "hsa-mir-219-1"  "hsa-mir-2277"  
## [41] "hsa-mir-26a-1"  "hsa-mir-301b"   "hsa-mir-30c-1"  "hsa-mir-3173"  
## [45] "hsa-mir-3190"   "hsa-mir-320c-2" "hsa-mir-3610"   "hsa-mir-3651"  
## [49] "hsa-mir-3652"   "hsa-mir-3655"   "hsa-mir-3676"   "hsa-mir-3687"  
## [53] "hsa-mir-3909"   "hsa-mir-3926-1" "hsa-mir-429"    "hsa-mir-516a-1"
## [57] "hsa-mir-548s"   "hsa-mir-548v"   "hsa-mir-551b"   "hsa-mir-570"   
## [61] "hsa-mir-605"    "hsa-mir-607"    "hsa-mir-636"    "hsa-mir-659"   
## [65] "hsa-mir-663"    "hsa-mir-7-2"    "hsa-mir-708"    "hsa-mir-767"   
## [69] "hsa-mir-9-3"    "hsa-mir-935"    "hsa-mir-940"   
## [1] "bicluster4"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "EGFR.RPPA"      "IRS1.RPPA"     
##  [5] "G6PD.R2Gn"      "IGFBP2.R2Gn"    "MET.R2Gn"       "MAPK1.R2Gn"    
##  [9] "FASN.R2Gn"      "EEF2.R2Gn"      "RPS6.R2Gn"      "PTK2.R2Gn"     
## [13] "KEAP1.R2Gn"     "CCND1.R2Gn"     "MYH9.R2Gn"      "PIK3R2.R2Gn"   
## [17] "TFRC.R2Gn"      "ERRFI1.R2Gn"    "SYP.R2Gn"       "SNAI2.R2Gn"    
## [21] "hsa-mir-105-1"  "hsa-mir-105-2"  "hsa-mir-1224"   "hsa-mir-1247"  
## [25] "hsa-mir-1248"   "hsa-mir-1249"   "hsa-mir-1270-1" "hsa-mir-1291"  
## [29] "hsa-mir-135b"   "hsa-mir-200a"   "hsa-mir-200b"   "hsa-mir-204"   
## [33] "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-216b"   "hsa-mir-217"   
## [37] "hsa-mir-218-1"  "hsa-mir-301b"   "hsa-mir-31"     "hsa-mir-3173"  
## [41] "hsa-mir-3191"   "hsa-mir-320c-2" "hsa-mir-326"    "hsa-mir-346"   
## [45] "hsa-mir-34b"    "hsa-mir-3610"   "hsa-mir-3614"   "hsa-mir-3620"  
## [49] "hsa-mir-3676"   "hsa-mir-3909"   "hsa-mir-3923"   "hsa-mir-4326"  
## [53] "hsa-mir-489"    "hsa-mir-511-1"  "hsa-mir-511-2"  "hsa-mir-516a-1"
## [57] "hsa-mir-516a-2" "hsa-mir-545"    "hsa-mir-548j"   "hsa-mir-548s"  
## [61] "hsa-mir-552"    "hsa-mir-561"    "hsa-mir-580"    "hsa-mir-584"   
## [65] "hsa-mir-615"    "hsa-mir-627"    "hsa-mir-642a"   "hsa-mir-675"   
## [69] "hsa-mir-891a"   "hsa-mir-9-1"    "hsa-mir-9-2"   
## [1] "bicluster36"
##  [1] "IGFBP2.RPPA"    "ASNS.RPPA"      "EGFR.RPPA"      "ACVRL1.RPPA"   
##  [5] "TTF1.RPPA"      "TFRC.RPPA"      "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [9] "AKT1.R2Gn"      "GATA3.R2Gn"     "MAPK1.R2Gn"     "ITGA2.R2Gn"    
## [13] "LCN2.R2Gn"      "KIT.R2Gn"       "MYH9.R2Gn"      "COL6A1.R2Gn"   
## [17] "ANXA1.R2Gn"     "TFRC.R2Gn"      "HSPA1A.R2Gn"    "SYP.R2Gn"      
## [21] "RET.R2Gn"       "CHGA.R2Gn"      "hsa-mir-1179"   "hsa-mir-1193"  
## [25] "hsa-mir-122"    "hsa-mir-124-2"  "hsa-mir-124-3"  "hsa-mir-1248"  
## [29] "hsa-mir-1249"   "hsa-mir-1251"   "hsa-mir-1254"   "hsa-mir-1255a" 
## [33] "hsa-mir-1262"   "hsa-mir-1274b"  "hsa-mir-1305"   "hsa-mir-135a-2"
## [37] "hsa-mir-184"    "hsa-mir-187"    "hsa-mir-2114"   "hsa-mir-30c-1" 
## [41] "hsa-mir-3173"   "hsa-mir-3187"   "hsa-mir-3199-1" "hsa-mir-3199-2"
## [45] "hsa-mir-320c-2" "hsa-mir-3610"   "hsa-mir-3676"   "hsa-mir-372"   
## [49] "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-429"    "hsa-mir-433"   
## [53] "hsa-mir-452"    "hsa-mir-504"    "hsa-mir-516a-1" "hsa-mir-517a"  
## [57] "hsa-mir-544"    "hsa-mir-548j"   "hsa-mir-548v"   "hsa-mir-551b"  
## [61] "hsa-mir-552"    "hsa-mir-577"    "hsa-mir-585"    "hsa-mir-607"   
## [65] "hsa-mir-639"    "hsa-mir-659"    "hsa-mir-7-3"    "hsa-mir-876"   
## [69] "hsa-mir-9-1"    "hsa-mir-9-2"    "hsa-mir-9-3"   
## [1] "bicluster14"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "IRS1.RPPA"      "NF2.RPPA"      
##  [5] "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "FN1.R2Gn"       "MET.R2Gn"      
##  [9] "NOTCH1.R2Gn"    "YWHAZ.R2Gn"     "CCNE1.R2Gn"     "FASN.R2Gn"     
## [13] "EEF2.R2Gn"      "ACVRL1.R2Gn"    "CTNNB1.R2Gn"    "STMN1.R2Gn"    
## [17] "FOXO3.R2Gn"     "BCL2.R2Gn"      "IRS1.R2Gn"      "CCND1.R2Gn"    
## [21] "PIK3R1.R2Gn"    "XBP1.R2Gn"      "GAPDH.R2Gn"     "MYH11.R2Gn"    
## [25] "COL6A1.R2Gn"    "HSPA1A.R2Gn"    "SYP.R2Gn"       "hsa-mir-105-1" 
## [29] "hsa-mir-1249"   "hsa-mir-1262"   "hsa-mir-1269"   "hsa-mir-1271"  
## [33] "hsa-mir-1305"   "hsa-mir-138-1"  "hsa-mir-153-1"  "hsa-mir-195"   
## [37] "hsa-mir-200a"   "hsa-mir-200b"   "hsa-mir-216b"   "hsa-mir-26a-1" 
## [41] "hsa-mir-301b"   "hsa-mir-3130-1" "hsa-mir-3200"   "hsa-mir-320c-2"
## [45] "hsa-mir-329-1"  "hsa-mir-3678"   "hsa-mir-3682"   "hsa-mir-3690"  
## [49] "hsa-mir-3926-1" "hsa-mir-429"    "hsa-mir-488"    "hsa-mir-497"   
## [53] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"  
## [57] "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-548j"  
## [61] "hsa-mir-548q"   "hsa-mir-548s"   "hsa-mir-550a-1" "hsa-mir-585"   
## [65] "hsa-mir-7-2"    "hsa-mir-7-3"    "hsa-mir-767"    "hsa-mir-885"   
## [69] "hsa-mir-891a"   "hsa-mir-9-3"    "hsa-mir-940"   
## [1] "bicluster17"
##  [1] "G6PD.RPPA"      "PEA15.RPPA"     "EGFR.RPPA"      "FASN.RPPA"     
##  [5] "TSC1.RPPA"      "TTF1.RPPA"      "GAPDH.RPPA"     "MYH11.RPPA"    
##  [9] "TFRC.RPPA"      "ERBB3.R2Gn"     "PRKCD.R2Gn"     "FN1.R2Gn"      
## [13] "PEA15.R2Gn"     "YWHAZ.R2Gn"     "ITGA2.R2Gn"     "ADAR.R2Gn"     
## [17] "SERPINE1.R2Gn"  "CTNNB1.R2Gn"    "SHC1.R2Gn"      "CCND1.R2Gn"    
## [21] "PIK3R1.R2Gn"    "GAPDH.R2Gn"     "MYH9.R2Gn"      "PXN.R2Gn"      
## [25] "ANXA7.R2Gn"     "hsa-mir-124-3"  "hsa-mir-1255a"  "hsa-mir-1258"  
## [29] "hsa-mir-1262"   "hsa-mir-1270-1" "hsa-mir-1292"   "hsa-mir-181d"  
## [33] "hsa-mir-182"    "hsa-mir-184"    "hsa-mir-200a"   "hsa-mir-205"   
## [37] "hsa-mir-2114"   "hsa-mir-218-1"  "hsa-mir-219-1"  "hsa-mir-30c-1" 
## [41] "hsa-mir-3170"   "hsa-mir-3199-1" "hsa-mir-3199-2" "hsa-mir-34b"   
## [45] "hsa-mir-3610"   "hsa-mir-3651"   "hsa-mir-3652"   "hsa-mir-3926-2"
## [49] "hsa-mir-4326"   "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [53] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [57] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [61] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [65] "hsa-mir-636"    "hsa-mir-659"    "hsa-mir-670"    "hsa-mir-760"   
## [69] "hsa-mir-9-1"    "hsa-mir-9-2"    "hsa-mir-9-3"   
## [1] "bicluster3"
##  [1] "ASNS.RPPA"      "PTEN.RPPA"      "FASN.RPPA"      "ACVRL1.RPPA"   
##  [5] "PDCD4.RPPA"     "MSH6.RPPA"      "ERCC1.RPPA"     "MSH2.RPPA"     
##  [9] "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "FN1.R2Gn"       "CDH2.R2Gn"     
## [13] "BECN1.R2Gn"     "MAPK1.R2Gn"     "ADAR.R2Gn"      "SERPINE1.R2Gn" 
## [17] "PIK3R1.R2Gn"    "NRG1.R2Gn"      "MYH9.R2Gn"      "HSPA1A.R2Gn"   
## [21] "SYP.R2Gn"       "PARP1.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1224"  
## [25] "hsa-mir-124-3"  "hsa-mir-1248"   "hsa-mir-1270-1" "hsa-mir-1271"  
## [29] "hsa-mir-129-2"  "hsa-mir-1292"   "hsa-mir-1304"   "hsa-mir-182"   
## [33] "hsa-mir-183"    "hsa-mir-205"    "hsa-mir-206"    "hsa-mir-2114"  
## [37] "hsa-mir-26a-1"  "hsa-mir-296"    "hsa-mir-3144"   "hsa-mir-3166"  
## [41] "hsa-mir-3191"   "hsa-mir-320c-2" "hsa-mir-3676"   "hsa-mir-3678"  
## [45] "hsa-mir-3682"   "hsa-mir-3940"   "hsa-mir-429"    "hsa-mir-451"   
## [49] "hsa-mir-499"    "hsa-mir-504"    "hsa-mir-511-2"  "hsa-mir-516a-1"
## [53] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [57] "hsa-mir-518f"   "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"  
## [61] "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-552"    "hsa-mir-570"   
## [65] "hsa-mir-580"    "hsa-mir-624"    "hsa-mir-663"    "hsa-mir-7-2"   
## [69] "hsa-mir-760"    "hsa-mir-765"    "hsa-mir-96"    
## [1] "bicluster35"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "GATA3.RPPA"     "PEA15.RPPA"    
##  [5] "INPP4B.RPPA"    "TSC1.RPPA"      "PDCD4.RPPA"     "VHL.RPPA"      
##  [9] "AR.RPPA"        "GAPDH.RPPA"     "ERCC1.RPPA"     "TFRC.RPPA"     
## [13] "CDKN1B.R2Gn"    "PRKCD.R2Gn"     "IGFBP2.R2Gn"    "FN1.R2Gn"      
## [17] "CDH2.R2Gn"      "EEF2.R2Gn"      "YWHAE.R2Gn"     "PRKCA.R2Gn"    
## [21] "PRRT2.R2Gn"     "CAV1.R2Gn"      "GAPDH.R2Gn"     "COL6A1.R2Gn"   
## [25] "HSPA1A.R2Gn"    "hsa-mir-105-1"  "hsa-mir-1224"   "hsa-mir-1248"  
## [29] "hsa-mir-1255a"  "hsa-mir-1271"   "hsa-mir-192"    "hsa-mir-196a-2"
## [33] "hsa-mir-200b"   "hsa-mir-204"    "hsa-mir-216a"   "hsa-mir-217"   
## [37] "hsa-mir-218-1"  "hsa-mir-296"    "hsa-mir-301b"   "hsa-mir-3144"  
## [41] "hsa-mir-3191"   "hsa-mir-3199-1" "hsa-mir-3200"   "hsa-mir-320c-1"
## [45] "hsa-mir-320c-2" "hsa-mir-346"    "hsa-mir-3926-2" "hsa-mir-3928"  
## [49] "hsa-mir-3940"   "hsa-mir-450a-1" "hsa-mir-450a-2" "hsa-mir-455"   
## [53] "hsa-mir-488"    "hsa-mir-511-1"  "hsa-mir-511-2"  "hsa-mir-516b-1"
## [57] "hsa-mir-517a"   "hsa-mir-518c"   "hsa-mir-526b"   "hsa-mir-545"   
## [61] "hsa-mir-548q"   "hsa-mir-548v"   "hsa-mir-550a-2" "hsa-mir-552"   
## [65] "hsa-mir-615"    "hsa-mir-7-2"    "hsa-mir-7-3"    "hsa-mir-760"   
## [69] "hsa-mir-891a"   "hsa-mir-937"    "hsa-mir-98"    
## [1] "bicluster39"
##  [1] "RBM15.RPPA"     "VHL.RPPA"       "XBP1.RPPA"      "GAPDH.RPPA"    
##  [5] "MSH6.RPPA"      "TFRC.RPPA"      "MAPK14.R2Gn"    "CDH2.R2Gn"     
##  [9] "NEK7.R2Gn"      "EEF2.R2Gn"      "YWHAE.R2Gn"     "PDCD4.R2Gn"    
## [13] "PARK7.R2Gn"     "PIK3R1.R2Gn"    "PRDX1.R2Gn"     "TYMS.R2Gn"     
## [17] "MYH9.R2Gn"      "FOXM1.R2Gn"     "STAT5A.R2Gn"    "NDRG1.R2Gn"    
## [21] "YWHAB.R2Gn"     "TFRC.R2Gn"      "ERRFI1.R2Gn"    "PARP1.R2Gn"    
## [25] "SQSTM1.R2Gn"    "hsa-let-7c"     "hsa-mir-105-1"  "hsa-mir-105-2" 
## [29] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1247"   "hsa-mir-1248"  
## [33] "hsa-mir-1251"   "hsa-mir-1255a"  "hsa-mir-125b-1" "hsa-mir-125b-2"
## [37] "hsa-mir-1269"   "hsa-mir-1274b"  "hsa-mir-129-2"  "hsa-mir-133b"  
## [41] "hsa-mir-135a-1" "hsa-mir-141"    "hsa-mir-182"    "hsa-mir-183"   
## [45] "hsa-mir-184"    "hsa-mir-218-1"  "hsa-mir-296"    "hsa-mir-301b"  
## [49] "hsa-mir-3144"   "hsa-mir-3199-2" "hsa-mir-329-1"  "hsa-mir-3619"  
## [53] "hsa-mir-3687"   "hsa-mir-3917"   "hsa-mir-3923"   "hsa-mir-3928"  
## [57] "hsa-mir-411"    "hsa-mir-570"    "hsa-mir-577"    "hsa-mir-579"   
## [61] "hsa-mir-607"    "hsa-mir-627"    "hsa-mir-643"    "hsa-mir-675"   
## [65] "hsa-mir-7-3"    "hsa-mir-767"    "hsa-mir-873"    "hsa-mir-876"   
## [69] "hsa-mir-939"    "hsa-mir-940"    "hsa-mir-99a"   
## [1] "bicluster26"
##  [1] "PTEN.RPPA"      "ATM.RPPA"       "EGFR.RPPA"      "PDCD4.RPPA"    
##  [5] "AR.RPPA"        "TFRC.RPPA"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
##  [9] "FN1.R2Gn"       "CDH2.R2Gn"      "VASP.R2Gn"      "ITGA2.R2Gn"    
## [13] "BAP1.R2Gn"      "EEF2.R2Gn"      "SERPINE1.R2Gn"  "CTNNB1.R2Gn"   
## [17] "JUN.R2Gn"       "PIK3R1.R2Gn"    "NDRG1.R2Gn"     "TFRC.R2Gn"     
## [21] "ERRFI1.R2Gn"    "SQSTM1.R2Gn"    "hsa-mir-105-2"  "hsa-mir-124-1" 
## [25] "hsa-mir-1249"   "hsa-mir-1270-2" "hsa-mir-1274b"  "hsa-mir-1292"  
## [29] "hsa-mir-141"    "hsa-mir-190b"   "hsa-mir-200a"   "hsa-mir-216b"  
## [33] "hsa-mir-217"    "hsa-mir-224"    "hsa-mir-296"    "hsa-mir-3130-1"
## [37] "hsa-mir-3144"   "hsa-mir-3173"   "hsa-mir-3193"   "hsa-mir-3199-1"
## [41] "hsa-mir-320c-2" "hsa-mir-326"    "hsa-mir-34b"    "hsa-mir-3620"  
## [45] "hsa-mir-3652"   "hsa-mir-3662"   "hsa-mir-3917"   "hsa-mir-3923"  
## [49] "hsa-mir-452"    "hsa-mir-488"    "hsa-mir-499"    "hsa-mir-516a-1"
## [53] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-518b"   "hsa-mir-520a"  
## [57] "hsa-mir-525"    "hsa-mir-548j"   "hsa-mir-548q"   "hsa-mir-561"   
## [61] "hsa-mir-577"    "hsa-mir-580"    "hsa-mir-627"    "hsa-mir-643"   
## [65] "hsa-mir-656"    "hsa-mir-663"    "hsa-mir-675"    "hsa-mir-7-2"   
## [69] "hsa-mir-7-3"    "hsa-mir-767"    "hsa-mir-873"   
## [1] "bicluster40"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "EGFR.RPPA"      "FASN.RPPA"     
##  [5] "ACVRL1.RPPA"    "AR.RPPA"        "PRDX1.RPPA"     "MSH6.RPPA"     
##  [9] "MYH11.RPPA"     "MSH2.RPPA"      "IGFBP2.R2Gn"    "FN1.R2Gn"      
## [13] "CDH2.R2Gn"      "EEF2.R2Gn"      "RPS6.R2Gn"      "TGM2.R2Gn"     
## [17] "MYH11.R2Gn"     "HSPA1A.R2Gn"    "SQSTM1.R2Gn"    "hsa-mir-1-2"   
## [21] "hsa-mir-1185-1" "hsa-mir-122"    "hsa-mir-1228"   "hsa-mir-124-3" 
## [25] "hsa-mir-1249"   "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-129-1" 
## [29] "hsa-mir-129-2"  "hsa-mir-146a"   "hsa-mir-191"    "hsa-mir-200a"  
## [33] "hsa-mir-205"    "hsa-mir-214"    "hsa-mir-218-1"  "hsa-mir-224"   
## [37] "hsa-mir-3065"   "hsa-mir-3166"   "hsa-mir-3170"   "hsa-mir-3190"  
## [41] "hsa-mir-3199-1" "hsa-mir-329-1"  "hsa-mir-346"    "hsa-mir-3610"  
## [45] "hsa-mir-3648"   "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-452"   
## [49] "hsa-mir-466"    "hsa-mir-489"    "hsa-mir-490"    "hsa-mir-516a-1"
## [53] "hsa-mir-517a"   "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-548b"  
## [57] "hsa-mir-550a-2" "hsa-mir-551b"   "hsa-mir-552"    "hsa-mir-639"   
## [61] "hsa-mir-656"    "hsa-mir-659"    "hsa-mir-665"    "hsa-mir-675"   
## [65] "hsa-mir-7-2"    "hsa-mir-760"    "hsa-mir-767"    "hsa-mir-873"   
## [69] "hsa-mir-876"    "hsa-mir-885"    "hsa-mir-937"   
## [1] "bicluster18"
##  [1] "GATA3.RPPA"     "PEA15.RPPA"     "MSH6.RPPA"      "MYH11.RPPA"    
##  [5] "PDK1.RPPA"      "MSH2.RPPA"      "PREX1.RPPA"     "DIRAS3.R2Gn"   
##  [9] "YAP1.R2Gn"      "ERBB3.R2Gn"     "CDH2.R2Gn"      "GATA3.R2Gn"    
## [13] "PEA15.R2Gn"     "EIF4G1.R2Gn"    "VASP.R2Gn"      "ITGA2.R2Gn"    
## [17] "ADAR.R2Gn"      "EEF2.R2Gn"      "CTNNB1.R2Gn"    "RPS6.R2Gn"     
## [21] "TGM2.R2Gn"      "IRS1.R2Gn"      "GAPDH.R2Gn"     "KRT5.R2Gn"     
## [25] "NDRG1.R2Gn"     "BID.R2Gn"       "TFRC.R2Gn"      "SYP.R2Gn"      
## [29] "PARP1.R2Gn"     "TFF1.R2Gn"      "hsa-let-7e"     "hsa-let-7f-2"  
## [33] "hsa-mir-103-2"  "hsa-mir-124-3"  "hsa-mir-1254"   "hsa-mir-1255a" 
## [37] "hsa-mir-1269"   "hsa-mir-1270-2" "hsa-mir-128-1"  "hsa-mir-1304"  
## [41] "hsa-mir-135b"   "hsa-mir-196b"   "hsa-mir-203"    "hsa-mir-205"   
## [45] "hsa-mir-224"    "hsa-mir-3130-1" "hsa-mir-3144"   "hsa-mir-3170"  
## [49] "hsa-mir-320c-2" "hsa-mir-3652"   "hsa-mir-3678"   "hsa-mir-383"   
## [53] "hsa-mir-3922"   "hsa-mir-3926-2" "hsa-mir-452"    "hsa-mir-507"   
## [57] "hsa-mir-510"    "hsa-mir-516a-1" "hsa-mir-518b"   "hsa-mir-544"   
## [61] "hsa-mir-548b"   "hsa-mir-548q"   "hsa-mir-561"    "hsa-mir-585"   
## [65] "hsa-mir-639"    "hsa-mir-656"    "hsa-mir-670"    "hsa-mir-7-2"   
## [69] "hsa-mir-765"    "hsa-mir-876"    "hsa-mir-940"   
## [1] "bicluster6"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "RBM15.RPPA"     "GATA3.RPPA"    
##  [5] "EGFR.RPPA"      "FASN.RPPA"      "TTF1.RPPA"      "AR.RPPA"       
##  [9] "PRDX1.RPPA"     "MSH6.RPPA"      "KDR.R2Gn"       "IGFBP2.R2Gn"   
## [13] "CDH2.R2Gn"      "RB1.R2Gn"       "EIF4G1.R2Gn"    "YWHAZ.R2Gn"    
## [17] "RAB11A.R2Gn"    "KIT.R2Gn"       "TUBA1B.R2Gn"    "NDRG1.R2Gn"    
## [21] "HSPA1A.R2Gn"    "ERRFI1.R2Gn"    "IDH3A.R2Gn"     "hsa-mir-1228"  
## [25] "hsa-mir-1245"   "hsa-mir-1247"   "hsa-mir-1248"   "hsa-mir-1269"  
## [29] "hsa-mir-1270-1" "hsa-mir-1271"   "hsa-mir-1292"   "hsa-mir-135a-1"
## [33] "hsa-mir-135b"   "hsa-mir-138-1"  "hsa-mir-138-2"  "hsa-mir-1909"  
## [37] "hsa-mir-200b"   "hsa-mir-210"    "hsa-mir-216a"   "hsa-mir-217"   
## [41] "hsa-mir-218-1"  "hsa-mir-26a-1"  "hsa-mir-296"    "hsa-mir-30c-1" 
## [45] "hsa-mir-3144"   "hsa-mir-3199-1" "hsa-mir-320c-1" "hsa-mir-34b"   
## [49] "hsa-mir-3614"   "hsa-mir-3619"   "hsa-mir-3620"   "hsa-mir-3648"  
## [53] "hsa-mir-372"    "hsa-mir-3912"   "hsa-mir-3926-2" "hsa-mir-3934"  
## [57] "hsa-mir-3940"   "hsa-mir-466"    "hsa-mir-548v"   "hsa-mir-550a-2"
## [61] "hsa-mir-551b"   "hsa-mir-585"    "hsa-mir-592"    "hsa-mir-605"   
## [65] "hsa-mir-627"    "hsa-mir-636"    "hsa-mir-642a"   "hsa-mir-765"   
## [69] "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-939"   
## [1] "bicluster30"
##  [1] "EGFR.RPPA"      "INPP4B.RPPA"    "ACVRL1.RPPA"    "PRDX1.RPPA"    
##  [5] "TFRC.RPPA"      "RPS6KA1.R2Gn"   "SRC.R2Gn"       "BAP1.R2Gn"     
##  [9] "ADAR.R2Gn"      "PCNA.R2Gn"      "CTNNB1.R2Gn"    "RPS6.R2Gn"     
## [13] "SHC1.R2Gn"      "STMN1.R2Gn"     "CCND1.R2Gn"     "SYP.R2Gn"      
## [17] "RBM3.R2Gn"      "SYK.R2Gn"       "RET.R2Gn"       "SQSTM1.R2Gn"   
## [21] "hsa-mir-105-2"  "hsa-mir-124-1"  "hsa-mir-1249"   "hsa-mir-1251"  
## [25] "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1274b"  "hsa-mir-1292"  
## [29] "hsa-mir-133b"   "hsa-mir-137"    "hsa-mir-138-1"  "hsa-mir-153-1" 
## [33] "hsa-mir-153-2"  "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-30a"   
## [37] "hsa-mir-3144"   "hsa-mir-3173"   "hsa-mir-3199-1" "hsa-mir-320c-2"
## [41] "hsa-mir-3610"   "hsa-mir-3614"   "hsa-mir-3655"   "hsa-mir-3662"  
## [45] "hsa-mir-3676"   "hsa-mir-3678"   "hsa-mir-3682"   "hsa-mir-3917"  
## [49] "hsa-mir-3934"   "hsa-mir-455"    "hsa-mir-491"    "hsa-mir-499"   
## [53] "hsa-mir-507"    "hsa-mir-519a-2" "hsa-mir-548s"   "hsa-mir-551b"  
## [57] "hsa-mir-552"    "hsa-mir-561"    "hsa-mir-570"    "hsa-mir-577"   
## [61] "hsa-mir-618"    "hsa-mir-624"    "hsa-mir-639"    "hsa-mir-643"   
## [65] "hsa-mir-7-2"    "hsa-mir-7-3"    "hsa-mir-760"    "hsa-mir-765"   
## [69] "hsa-mir-767"    "hsa-mir-939"    "hsa-mir-940"   
## [1] "bicluster8"
##  [1] "G6PD.RPPA"      "ASNS.RPPA"      "PTEN.RPPA"      "PEA15.RPPA"    
##  [5] "ATM.RPPA"       "PRDX1.RPPA"     "MYH11.RPPA"     "TFRC.RPPA"     
##  [9] "KDR.R2Gn"       "ERBB3.R2Gn"     "FN1.R2Gn"       "AKT2.R2Gn"     
## [13] "CDH2.R2Gn"      "EEF2.R2Gn"      "SERPINE1.R2Gn"  "ACVRL1.R2Gn"   
## [17] "GSK3A.R2Gn"     "TGM2.R2Gn"      "KEAP1.R2Gn"     "GAPDH.R2Gn"    
## [21] "TUBA1B.R2Gn"    "PDK1.R2Gn"      "hsa-mir-100"    "hsa-mir-1179"  
## [25] "hsa-mir-122"    "hsa-mir-1255a"  "hsa-mir-1270-1" "hsa-mir-1270-2"
## [29] "hsa-mir-129-1"  "hsa-mir-137"    "hsa-mir-138-2"  "hsa-mir-141"   
## [33] "hsa-mir-146b"   "hsa-mir-149"    "hsa-mir-153-1"  "hsa-mir-196a-2"
## [37] "hsa-mir-210"    "hsa-mir-216a"   "hsa-mir-296"    "hsa-mir-30c-1" 
## [41] "hsa-mir-3170"   "hsa-mir-3191"   "hsa-mir-320c-1" "hsa-mir-329-2" 
## [45] "hsa-mir-346"    "hsa-mir-34b"    "hsa-mir-3610"   "hsa-mir-3652"  
## [49] "hsa-mir-3678"   "hsa-mir-3682"   "hsa-mir-3687"   "hsa-mir-3909"  
## [53] "hsa-mir-3934"   "hsa-mir-3940"   "hsa-mir-451"    "hsa-mir-486"   
## [57] "hsa-mir-511-2"  "hsa-mir-518b"   "hsa-mir-519a-2" "hsa-mir-520a"  
## [61] "hsa-mir-548s"   "hsa-mir-552"    "hsa-mir-577"    "hsa-mir-592"   
## [65] "hsa-mir-627"    "hsa-mir-639"    "hsa-mir-656"    "hsa-mir-675"   
## [69] "hsa-mir-765"    "hsa-mir-876"    "hsa-mir-939"   
## [1] "bicluster11"
##  [1] "G6PD.RPPA"      "ASNS.RPPA"      "PEA15.RPPA"     "ACVRL1.RPPA"   
##  [5] "VHL.RPPA"       "AR.RPPA"        "MSH6.RPPA"      "MYH11.RPPA"    
##  [9] "PDK1.RPPA"      "MSH2.RPPA"      "G6PD.R2Gn"      "ERBB3.R2Gn"    
## [13] "EIF4EBP1.R2Gn"  "FN1.R2Gn"       "CDKN1A.R2Gn"    "EEF2.R2Gn"     
## [17] "YWHAE.R2Gn"     "RPS6.R2Gn"      "TGM2.R2Gn"      "GAPDH.R2Gn"    
## [21] "COL6A1.R2Gn"    "SYP.R2Gn"       "CHGA.R2Gn"      "hsa-mir-1269"  
## [25] "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-129-2"  "hsa-mir-1293"  
## [29] "hsa-mir-135b"   "hsa-mir-1909"   "hsa-mir-206"    "hsa-mir-216b"  
## [33] "hsa-mir-26a-1"  "hsa-mir-296"    "hsa-mir-3187"   "hsa-mir-3199-2"
## [37] "hsa-mir-320c-1" "hsa-mir-329-1"  "hsa-mir-345"    "hsa-mir-3610"  
## [41] "hsa-mir-3655"   "hsa-mir-3676"   "hsa-mir-3677"   "hsa-mir-372"   
## [45] "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-411"    "hsa-mir-429"   
## [49] "hsa-mir-4326"   "hsa-mir-485"    "hsa-mir-494"    "hsa-mir-506"   
## [53] "hsa-mir-507"    "hsa-mir-510"    "hsa-mir-513a-2" "hsa-mir-516a-1"
## [57] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-518b"   "hsa-mir-518f"  
## [61] "hsa-mir-525"    "hsa-mir-543"    "hsa-mir-548v"   "hsa-mir-570"   
## [65] "hsa-mir-580"    "hsa-mir-592"    "hsa-mir-605"    "hsa-mir-639"   
## [69] "hsa-mir-655"    "hsa-mir-765"    "hsa-mir-940"   
## [1] "bicluster15"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "PEA15.RPPA"     "BRCA2.RPPA"    
##  [5] "FASN.RPPA"      "PCNA.RPPA"      "PDCD4.RPPA"     "TTF1.RPPA"     
##  [9] "VHL.RPPA"       "PRDX1.RPPA"     "XBP1.RPPA"      "IGFBP2.R2Gn"   
## [13] "FN1.R2Gn"       "SRC.R2Gn"       "MET.R2Gn"       "SMAD4.R2Gn"    
## [17] "PRKCA.R2Gn"     "COL6A1.R2Gn"    "NDRG1.R2Gn"     "ANXA1.R2Gn"    
## [21] "ERRFI1.R2Gn"    "SYP.R2Gn"       "SQSTM1.R2Gn"    "hsa-mir-105-1" 
## [25] "hsa-mir-124-3"  "hsa-mir-1245"   "hsa-mir-1258"   "hsa-mir-1270-1"
## [29] "hsa-mir-1270-2" "hsa-mir-1274b"  "hsa-mir-130a"   "hsa-mir-135a-1"
## [33] "hsa-mir-153-1"  "hsa-mir-184"    "hsa-mir-206"    "hsa-mir-2114"  
## [37] "hsa-mir-218-1"  "hsa-mir-301b"   "hsa-mir-30c-1"  "hsa-mir-3130-1"
## [41] "hsa-mir-3144"   "hsa-mir-3173"   "hsa-mir-320c-1" "hsa-mir-346"   
## [45] "hsa-mir-34b"    "hsa-mir-34c"    "hsa-mir-3662"   "hsa-mir-3922"  
## [49] "hsa-mir-455"    "hsa-mir-483"    "hsa-mir-507"    "hsa-mir-513a-1"
## [53] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"  
## [57] "hsa-mir-518b"   "hsa-mir-519a-2" "hsa-mir-548b"   "hsa-mir-551b"  
## [61] "hsa-mir-552"    "hsa-mir-561"    "hsa-mir-570"    "hsa-mir-581"   
## [65] "hsa-mir-585"    "hsa-mir-670"    "hsa-mir-7-2"    "hsa-mir-765"   
## [69] "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-935"   
## [1] "bicluster32"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "RBM15.RPPA"     "FASN.RPPA"     
##  [5] "MSH6.RPPA"      "TFRC.RPPA"      "DIRAS3.R2Gn"    "ERBB3.R2Gn"    
##  [9] "IGFBP2.R2Gn"    "FN1.R2Gn"       "AKT3.R2Gn"      "CDKN1A.R2Gn"   
## [13] "ADAR.R2Gn"      "EEF2.R2Gn"      "SERPINE1.R2Gn"  "CTNNB1.R2Gn"   
## [17] "LCN2.R2Gn"      "RPS6.R2Gn"      "JUN.R2Gn"       "NRG1.R2Gn"     
## [21] "PRKAA1.R2Gn"    "TFRC.R2Gn"      "HSPA1A.R2Gn"    "SNAI2.R2Gn"    
## [25] "CDKN2A.R2Gn"    "IDH3A.R2Gn"     "hsa-mir-105-1"  "hsa-mir-105-2" 
## [29] "hsa-mir-1185-2" "hsa-mir-1226"   "hsa-mir-124-2"  "hsa-mir-1249"  
## [33] "hsa-mir-1269"   "hsa-mir-129-2"  "hsa-mir-133b"   "hsa-mir-138-1" 
## [37] "hsa-mir-141"    "hsa-mir-144"    "hsa-mir-149"    "hsa-mir-191"   
## [41] "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-3127"   "hsa-mir-3170"  
## [45] "hsa-mir-3173"   "hsa-mir-3199-2" "hsa-mir-3926-2" "hsa-mir-451"   
## [49] "hsa-mir-499"    "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a"  
## [53] "hsa-mir-518c"   "hsa-mir-518f"   "hsa-mir-519a-1" "hsa-mir-519a-2"
## [57] "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-548j"  
## [61] "hsa-mir-561"    "hsa-mir-570"    "hsa-mir-580"    "hsa-mir-605"   
## [65] "hsa-mir-616"    "hsa-mir-663"    "hsa-mir-7-2"    "hsa-mir-7-3"   
## [69] "hsa-mir-708"    "hsa-mir-760"    "hsa-mir-935"   
## [1] "bicluster33"
##  [1] "RBM15.RPPA"     "ATM.RPPA"       "EGFR.RPPA"      "PDCD4.RPPA"    
##  [5] "TFRC.RPPA"      "IGFBP2.R2Gn"    "FN1.R2Gn"       "AKT1.R2Gn"     
##  [9] "FASN.R2Gn"      "SERPINE1.R2Gn"  "YWHAE.R2Gn"     "CTNNB1.R2Gn"   
## [13] "FOXO3.R2Gn"     "GAPDH.R2Gn"     "COL6A1.R2Gn"    "HSPA1A.R2Gn"   
## [17] "hsa-mir-1185-2" "hsa-mir-1228"   "hsa-mir-1247"   "hsa-mir-1249"  
## [21] "hsa-mir-1255a"  "hsa-mir-129-2"  "hsa-mir-1293"   "hsa-mir-133b"  
## [25] "hsa-mir-137"    "hsa-mir-138-1"  "hsa-mir-138-2"  "hsa-mir-148a"  
## [29] "hsa-mir-187"    "hsa-mir-1909"   "hsa-mir-196a-1" "hsa-mir-196a-2"
## [33] "hsa-mir-200a"   "hsa-mir-202"    "hsa-mir-2114"   "hsa-mir-216b"  
## [37] "hsa-mir-301b"   "hsa-mir-3144"   "hsa-mir-3173"   "hsa-mir-3191"  
## [41] "hsa-mir-3193"   "hsa-mir-32"     "hsa-mir-329-1"  "hsa-mir-329-2" 
## [45] "hsa-mir-346"    "hsa-mir-3678"   "hsa-mir-383"    "hsa-mir-490"   
## [49] "hsa-mir-499"    "hsa-mir-504"    "hsa-mir-510"    "hsa-mir-516a-1"
## [53] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [57] "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"   "hsa-mir-526b"  
## [61] "hsa-mir-585"    "hsa-mir-605"    "hsa-mir-615"    "hsa-mir-642a"  
## [65] "hsa-mir-670"    "hsa-mir-765"    "hsa-mir-767"    "hsa-mir-876"   
## [69] "hsa-mir-891a"   "hsa-mir-939"    "hsa-mir-940"   
## [1] "bicluster24"
##  [1] "PEA15.RPPA"     "EGFR.RPPA"      "TTF1.RPPA"      "VHL.RPPA"      
##  [5] "XBP1.RPPA"      "MSH6.RPPA"      "NF2.RPPA"       "PDK1.RPPA"     
##  [9] "ERCC1.RPPA"     "TFRC.RPPA"      "EIF4G1.R2Gn"    "BAP1.R2Gn"     
## [13] "SERPINE1.R2Gn"  "CTNNB1.R2Gn"    "RPS6.R2Gn"      "PRKCA.R2Gn"    
## [17] "CTNNA1.R2Gn"    "PIK3R1.R2Gn"    "FOXM1.R2Gn"     "NDRG1.R2Gn"    
## [21] "PIK3R2.R2Gn"    "HSPA1A.R2Gn"    "PARP1.R2Gn"     "RET.R2Gn"      
## [25] "CHGA.R2Gn"      "hsa-mir-1197"   "hsa-mir-124-3"  "hsa-mir-1258"  
## [29] "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-1291"   "hsa-mir-1304"  
## [33] "hsa-mir-1305"   "hsa-mir-138-2"  "hsa-mir-187"    "hsa-mir-200a"  
## [37] "hsa-mir-200b"   "hsa-mir-205"    "hsa-mir-26a-1"  "hsa-mir-329-2" 
## [41] "hsa-mir-346"    "hsa-mir-3607"   "hsa-mir-3610"   "hsa-mir-3687"  
## [45] "hsa-mir-3909"   "hsa-mir-3926-1" "hsa-mir-429"    "hsa-mir-490"   
## [49] "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-507"    "hsa-mir-510"   
## [53] "hsa-mir-511-1"  "hsa-mir-513a-2" "hsa-mir-516a-1" "hsa-mir-516a-2"
## [57] "hsa-mir-516b-1" "hsa-mir-518b"   "hsa-mir-548q"   "hsa-mir-548v"  
## [61] "hsa-mir-552"    "hsa-mir-570"    "hsa-mir-577"    "hsa-mir-579"   
## [65] "hsa-mir-605"    "hsa-mir-636"    "hsa-mir-653"    "hsa-mir-656"   
## [69] "hsa-mir-770"    "hsa-mir-937"    "hsa-mir-939"
top_10_perc_result = list("1bc" = f1_10,
                         "2bc" = f2_10,
                         "3bc" = f3_10,
                         "5bc" = f5_10,
                         "10bc" = f10_10,
                         "15bc" = f15_10,
                         "20bc" = f20_10,
                         "35bc" = f35_10,
                         "43bc" = f43_10)

saveRDS(top_10_perc_result, file = "data/sel_features/results_fabia_top_10_percent.rds")

Top 25%

f1_25 = top_x_percent(fabia_1, perct = 25, print = F)
f2_25 = top_x_percent(fabia_2, perct = 25, print = F)
f3_25 = top_x_percent(fabia_3, perct = 25, print = F)
f5_25 = top_x_percent(fabia_5, perct = 25, print = F)
f10_25 = top_x_percent(fabia_10, perct = 25, print = F)
f15_25 = top_x_percent(fabia_15, perct = 25, print = F)
f20_25 = top_x_percent(fabia_20, perct = 25, print = F)
f35_25 = top_x_percent(fabia_35, perct = 25, print = F)
f43_25 = top_x_percent(fabia_43, perct = 25, print = F)
top_25_perc_result = list("1bc" = f1_25,
                         "2bc" = f2_25,
                         "3bc" = f3_25,
                         "5bc" = f5_25,
                         "10bc" = f10_25,
                         "15bc" = f15_25,
                         "20bc" = f20_25,
                         "35bc" = f35_25,
                         "43bc" = f43_25)

saveRDS(top_25_perc_result, file = "data/sel_features/results_fabia_top_25_percent.rds")

C. Visualization of top x%

Check max and min value of loadings in order to create symmetrical plots:

max_fL = max(max(fabia_1@L),
             max(fabia_2@L),
             max(fabia_3@L),
             max(fabia_5@L),
             max(fabia_10@L),
             max(fabia_15@L),
             max(fabia_20@L),
             max(fabia_35@L),
             max(fabia_43@L)
)
min_fL = min(min(fabia_1@L),
             min(fabia_2@L),
             min(fabia_3@L),
             min(fabia_5@L),
             min(fabia_10@L),
             min(fabia_15@L),
             min(fabia_20@L),
             min(fabia_35@L),
             min(fabia_43@L)
)
c(max_fL, min_fL)
## [1]  2.059862 -1.661929

The limits of y axis will be (-2.1, 2.1) in order to make them symmetrical.

plot.fabia.topx = function(fabia_result, fabia_top5, fabia_top10, fabia_top25, bc, abs.ymax = 2.1) {
  total_bc = fabia_result@p1
  if (bc > total_bc) {
    stop("Requested bicluster number exceeds the total available biclusters.")
  }
  FABIA.L = as.data.frame(fabia_result@L)
  FABIA.L$var = rownames(FABIA.L)
  biclusterx = paste("bicluster", bc, sep = "")
  FABIA.L$top5 = FABIA.L$var %in% names(fabia_top5[[biclusterx]])
  FABIA.L$top10 = FABIA.L$var %in% names(fabia_top10[[biclusterx]])
  FABIA.L$top25 = FABIA.L$var %in% names(fabia_top25[[biclusterx]])
  FABIA.L$top = NA
  for(i in 1:nrow(FABIA.L)) {
    if (FABIA.L[i,]$top25 == F) {
      FABIA.L[i,]$top = NA
    } else if (FABIA.L[i,]$top10 == F) {
      FABIA.L[i,]$top = "Top 11% ~ 25%"
    } else if (FABIA.L[i,]$top5 == F){
      FABIA.L[i,]$top = "Top 06% ~ 10%"
    } else {
      FABIA.L[i,]$top = "Top 05%"
    }
  }
  FABIA.L$dataset = sapply(FABIA.L$var, retrieve.dataset.type)
  #FABIA.L
  ggplot(data = FABIA.L, aes_string(x= "var", y = biclusterx, color = "top", shape="dataset")) +
  geom_point() +
  #geom_text(nudge_y = .04, alpha = 1, size = 3) +
  theme(
    axis.title.x = element_blank(),
    axis.text.x = element_blank(),
    axis.ticks.x = element_blank()
  ) +
  ggtitle(paste(total_bc , "Biclusters")) +
  xlab(biclusterx) +
  ylim(-abs.ymax, abs.ymax)
  
  #if (perc5line) {
  #  perc5 = min(FABIA.L[FABIA.L$top5 == T, biclusterx])
  #  p = p + geom_hline(yintercept = perc5)
  #}
  #p
}

retrieve.dataset.type = function(var.name) {
  if (startsWith(var.name, "hsa")) {
    out = "miRNASeqGene"
  } else if (endsWith(var.name, "RPPA")) {
    out = "RPPAArray"
  } else if (endsWith(var.name, "R2Gn")) {
    out = "RNASeq2GeneNorm"
  } else {
    out = NA
  }
  out
}

1 Bicluster

plot.fabia.topx(fabia_1, f1_5, f1_10, f1_25, 1, abs.ymax = 1)
## Warning: `aes_string()` was deprecated in ggplot2 3.0.0.
## ℹ Please use tidy evaluation idioms with `aes()`.
## ℹ See also `vignette("ggplot2-in-packages")` for more information.
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_lifecycle_warnings()` to see where this warning was
## generated.

2 Biclusters

plot.fabia.topx(fabia_2, f2_5, f2_10, f2_25, 1, abs.ymax = 1)

plot.fabia.topx(fabia_2, f2_5, f2_10, f2_25, 2, abs.ymax = 1)

3 Biclusters

plot.fabia.topx(fabia_3, f3_5, f3_10, f3_25, 1, abs.ymax = 1.5)

plot.fabia.topx(fabia_3, f3_5, f3_10, f3_25, 2, abs.ymax = 1.5)

plot.fabia.topx(fabia_3, f3_5, f3_10, f3_25, 3, abs.ymax = 1.5)

5 Biclusters

plot.fabia.topx(fabia_5, f5_5, f5_10, f5_25, 1, abs.ymax = 2)

plot.fabia.topx(fabia_5, f5_5, f5_10, f5_25, 2, abs.ymax = 2)

plot.fabia.topx(fabia_5, f5_5, f5_10, f5_25, 3, abs.ymax = 2)

plot.fabia.topx(fabia_5, f5_5, f5_10, f5_25, 4, abs.ymax = 2)

plot.fabia.topx(fabia_5, f5_5, f5_10, f5_25, 5, abs.ymax = 2)

10 Biclusters

plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 1)

plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 2)

plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 3)

plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 4)

plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 5)

plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 6)

plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 7)

plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 8)

plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 9)

plot.fabia.topx(fabia_10, f10_5, f10_10, f10_25, 10)

D Hard membership by extractBic()

select.by.Bic = function(fabia.result, perct = 5, print = T, show.loading = F) {
  fabia_L = fabia.result@L
  
  out.list = vector("list", length = ncol(fabia_L))
  names(out.list) = colnames(fabia_L)
  
  for (i in 1:ncol(fabia_L)) { # Number of biclusters
    L_curr = fabia_L[,i]
    # Biclusters name start with bic entry 2l+1 to 3L
    sel = which(names(L_curr)  %in% extractBic(fabia.result)$bic[2 * ncol(fabia_L) + i][[1]])
    out.list[[i]] = L_curr[sel]
    
    if(print) {
      print(colnames(fabia_L)[i])
      if (show.loading) {
        print(L_curr[sel])
      } else {
        print(names(L_curr[sel]))
      }
    }
  }
  
  out.list
}

#boxplot(fabia_1@L)
f1_bic = select.by.Bic(fabia_1)
## [1] "bicluster1"
##  [1] "G6PD.RPPA"      "TGM2.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2"
##  [5] "hsa-mir-1197"   "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"   
##  [9] "hsa-mir-154"    "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"  
## [13] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"   
## [17] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"  
## [21] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"   
## [25] "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"   
## [29] "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [33] "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"  
## [37] "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"   
## [41] "hsa-mir-517a"   "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"   
## [45] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
## [49] "hsa-mir-668"    "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"
f2_bic = select.by.Bic(fabia_2)
## [1] "bicluster2"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "FASN.RPPA"      "TTF1.RPPA"     
##  [5] "VHL.RPPA"       "TGM2.R2Gn"      "SQSTM1.R2Gn"    "hsa-mir-1185-1"
##  [9] "hsa-mir-1185-2" "hsa-mir-1193"   "hsa-mir-1197"   "hsa-mir-1258"  
## [13] "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"   
## [17] "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [21] "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"   
## [25] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"  
## [29] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"   
## [33] "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"   
## [37] "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"   
## [41] "hsa-mir-466"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"  
## [45] "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"   
## [49] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [53] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [57] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [61] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-517a"  
## [65] "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-605"   
## [69] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
## [73] "hsa-mir-668"    "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster1"
##  [1] "FN1.R2Gn"       "CTNNB1.R2Gn"    "CCND1.R2Gn"     "hsa-mir-1185-1"
##  [5] "hsa-mir-1185-2" "hsa-mir-135b"   "hsa-mir-206"    "hsa-mir-3166"  
##  [9] "hsa-mir-3199-1" "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-376a-2"
## [13] "hsa-mir-380"    "hsa-mir-3923"   "hsa-mir-411"    "hsa-mir-433"   
## [17] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-506"   
## [21] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [25] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [29] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [33] "hsa-mir-543"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"
f3_bic = select.by.Bic(fabia_3)
## [1] "bicluster2"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "TGM2.R2Gn"      "hsa-mir-1185-1"
##  [5] "hsa-mir-1197"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-376a-2"
##  [9] "hsa-mir-380"    "hsa-mir-466"    "hsa-mir-487a"   "hsa-mir-506"   
## [13] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-3"  "hsa-mir-510"   
## [17] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [21] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-541"   
## [25] "hsa-mir-605"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
## [29] "hsa-mir-668"    "hsa-mir-770"   
## [1] "bicluster3"
##  [1] "GATA3.RPPA"     "IGFBP2.R2Gn"    "FN1.R2Gn"       "CTNNB1.R2Gn"   
##  [5] "CCND1.R2Gn"     "hsa-mir-1185-1" "hsa-mir-124-3"  "hsa-mir-135b"  
##  [9] "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-3166"   "hsa-mir-3199-1"
## [13] "hsa-mir-3655"   "hsa-mir-3923"   "hsa-mir-3926-2" "hsa-mir-411"   
## [17] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-506"    "hsa-mir-507"   
## [21] "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3" 
## [25] "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"  
## [29] "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [33] "hsa-mir-514b"   "hsa-mir-582"   
## [1] "bicluster1"
##  [1] "G6PD.RPPA"      "ERBB3.R2Gn"     "FN1.R2Gn"       "CDH2.R2Gn"     
##  [5] "CTNNB1.R2Gn"    "TGM2.R2Gn"      "CCND1.R2Gn"     "hsa-mir-1185-1"
##  [9] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-1269"   "hsa-mir-127"   
## [13] "hsa-mir-1270-2" "hsa-mir-134"    "hsa-mir-135b"   "hsa-mir-136"   
## [17] "hsa-mir-154"    "hsa-mir-206"    "hsa-mir-299"    "hsa-mir-3144"  
## [21] "hsa-mir-3166"   "hsa-mir-3199-1" "hsa-mir-323"    "hsa-mir-323b"  
## [25] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-3655"  
## [29] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [33] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [37] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-3923"  
## [41] "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-431"   
## [45] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"  
## [49] "hsa-mir-487b"   "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"   
## [53] "hsa-mir-510"    "hsa-mir-517a"   "hsa-mir-520a"   "hsa-mir-539"   
## [57] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-654"   
## [61] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [65] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"
f5_bic = select.by.Bic(fabia_5)
## [1] "bicluster2"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "INPP4B.RPPA"    "TTF1.RPPA"     
##  [5] "PRDX1.RPPA"     "G6PD.R2Gn"      "TGM2.R2Gn"      "SQSTM1.R2Gn"   
##  [9] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"   "hsa-mir-1197"  
## [13] "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-146a"  
## [17] "hsa-mir-154"    "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"  
## [21] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"   
## [25] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"  
## [29] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"   
## [33] "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"   
## [37] "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [41] "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"  
## [45] "hsa-mir-489"    "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"   
## [49] "hsa-mir-496"    "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"  
## [53] "hsa-mir-518b"   "hsa-mir-518f"   "hsa-mir-539"    "hsa-mir-541"   
## [57] "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-605"    "hsa-mir-653"   
## [61] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
## [65] "hsa-mir-668"    "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-876"   
## [69] "hsa-mir-889"   
## [1] "bicluster5"
##  [1] "FASN.RPPA"      "FN1.R2Gn"       "CTNNB1.R2Gn"    "CCND1.R2Gn"    
##  [5] "hsa-mir-1258"   "hsa-mir-135b"   "hsa-mir-2114"   "hsa-mir-3166"  
##  [9] "hsa-mir-3199-1" "hsa-mir-3923"   "hsa-mir-3926-2" "hsa-mir-506"   
## [13] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [17] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [21] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [25] "hsa-mir-514-3"  "hsa-mir-514b"  
## [1] "bicluster1"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "TSC1.RPPA"      "TTF1.RPPA"     
##  [5] "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "TGM2.R2Gn"      "hsa-mir-1185-1"
##  [9] "hsa-mir-1185-2" "hsa-mir-1193"   "hsa-mir-1197"   "hsa-mir-1258"  
## [13] "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"   
## [17] "hsa-mir-2114"   "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"  
## [21] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"   
## [25] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"  
## [29] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"   
## [33] "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-3909"   "hsa-mir-3922"  
## [37] "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"   
## [41] "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-466"   
## [45] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-493"   
## [49] "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-506"   
## [53] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [57] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [61] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [65] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-517a"   "hsa-mir-539"   
## [69] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-585"    "hsa-mir-605"   
## [73] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
## [77] "hsa-mir-668"    "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster4"
##  [1] "G6PD.RPPA"      "IGFBP2.R2Gn"    "FN1.R2Gn"       "CCND1.R2Gn"    
##  [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1269"   "hsa-mir-2114"  
##  [9] "hsa-mir-3923"   "hsa-mir-411"    "hsa-mir-485"    "hsa-mir-487a"  
## [13] "hsa-mir-494"    "hsa-mir-507"    "hsa-mir-509-2"  "hsa-mir-510"   
## [17] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-543"   
## [21] "hsa-mir-655"    "hsa-mir-656"   
## [1] "bicluster3"
##  [1] "TGM2.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
##  [5] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-380"    "hsa-mir-411"   
##  [9] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-516a-1"
## [13] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [17] "hsa-mir-519a-2" "hsa-mir-520a"   "hsa-mir-541"    "hsa-mir-655"   
## [21] "hsa-mir-656"    "hsa-mir-668"
f10_bic = select.by.Bic(fabia_10)
## [1] "bicluster9"
##  [1] "G6PD.RPPA"      "BRCA2.RPPA"     "FASN.RPPA"      "INPP4B.RPPA"   
##  [5] "TTF1.RPPA"      "VHL.RPPA"       "PRDX1.RPPA"     "G6PD.R2Gn"     
##  [9] "MET.R2Gn"       "FASN.R2Gn"      "TGM2.R2Gn"      "PXN.R2Gn"      
## [13] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"  
## [17] "hsa-mir-1197"   "hsa-mir-1258"   "hsa-mir-1269"   "hsa-mir-127"   
## [21] "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-146a"   "hsa-mir-153-1" 
## [25] "hsa-mir-154"    "hsa-mir-196a-2" "hsa-mir-205"    "hsa-mir-216b"  
## [29] "hsa-mir-224"    "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"  
## [33] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"   
## [37] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"  
## [41] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"   
## [45] "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"   
## [49] "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [53] "hsa-mir-433"    "hsa-mir-452"    "hsa-mir-466"    "hsa-mir-485"   
## [57] "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-489"    "hsa-mir-493"   
## [61] "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-506"   
## [65] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-510"    "hsa-mir-513a-1"
## [69] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [73] "hsa-mir-514-2"  "hsa-mir-516a-2" "hsa-mir-517a"   "hsa-mir-518b"  
## [77] "hsa-mir-518f"   "hsa-mir-520a"   "hsa-mir-539"    "hsa-mir-541"   
## [81] "hsa-mir-543"    "hsa-mir-548v"   "hsa-mir-577"    "hsa-mir-605"   
## [85] "hsa-mir-615"    "hsa-mir-653"    "hsa-mir-654"    "hsa-mir-655"   
## [89] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-758"   
## [93] "hsa-mir-770"    "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-889"   
## [1] "bicluster10"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "FASN.RPPA"      "TSC1.RPPA"     
##  [5] "TTF1.RPPA"      "VHL.RPPA"       "AR.RPPA"        "TFRC.RPPA"     
##  [9] "AKT1S1.R2Gn"    "IGFBP2.R2Gn"    "AKT2.R2Gn"      "GATA3.R2Gn"    
## [13] "FASN.R2Gn"      "CTNNB1.R2Gn"    "TGM2.R2Gn"      "CCND1.R2Gn"    
## [17] "PIK3R1.R2Gn"    "PXN.R2Gn"       "RPTOR.R2Gn"     "SQSTM1.R2Gn"   
## [21] "hsa-mir-1185-1" "hsa-mir-1193"   "hsa-mir-1197"   "hsa-mir-1258"  
## [25] "hsa-mir-127"    "hsa-mir-1291"   "hsa-mir-134"    "hsa-mir-136"   
## [29] "hsa-mir-154"    "hsa-mir-2114"   "hsa-mir-3166"   "hsa-mir-323"   
## [33] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"   
## [37] "hsa-mir-3655"   "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1"
## [41] "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-377"    "hsa-mir-380"   
## [45] "hsa-mir-382"    "hsa-mir-3909"   "hsa-mir-3922"   "hsa-mir-3926-2"
## [49] "hsa-mir-410"    "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [53] "hsa-mir-466"    "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-493"   
## [57] "hsa-mir-496"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [61] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [65] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [69] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [73] "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-552"    "hsa-mir-585"   
## [77] "hsa-mir-605"    "hsa-mir-615"    "hsa-mir-653"    "hsa-mir-654"   
## [81] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [85] "hsa-mir-770"    "hsa-mir-876"    "hsa-mir-889"    "hsa-mir-891a"  
## [1] "bicluster7"
##  [1] "RBM15.RPPA"     "GATA3.RPPA"     "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [5] "GATA3.R2Gn"     "CTNNB1.R2Gn"    "CCND1.R2Gn"     "hsa-mir-1185-1"
##  [9] "hsa-mir-1185-2" "hsa-mir-124-3"  "hsa-mir-1269"   "hsa-mir-135b"  
## [13] "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-296"    "hsa-mir-3144"  
## [17] "hsa-mir-3166"   "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-3655"  
## [21] "hsa-mir-3923"   "hsa-mir-3926-2" "hsa-mir-411"    "hsa-mir-429"   
## [25] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-506"   
## [29] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [33] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [37] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [41] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-543"    "hsa-mir-548q"  
## [45] "hsa-mir-582"    "hsa-mir-655"    "hsa-mir-656"   
## [1] "bicluster2"
##  [1] "G6PD.RPPA"      "GATA3.RPPA"     "G6PD.R2Gn"      "FN1.R2Gn"      
##  [5] "CTNNB1.R2Gn"    "TGM2.R2Gn"      "CCND1.R2Gn"     "hsa-mir-1185-1"
##  [9] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-127"    "hsa-mir-134"   
## [13] "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-206"    "hsa-mir-299"   
## [17] "hsa-mir-3193"   "hsa-mir-3199-1" "hsa-mir-323"    "hsa-mir-323b"  
## [21] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"   
## [25] "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"  
## [29] "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"   
## [33] "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"   
## [37] "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [41] "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"  
## [45] "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"   
## [49] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [53] "hsa-mir-518c"   "hsa-mir-518f"   "hsa-mir-520a"   "hsa-mir-526b"  
## [57] "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-577"   
## [61] "hsa-mir-580"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [65] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-758"    "hsa-mir-770"   
## [69] "hsa-mir-889"   
## [1] "bicluster1"
##  [1] "G6PD.RPPA"      "FN1.R2Gn"       "TGM2.R2Gn"      "hsa-mir-1185-1"
##  [5] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-127"    "hsa-mir-134"   
##  [9] "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-299"    "hsa-mir-323"   
## [13] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"   
## [17] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [21] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [25] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"   
## [29] "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"   
## [33] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"  
## [37] "hsa-mir-487b"   "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"   
## [41] "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-654"   
## [45] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [49] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster3"
##  [1] "TGM2.R2Gn"      "hsa-mir-1185-1" "hsa-mir-329-1"  "hsa-mir-329-2" 
##  [5] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-510"   
##  [9] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513c"   "hsa-mir-514b"  
## [13] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-656"   
## [1] "bicluster8"
##  [1] "G6PD.RPPA"      "ERBB3.R2Gn"     "TGM2.R2Gn"      "hsa-mir-1185-1"
##  [5] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-1269"   "hsa-mir-127"   
##  [9] "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-206"   
## [13] "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [17] "hsa-mir-329-2"  "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1"
## [21] "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"   
## [25] "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"   
## [29] "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-432"   
## [33] "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"  
## [37] "hsa-mir-494"    "hsa-mir-496"    "hsa-mir-517a"   "hsa-mir-539"   
## [41] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-654"    "hsa-mir-655"   
## [45] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-758"   
## [49] "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster6"
## [1] "FASN.RPPA"    "hsa-mir-3934" "hsa-mir-466"  "hsa-mir-510"  "hsa-mir-605" 
## [1] "bicluster5"
## character(0)
## [1] "bicluster4"
## [1] "G6PD.RPPA"
f15_bic = select.by.Bic(fabia_15)
## [1] "bicluster10"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "PTEN.RPPA"      "ATM.RPPA"      
##  [5] "FASN.RPPA"      "TSC1.RPPA"      "VHL.RPPA"       "TFRC.RPPA"     
##  [9] "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "AKT2.R2Gn"      "CDH2.R2Gn"     
## [13] "FASN.R2Gn"      "CTNNB1.R2Gn"    "PIK3R1.R2Gn"    "GAPDH.R2Gn"    
## [17] "PXN.R2Gn"       "RPTOR.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1185-2"
## [21] "hsa-mir-1193"   "hsa-mir-1197"   "hsa-mir-1224"   "hsa-mir-1258"  
## [25] "hsa-mir-127"    "hsa-mir-1291"   "hsa-mir-136"    "hsa-mir-154"   
## [29] "hsa-mir-2114"   "hsa-mir-3166"   "hsa-mir-3199-1" "hsa-mir-320c-2"
## [33] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [37] "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1"
## [41] "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-377"    "hsa-mir-380"   
## [45] "hsa-mir-382"    "hsa-mir-3909"   "hsa-mir-3922"   "hsa-mir-3923"  
## [49] "hsa-mir-3926-2" "hsa-mir-410"    "hsa-mir-412"    "hsa-mir-431"   
## [53] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-466"    "hsa-mir-487a"  
## [57] "hsa-mir-487b"   "hsa-mir-490"    "hsa-mir-493"    "hsa-mir-496"   
## [61] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [65] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [69] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [73] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-539"   
## [77] "hsa-mir-541"    "hsa-mir-552"    "hsa-mir-585"    "hsa-mir-605"   
## [81] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
## [85] "hsa-mir-668"    "hsa-mir-767"    "hsa-mir-770"    "hsa-mir-876"   
## [89] "hsa-mir-889"    "hsa-mir-891a"  
## [1] "bicluster9"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "FASN.RPPA"      "INPP4B.RPPA"   
##  [5] "TTF1.RPPA"      "VHL.RPPA"       "PRDX1.RPPA"     "G6PD.R2Gn"     
##  [9] "TGM2.R2Gn"      "CTNNA1.R2Gn"    "PIK3R1.R2Gn"    "BCL2L1.R2Gn"   
## [13] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
## [17] "hsa-mir-1269"   "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"   
## [21] "hsa-mir-154"    "hsa-mir-216b"   "hsa-mir-299"    "hsa-mir-323"   
## [25] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"   
## [29] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [33] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [37] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"   
## [41] "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"   
## [45] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-466"    "hsa-mir-485"   
## [49] "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-489"    "hsa-mir-493"   
## [53] "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-506"   
## [57] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-510"    "hsa-mir-513a-1"
## [61] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-516a-1"
## [65] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [69] "hsa-mir-520a"   "hsa-mir-526b"   "hsa-mir-539"    "hsa-mir-541"   
## [73] "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-654"    "hsa-mir-655"   
## [77] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-758"   
## [81] "hsa-mir-770"    "hsa-mir-876"    "hsa-mir-889"   
## [1] "bicluster13"
##   [1] "G6PD.RPPA"      "RBM15.RPPA"     "FASN.RPPA"      "INPP4B.RPPA"   
##   [5] "TTF1.RPPA"      "PRDX1.RPPA"     "G6PD.R2Gn"      "AKT1S1.R2Gn"   
##   [9] "IGFBP2.R2Gn"    "FN1.R2Gn"       "AKT2.R2Gn"      "TGM2.R2Gn"     
##  [13] "COL6A1.R2Gn"    "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2"
##  [17] "hsa-mir-1193"   "hsa-mir-1197"   "hsa-mir-127"    "hsa-mir-134"   
##  [21] "hsa-mir-136"    "hsa-mir-146a"   "hsa-mir-154"    "hsa-mir-184"   
##  [25] "hsa-mir-205"    "hsa-mir-206"    "hsa-mir-299"    "hsa-mir-323"   
##  [29] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"   
##  [33] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
##  [37] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
##  [41] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-3922"  
##  [45] "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"   
##  [49] "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-466"   
##  [53] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-493"   
##  [57] "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-506"   
##  [61] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
##  [65] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
##  [69] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
##  [73] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-516a-1" "hsa-mir-516a-2"
##  [77] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-518f"  
##  [81] "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"   "hsa-mir-526b"  
##  [85] "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-552"   
##  [89] "hsa-mir-585"    "hsa-mir-605"    "hsa-mir-615"    "hsa-mir-653"   
##  [93] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
##  [97] "hsa-mir-668"    "hsa-mir-758"    "hsa-mir-767"    "hsa-mir-770"   
## [101] "hsa-mir-889"    "hsa-mir-891a"  
## [1] "bicluster2"
##  [1] "G6PD.RPPA"      "TTF1.RPPA"      "G6PD.R2Gn"      "ERBB3.R2Gn"    
##  [5] "CTNNB1.R2Gn"    "TGM2.R2Gn"      "CCND1.R2Gn"     "SQSTM1.R2Gn"   
##  [9] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-124-1" 
## [13] "hsa-mir-124-3"  "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-135b"  
## [17] "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-206"    "hsa-mir-299"   
## [21] "hsa-mir-3166"   "hsa-mir-3193"   "hsa-mir-3199-1" "hsa-mir-323"   
## [25] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"   
## [29] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [33] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [37] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"   
## [41] "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"   
## [45] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"  
## [49] "hsa-mir-487b"   "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"   
## [53] "hsa-mir-496"    "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a"  
## [57] "hsa-mir-518b"   "hsa-mir-518c"   "hsa-mir-520a"   "hsa-mir-539"   
## [61] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-580"   
## [65] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
## [69] "hsa-mir-668"    "hsa-mir-670"    "hsa-mir-758"    "hsa-mir-770"   
## [73] "hsa-mir-889"    "hsa-mir-935"   
## [1] "bicluster11"
##  [1] "GATA3.RPPA"     "ERBB3.R2Gn"     "FN1.R2Gn"       "GATA3.R2Gn"    
##  [5] "CTNNB1.R2Gn"    "CCND1.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1185-2"
##  [9] "hsa-mir-124-3"  "hsa-mir-135b"   "hsa-mir-206"    "hsa-mir-296"   
## [13] "hsa-mir-3166"   "hsa-mir-3199-1" "hsa-mir-323b"   "hsa-mir-329-1" 
## [17] "hsa-mir-3655"   "hsa-mir-380"    "hsa-mir-3923"   "hsa-mir-3926-2"
## [21] "hsa-mir-411"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"   
## [25] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [29] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [33] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [37] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-516a-1"
## [41] "hsa-mir-516a-2" "hsa-mir-517a"   "hsa-mir-519a-2" "hsa-mir-520a"  
## [45] "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-541"    "hsa-mir-543"   
## [49] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"   
## [1] "bicluster1"
##  [1] "G6PD.RPPA"      "TGM2.R2Gn"      "hsa-mir-1185-1" "hsa-mir-1185-2"
##  [5] "hsa-mir-1197"   "hsa-mir-124-3"  "hsa-mir-127"    "hsa-mir-134"   
##  [9] "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-299"    "hsa-mir-323"   
## [13] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"   
## [17] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [21] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [25] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"   
## [29] "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-431"    "hsa-mir-432"   
## [33] "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"  
## [37] "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-539"   
## [41] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-654"   
## [45] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [49] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster12"
##  [1] "IGFBP2.RPPA"    "IGFBP2.R2Gn"    "FN1.R2Gn"       "GATA3.R2Gn"    
##  [5] "CTNNB1.R2Gn"    "CCND1.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1185-2"
##  [9] "hsa-mir-124-3"  "hsa-mir-1269"   "hsa-mir-135b"   "hsa-mir-206"   
## [13] "hsa-mir-2114"   "hsa-mir-296"    "hsa-mir-3144"   "hsa-mir-3166"  
## [17] "hsa-mir-3199-1" "hsa-mir-329-1"  "hsa-mir-3655"   "hsa-mir-3923"  
## [21] "hsa-mir-3926-2" "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-485"   
## [25] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-506"    "hsa-mir-507"   
## [29] "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3" 
## [33] "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"  
## [37] "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [41] "hsa-mir-514b"   "hsa-mir-543"    "hsa-mir-548q"   "hsa-mir-655"   
## [45] "hsa-mir-656"   
## [1] "bicluster7"
##  [1] "GATA3.RPPA"     "FN1.R2Gn"       "GATA3.R2Gn"     "CTNNB1.R2Gn"   
##  [5] "CCND1.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-124-3" 
##  [9] "hsa-mir-1269"   "hsa-mir-135b"   "hsa-mir-206"    "hsa-mir-2114"  
## [13] "hsa-mir-296"    "hsa-mir-3166"   "hsa-mir-3199-1" "hsa-mir-320c-2"
## [17] "hsa-mir-3655"   "hsa-mir-3923"   "hsa-mir-3926-2" "hsa-mir-411"   
## [21] "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"   
## [25] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [29] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [33] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [37] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-543"   
## [41] "hsa-mir-548q"   "hsa-mir-582"    "hsa-mir-655"    "hsa-mir-656"   
## [45] "hsa-mir-668"   
## [1] "bicluster15"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "FASN.RPPA"      "TTF1.RPPA"     
##  [5] "VHL.RPPA"       "AKT2.R2Gn"      "ANXA1.R2Gn"     "PXN.R2Gn"      
##  [9] "SQSTM1.R2Gn"    "hsa-mir-1258"   "hsa-mir-196a-2" "hsa-mir-196b"  
## [13] "hsa-mir-2114"   "hsa-mir-329-2"  "hsa-mir-3926-2" "hsa-mir-466"   
## [17] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [21] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [25] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [29] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-552"   
## [33] "hsa-mir-605"    "hsa-mir-615"    "hsa-mir-656"    "hsa-mir-665"   
## [37] "hsa-mir-876"   
## [1] "bicluster8"
## [1] "G6PD.RPPA"      "ERBB3.R2Gn"     "ERRFI1.R2Gn"    "hsa-mir-1185-1"
## [5] "hsa-mir-656"   
## [1] "bicluster3"
## [1] "ERBB3.R2Gn"     "hsa-mir-192"    "hsa-mir-194-1"  "hsa-mir-194-2" 
## [5] "hsa-mir-3170"   "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [1] "bicluster14"
##  [1] "CTNNB1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1269"  
##  [5] "hsa-mir-329-1"  "hsa-mir-411"    "hsa-mir-433"    "hsa-mir-485"   
##  [9] "hsa-mir-487a"   "hsa-mir-517a"   "hsa-mir-541"    "hsa-mir-655"   
## [13] "hsa-mir-656"    "hsa-mir-668"   
## [1] "bicluster5"
## [1] "GAPDH.R2Gn"
## [1] "bicluster6"
## [1] "FASN.RPPA"   "hsa-mir-605"
## [1] "bicluster4"
## character(0)
f20_bic = select.by.Bic(fabia_20)
## [1] "bicluster10"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "PTEN.RPPA"      "ATM.RPPA"      
##  [5] "FASN.RPPA"      "TSC1.RPPA"      "TTF1.RPPA"      "VHL.RPPA"      
##  [9] "PRDX1.RPPA"     "GAPDH.RPPA"     "MSH6.RPPA"      "TFRC.RPPA"     
## [13] "PREX1.RPPA"     "FN1.R2Gn"       "PEA15.R2Gn"     "XRCC5.R2Gn"    
## [17] "FASN.R2Gn"      "CTNNB1.R2Gn"    "YBX1.R2Gn"      "PRKCA.R2Gn"    
## [21] "STMN1.R2Gn"     "PIK3R1.R2Gn"    "PRDX1.R2Gn"     "GAPDH.R2Gn"    
## [25] "ANXA1.R2Gn"     "HSPA1A.R2Gn"    "PXN.R2Gn"       "hsa-mir-105-1" 
## [29] "hsa-mir-105-2"  "hsa-mir-1185-1" "hsa-mir-1224"   "hsa-mir-1258"  
## [33] "hsa-mir-1293"   "hsa-mir-135b"   "hsa-mir-199a-1" "hsa-mir-199a-2"
## [37] "hsa-mir-199b"   "hsa-mir-2114"   "hsa-mir-214"    "hsa-mir-3166"  
## [41] "hsa-mir-320c-2" "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-33b"   
## [45] "hsa-mir-376a-1" "hsa-mir-3909"   "hsa-mir-3922"   "hsa-mir-3923"  
## [49] "hsa-mir-3926-2" "hsa-mir-3940"   "hsa-mir-466"    "hsa-mir-490"   
## [53] "hsa-mir-493"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [57] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [61] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [65] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [69] "hsa-mir-544"    "hsa-mir-585"    "hsa-mir-605"    "hsa-mir-653"   
## [73] "hsa-mir-656"    "hsa-mir-664"    "hsa-mir-665"    "hsa-mir-767"   
## [77] "hsa-mir-770"    "hsa-mir-876"   
## [1] "bicluster9"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "GATA3.RPPA"     "FASN.RPPA"     
##  [5] "INPP4B.RPPA"    "TTF1.RPPA"      "VHL.RPPA"       "PRDX1.RPPA"    
##  [9] "G6PD.R2Gn"      "ADAR.R2Gn"      "CTNNB1.R2Gn"    "TGM2.R2Gn"     
## [13] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
## [17] "hsa-mir-1269"   "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"   
## [21] "hsa-mir-146a"   "hsa-mir-154"    "hsa-mir-206"    "hsa-mir-216b"  
## [25] "hsa-mir-217"    "hsa-mir-224"    "hsa-mir-299"    "hsa-mir-3199-1"
## [29] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [33] "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1"
## [37] "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"   
## [41] "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"   
## [45] "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"   
## [49] "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-452"   
## [53] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-489"   
## [57] "hsa-mir-493"    "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"   
## [61] "hsa-mir-516a-1" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [65] "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-539"    "hsa-mir-541"   
## [69] "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-580"    "hsa-mir-653"   
## [73] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
## [77] "hsa-mir-668"    "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-873"   
## [81] "hsa-mir-876"    "hsa-mir-889"   
## [1] "bicluster19"
##  [1] "G6PD.RPPA"      "INPP4B.RPPA"    "FN1.R2Gn"       "ADAR.R2Gn"     
##  [5] "CTNNB1.R2Gn"    "TGM2.R2Gn"      "SQSTM1.R2Gn"    "hsa-mir-1185-1"
##  [9] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-1269"   "hsa-mir-127"   
## [13] "hsa-mir-133b"   "hsa-mir-134"    "hsa-mir-135b"   "hsa-mir-136"   
## [17] "hsa-mir-154"    "hsa-mir-205"    "hsa-mir-206"    "hsa-mir-299"   
## [21] "hsa-mir-3193"   "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [25] "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-3655"   "hsa-mir-3678"  
## [29] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [33] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [37] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-409"   
## [41] "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"    "hsa-mir-431"   
## [45] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"  
## [49] "hsa-mir-487b"   "hsa-mir-489"    "hsa-mir-493"    "hsa-mir-494"   
## [53] "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-516a-1" "hsa-mir-516a-2"
## [57] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-518c"  
## [61] "hsa-mir-518f"   "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"  
## [65] "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-539"    "hsa-mir-541"   
## [69] "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-580"    "hsa-mir-654"   
## [73] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"   
## [77] "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster1"
##  [1] "G6PD.RPPA"      "TTF1.RPPA"      "CTNNB1.R2Gn"    "TGM2.R2Gn"     
##  [5] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"  
##  [9] "hsa-mir-124-3"  "hsa-mir-127"    "hsa-mir-1270-2" "hsa-mir-134"   
## [13] "hsa-mir-136"    "hsa-mir-138-1"  "hsa-mir-154"    "hsa-mir-299"   
## [17] "hsa-mir-3193"   "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [21] "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"   
## [25] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"  
## [29] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"   
## [33] "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"   
## [37] "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"   
## [41] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-493"   
## [45] "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-539"   
## [49] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-577"    "hsa-mir-580"   
## [53] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
## [57] "hsa-mir-668"    "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster2"
##  [1] "TGM2.R2Gn"      "PIK3R1.R2Gn"    "BCL2L1.R2Gn"    "SQSTM1.R2Gn"   
##  [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-124-1" 
##  [9] "hsa-mir-124-3"  "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"   
## [13] "hsa-mir-154"    "hsa-mir-206"    "hsa-mir-299"    "hsa-mir-3173"  
## [17] "hsa-mir-3193"   "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [21] "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-369"    "hsa-mir-370"   
## [25] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"  
## [29] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"   
## [33] "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"   
## [37] "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"   
## [41] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-494"   
## [45] "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-516a-1" "hsa-mir-516a-2"
## [49] "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-518c"   "hsa-mir-520a"  
## [53] "hsa-mir-526b"   "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"   
## [57] "hsa-mir-580"    "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"   
## [61] "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-670"    "hsa-mir-758"   
## [65] "hsa-mir-770"    "hsa-mir-873"    "hsa-mir-889"   
## [1] "bicluster16"
##  [1] "FASN.RPPA"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "ERRFI1.R2Gn"   
##  [5] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"   "hsa-mir-1197"  
##  [9] "hsa-mir-1245"   "hsa-mir-200b"   "hsa-mir-323"    "hsa-mir-323b"  
## [13] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-376a-1" "hsa-mir-380"   
## [17] "hsa-mir-3922"   "hsa-mir-410"    "hsa-mir-412"    "hsa-mir-431"   
## [21] "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-466"    "hsa-mir-487a"  
## [25] "hsa-mir-487b"   "hsa-mir-488"    "hsa-mir-493"    "hsa-mir-496"   
## [29] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [33] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [37] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [41] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-541"   
## [45] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-770"   
## [1] "bicluster17"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "PTEN.RPPA"      "FASN.RPPA"     
##  [5] "TSC1.RPPA"      "PDCD4.RPPA"     "VHL.RPPA"       "GATA3.R2Gn"    
##  [9] "PEA15.R2Gn"     "ADAR.R2Gn"      "CTNNB1.R2Gn"    "SHC1.R2Gn"     
## [13] "CCND1.R2Gn"     "PXN.R2Gn"       "hsa-mir-124-3"  "hsa-mir-1258"  
## [17] "hsa-mir-135b"   "hsa-mir-2114"   "hsa-mir-3166"   "hsa-mir-3199-1"
## [21] "hsa-mir-320c-2" "hsa-mir-329-2"  "hsa-mir-3926-2" "hsa-mir-466"   
## [25] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [29] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [33] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [37] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-605"   
## [41] "hsa-mir-767"   
## [1] "bicluster15"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "PTEN.RPPA"      "FASN.RPPA"     
##  [5] "TSC1.RPPA"      "TTF1.RPPA"      "VHL.RPPA"       "AR.RPPA"       
##  [9] "PRDX1.RPPA"     "MSH6.RPPA"      "PREX1.RPPA"     "G6PD.R2Gn"     
## [13] "MET.R2Gn"       "FASN.R2Gn"      "TGM2.R2Gn"      "PIK3R1.R2Gn"   
## [17] "ANXA1.R2Gn"     "PXN.R2Gn"       "SQSTM1.R2Gn"    "hsa-mir-1185-1"
## [21] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-1258"   "hsa-mir-127"   
## [25] "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-154"    "hsa-mir-196a-2"
## [29] "hsa-mir-196b"   "hsa-mir-2114"   "hsa-mir-216b"   "hsa-mir-218-1" 
## [33] "hsa-mir-299"    "hsa-mir-3170"   "hsa-mir-3173"   "hsa-mir-323"   
## [37] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"   
## [41] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [45] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [49] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-3926-2"
## [53] "hsa-mir-3940"   "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"   
## [57] "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-466"   
## [61] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-489"   
## [65] "hsa-mir-494"    "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-506"   
## [69] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [73] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [77] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [81] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-539"    "hsa-mir-541"   
## [85] "hsa-mir-543"    "hsa-mir-605"    "hsa-mir-615"    "hsa-mir-653"   
## [89] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
## [93] "hsa-mir-668"    "hsa-mir-758"    "hsa-mir-770"    "hsa-mir-873"   
## [97] "hsa-mir-876"    "hsa-mir-889"   
## [1] "bicluster13"
##  [1] "FASN.RPPA"      "FN1.R2Gn"       "TGM2.R2Gn"      "COL6A1.R2Gn"   
##  [5] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1193"  
##  [9] "hsa-mir-1197"   "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"   
## [13] "hsa-mir-154"    "hsa-mir-184"    "hsa-mir-299"    "hsa-mir-323"   
## [17] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"   
## [21] "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [25] "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"    "hsa-mir-379"   
## [29] "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-3922"  
## [33] "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"   
## [37] "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-466"   
## [41] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-494"   
## [45] "hsa-mir-496"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [49] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [53] "hsa-mir-511-1"  "hsa-mir-511-2"  "hsa-mir-513a-1" "hsa-mir-513a-2"
## [57] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [61] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-516a-2" "hsa-mir-518b"  
## [65] "hsa-mir-518f"   "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"   
## [69] "hsa-mir-605"    "hsa-mir-653"    "hsa-mir-654"    "hsa-mir-655"   
## [73] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-758"   
## [77] "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster7"
##  [1] "GATA3.RPPA"     "EGFR.RPPA"      "TSC1.RPPA"      "TFRC.RPPA"     
##  [5] "FN1.R2Gn"       "CDH2.R2Gn"      "CTNNB1.R2Gn"    "CCND1.R2Gn"    
##  [9] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-124-1"  "hsa-mir-124-3" 
## [13] "hsa-mir-1269"   "hsa-mir-135b"   "hsa-mir-139"    "hsa-mir-206"   
## [17] "hsa-mir-2114"   "hsa-mir-296"    "hsa-mir-3166"   "hsa-mir-3199-1"
## [21] "hsa-mir-320c-2" "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-3655"  
## [25] "hsa-mir-3923"   "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-433"   
## [29] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-506"   
## [33] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [37] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [41] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [45] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-543"    "hsa-mir-548j"  
## [49] "hsa-mir-582"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"   
## [1] "bicluster20"
##  [1] "ERBB3.R2Gn"     "FN1.R2Gn"       "hsa-mir-1185-1" "hsa-mir-135b"  
##  [5] "hsa-mir-3923"   "hsa-mir-3926-2" "hsa-mir-507"    "hsa-mir-510"   
##  [9] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-656"   
## [1] "bicluster12"
##  [1] "RBM15.RPPA"     "TFRC.RPPA"      "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [5] "GATA3.R2Gn"     "EEF2.R2Gn"      "CTNNB1.R2Gn"    "CCND1.R2Gn"    
##  [9] "hsa-mir-1258"   "hsa-mir-135b"   "hsa-mir-2114"   "hsa-mir-3166"  
## [13] "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-3655"   "hsa-mir-3923"  
## [17] "hsa-mir-429"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [21] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [25] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [29] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [1] "bicluster11"
##  [1] "GATA3.RPPA"     "EGFR.RPPA"      "CTNNB1.R2Gn"    "CCND1.R2Gn"    
##  [5] "hsa-mir-1185-1" "hsa-mir-135b"   "hsa-mir-206"    "hsa-mir-3166"  
##  [9] "hsa-mir-3199-1" "hsa-mir-411"    "hsa-mir-485"    "hsa-mir-487a"  
## [13] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [17] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [21] "hsa-mir-513a-2" "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [25] "hsa-mir-514b"   "hsa-mir-516a-1" "hsa-mir-525"    "hsa-mir-580"   
## [29] "hsa-mir-655"    "hsa-mir-656"   
## [1] "bicluster14"
##  [1] "G6PD.RPPA"     "ATM.RPPA"      "GAPDH.RPPA"    "ERBB3.R2Gn"   
##  [5] "FN1.R2Gn"      "GAPDH.R2Gn"    "hsa-mir-105-1" "hsa-mir-1269" 
##  [9] "hsa-mir-200b"  "hsa-mir-214"   "hsa-mir-517a"  "hsa-mir-552"  
## [13] "hsa-mir-767"  
## [1] "bicluster18"
##  [1] "ERBB3.R2Gn"     "GATA3.R2Gn"     "GAPDH.R2Gn"     "hsa-mir-3170"  
##  [5] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
##  [9] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [13] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [17] "hsa-mir-514-3"  "hsa-mir-514b"  
## [1] "bicluster5"
## [1] "ATM.RPPA"    "GAPDH.RPPA"  "ADAR.R2Gn"   "CTNNB1.R2Gn" "GAPDH.R2Gn" 
## [1] "bicluster6"
##  [1] "G6PD.RPPA"    "RBM15.RPPA"   "ATM.RPPA"     "FASN.RPPA"    "MSH6.RPPA"   
##  [6] "TFRC.RPPA"    "FN1.R2Gn"     "hsa-mir-135b" "hsa-mir-605"  "hsa-mir-876" 
## [1] "bicluster3"
##  [1] "ERBB3.R2Gn"     "ADAR.R2Gn"      "hsa-mir-1185-1" "hsa-mir-516a-1"
##  [5] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
##  [9] "hsa-mir-519a-2" "hsa-mir-656"   
## [1] "bicluster8"
## [1] "ERBB3.R2Gn"  "FN1.R2Gn"    "ERRFI1.R2Gn" "hsa-mir-552"
## [1] "bicluster4"
## [1] "G6PD.RPPA" "FN1.R2Gn"
f35_bic = select.by.Bic(fabia_35)
## [1] "bicluster21"
##  [1] "G6PD.RPPA"      "RBM15.RPPA"     "PTEN.RPPA"      "FASN.RPPA"     
##  [5] "VHL.RPPA"       "TFRC.RPPA"      "AKT1S1.R2Gn"    "IGFBP2.R2Gn"   
##  [9] "FN1.R2Gn"       "CDH2.R2Gn"      "GATA3.R2Gn"     "RPS6.R2Gn"     
## [13] "PXN.R2Gn"       "SYP.R2Gn"       "hsa-mir-1185-1" "hsa-mir-1193"  
## [17] "hsa-mir-124-1"  "hsa-mir-124-3"  "hsa-mir-1258"   "hsa-mir-1291"  
## [21] "hsa-mir-135b"   "hsa-mir-153-1"  "hsa-mir-153-2"  "hsa-mir-26a-1" 
## [25] "hsa-mir-3166"   "hsa-mir-3191"   "hsa-mir-3199-1" "hsa-mir-320c-2"
## [29] "hsa-mir-329-2"  "hsa-mir-3655"   "hsa-mir-3682"   "hsa-mir-3690"  
## [33] "hsa-mir-376a-2" "hsa-mir-383"    "hsa-mir-3909"   "hsa-mir-3923"  
## [37] "hsa-mir-3926-2" "hsa-mir-3934"   "hsa-mir-412"    "hsa-mir-432"   
## [41] "hsa-mir-433"    "hsa-mir-466"    "hsa-mir-493"    "hsa-mir-499"   
## [45] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [49] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [53] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [57] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-516a-1"
## [61] "hsa-mir-519a-2" "hsa-mir-544"    "hsa-mir-548s"   "hsa-mir-548v"  
## [65] "hsa-mir-550a-2" "hsa-mir-552"    "hsa-mir-580"    "hsa-mir-581"   
## [69] "hsa-mir-585"    "hsa-mir-592"    "hsa-mir-605"    "hsa-mir-639"   
## [73] "hsa-mir-653"    "hsa-mir-676"    "hsa-mir-767"    "hsa-mir-770"   
## [1] "bicluster19"
##  [1] "ASNS.RPPA"      "INPP4B.RPPA"    "CDK1.RPPA"      "MYH11.RPPA"    
##  [5] "ERBB3.R2Gn"     "FN1.R2Gn"       "CTNNB1.R2Gn"    "TGM2.R2Gn"     
##  [9] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-1269"  
## [13] "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"    "hsa-mir-138-1" 
## [17] "hsa-mir-146a"   "hsa-mir-154"    "hsa-mir-205"    "hsa-mir-206"   
## [21] "hsa-mir-299"    "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1" 
## [25] "hsa-mir-329-2"  "hsa-mir-3655"   "hsa-mir-369"    "hsa-mir-370"   
## [29] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"  
## [33] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"   
## [37] "hsa-mir-382"    "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-3940"  
## [41] "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"    "hsa-mir-412"   
## [45] "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-485"   
## [49] "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-494"    "hsa-mir-495"   
## [53] "hsa-mir-496"    "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1"
## [57] "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-518c"   "hsa-mir-518f"  
## [61] "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"   "hsa-mir-525"   
## [65] "hsa-mir-526b"   "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"   
## [69] "hsa-mir-551b"   "hsa-mir-577"    "hsa-mir-654"    "hsa-mir-655"   
## [73] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-758"   
## [77] "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster16"
##  [1] "GATA3.RPPA"     "PDCD4.RPPA"     "PREX1.RPPA"     "ERBB3.R2Gn"    
##  [5] "IGFBP2.R2Gn"    "PRKCA.R2Gn"     "HSPA1A.R2Gn"    "ERRFI1.R2Gn"   
##  [9] "RBM3.R2Gn"      "RPTOR.R2Gn"     "hsa-mir-1185-1" "hsa-mir-1197"  
## [13] "hsa-mir-1228"   "hsa-mir-1245"   "hsa-mir-1270-1" "hsa-mir-135a-1"
## [17] "hsa-mir-184"    "hsa-mir-200b"   "hsa-mir-214"    "hsa-mir-3170"  
## [21] "hsa-mir-323b"   "hsa-mir-335"    "hsa-mir-3678"   "hsa-mir-3909"  
## [25] "hsa-mir-3922"   "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-432"   
## [29] "hsa-mir-455"    "hsa-mir-466"    "hsa-mir-488"    "hsa-mir-493"   
## [33] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-510"    "hsa-mir-541"   
## [37] "hsa-mir-550a-2" "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-876"   
## [41] "hsa-mir-937"   
## [1] "bicluster24"
##   [1] "G6PD.RPPA"      "RBM15.RPPA"     "FASN.RPPA"      "INPP4B.RPPA"   
##   [5] "TSC1.RPPA"      "TTF1.RPPA"      "CDK1.RPPA"      "VHL.RPPA"      
##   [9] "PRDX1.RPPA"     "XBP1.RPPA"      "GAPDH.RPPA"     "MSH6.RPPA"     
##  [13] "PDK1.RPPA"      "TFRC.RPPA"      "PREX1.RPPA"     "MAPK14.R2Gn"   
##  [17] "G6PD.R2Gn"      "NEK7.R2Gn"      "FASN.R2Gn"      "EEF2.R2Gn"     
##  [21] "CHEK2.R2Gn"     "CTNNB1.R2Gn"    "PRKCA.R2Gn"     "STMN1.R2Gn"    
##  [25] "TGM2.R2Gn"      "CTNNA1.R2Gn"    "MYC.R2Gn"       "PIK3R1.R2Gn"   
##  [29] "FOXM1.R2Gn"     "HSPA1A.R2Gn"    "PXN.R2Gn"       "PREX1.R2Gn"    
##  [33] "SQSTM1.R2Gn"    "hsa-mir-101-2"  "hsa-mir-103-2"  "hsa-mir-1185-1"
##  [37] "hsa-mir-1197"   "hsa-mir-122"    "hsa-mir-1258"   "hsa-mir-127"   
##  [41] "hsa-mir-1270-1" "hsa-mir-1291"   "hsa-mir-134"    "hsa-mir-136"   
##  [45] "hsa-mir-137"    "hsa-mir-139"    "hsa-mir-140"    "hsa-mir-146a"  
##  [49] "hsa-mir-154"    "hsa-mir-200a"   "hsa-mir-224"    "hsa-mir-26a-1" 
##  [53] "hsa-mir-299"    "hsa-mir-3170"   "hsa-mir-323"    "hsa-mir-323b"  
##  [57] "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"    "hsa-mir-3607"  
##  [61] "hsa-mir-3687"   "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1"
##  [65] "hsa-mir-376a-2" "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"   
##  [69] "hsa-mir-381"    "hsa-mir-382"    "hsa-mir-3909"   "hsa-mir-3934"  
##  [73] "hsa-mir-3940"   "hsa-mir-409"    "hsa-mir-466"    "hsa-mir-487a"  
##  [77] "hsa-mir-487b"   "hsa-mir-489"    "hsa-mir-494"    "hsa-mir-495"   
##  [81] "hsa-mir-496"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
##  [85] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
##  [89] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
##  [93] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-539"   
##  [97] "hsa-mir-541"    "hsa-mir-548q"   "hsa-mir-548v"   "hsa-mir-551b"  
## [101] "hsa-mir-552"    "hsa-mir-577"    "hsa-mir-605"    "hsa-mir-607"   
## [105] "hsa-mir-636"    "hsa-mir-653"    "hsa-mir-654"    "hsa-mir-655"   
## [109] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-758"    "hsa-mir-770"   
## [113] "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-889"   
## [1] "bicluster9"
##  [1] "G6PD.RPPA"      "GATA3.RPPA"     "EGFR.RPPA"      "FASN.RPPA"     
##  [5] "INPP4B.RPPA"    "TTF1.RPPA"      "VHL.RPPA"       "PRDX1.RPPA"    
##  [9] "MSH6.RPPA"      "MYH11.RPPA"     "G6PD.R2Gn"      "FN1.R2Gn"      
## [13] "CTNNB1.R2Gn"    "TGM2.R2Gn"      "CTNNA1.R2Gn"    "BCL2L1.R2Gn"   
## [17] "YWHAB.R2Gn"     "HSPA1A.R2Gn"    "SQSTM1.R2Gn"    "hsa-mir-1185-1"
## [21] "hsa-mir-1185-2" "hsa-mir-1197"   "hsa-mir-1228"   "hsa-mir-1247"  
## [25] "hsa-mir-1269"   "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"   
## [29] "hsa-mir-154"    "hsa-mir-196a-2" "hsa-mir-216b"   "hsa-mir-218-1" 
## [33] "hsa-mir-299"    "hsa-mir-301b"   "hsa-mir-30c-1"  "hsa-mir-320c-2"
## [37] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [41] "hsa-mir-337"    "hsa-mir-3607"   "hsa-mir-369"    "hsa-mir-370"   
## [45] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"  
## [49] "hsa-mir-377"    "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"   
## [53] "hsa-mir-382"    "hsa-mir-409"    "hsa-mir-410"    "hsa-mir-411"   
## [57] "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"    "hsa-mir-485"   
## [61] "hsa-mir-487a"   "hsa-mir-487b"   "hsa-mir-489"    "hsa-mir-494"   
## [65] "hsa-mir-495"    "hsa-mir-496"    "hsa-mir-499"    "hsa-mir-516a-1"
## [69] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-520a"   "hsa-mir-525"   
## [73] "hsa-mir-539"    "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-548v"  
## [77] "hsa-mir-577"    "hsa-mir-580"    "hsa-mir-607"    "hsa-mir-653"   
## [81] "hsa-mir-654"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-665"   
## [85] "hsa-mir-668"    "hsa-mir-7-2"    "hsa-mir-758"    "hsa-mir-770"   
## [89] "hsa-mir-876"    "hsa-mir-889"   
## [1] "bicluster2"
##  [1] "FASN.RPPA"      "TTF1.RPPA"      "MSH6.RPPA"      "MYH11.RPPA"    
##  [5] "TFRC.RPPA"      "FASN.R2Gn"      "PIK3R1.R2Gn"    "BCL2L1.R2Gn"   
##  [9] "TYMS.R2Gn"      "TFRC.R2Gn"      "SQSTM1.R2Gn"    "hsa-mir-1185-1"
## [13] "hsa-mir-1197"   "hsa-mir-124-1"  "hsa-mir-124-2"  "hsa-mir-124-3" 
## [17] "hsa-mir-1247"   "hsa-mir-134"    "hsa-mir-154"    "hsa-mir-3193"  
## [21] "hsa-mir-323"    "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2" 
## [25] "hsa-mir-3687"   "hsa-mir-370"    "hsa-mir-376a-1" "hsa-mir-376a-2"
## [29] "hsa-mir-377"    "hsa-mir-380"    "hsa-mir-382"    "hsa-mir-3912"  
## [33] "hsa-mir-3922"   "hsa-mir-411"    "hsa-mir-485"    "hsa-mir-487a"  
## [37] "hsa-mir-494"    "hsa-mir-516a-1" "hsa-mir-541"    "hsa-mir-543"   
## [41] "hsa-mir-580"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"   
## [45] "hsa-mir-670"    "hsa-mir-770"    "hsa-mir-873"    "hsa-mir-876"   
## [49] "hsa-mir-937"   
## [1] "bicluster13"
##  [1] "ASNS.RPPA"      "FASN.RPPA"      "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [5] "AKT2.R2Gn"      "EEF2.R2Gn"      "RPS6.R2Gn"      "JUN.R2Gn"      
##  [9] "COL6A1.R2Gn"    "ANXA1.R2Gn"     "HSPA1A.R2Gn"    "SYP.R2Gn"      
## [13] "hsa-mir-1193"   "hsa-mir-124-2"  "hsa-mir-124-3"  "hsa-mir-146b"  
## [17] "hsa-mir-202"    "hsa-mir-31"     "hsa-mir-3682"   "hsa-mir-412"   
## [21] "hsa-mir-466"    "hsa-mir-490"    "hsa-mir-510"    "hsa-mir-516a-2"
## [25] "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-518f"   "hsa-mir-519a-2"
## [29] "hsa-mir-544"    "hsa-mir-552"    "hsa-mir-582"    "hsa-mir-605"   
## [33] "hsa-mir-653"    "hsa-mir-656"    "hsa-mir-891a"  
## [1] "bicluster29"
##  [1] "PEA15.RPPA"     "TFRC.RPPA"      "PREX1.RPPA"     "ERBB3.R2Gn"    
##  [5] "CDH2.R2Gn"      "PEA15.R2Gn"     "ITGA2.R2Gn"     "ADAR.R2Gn"     
##  [9] "FASN.R2Gn"      "YWHAE.R2Gn"     "CTNNB1.R2Gn"    "PRKCA.R2Gn"    
## [13] "CCND1.R2Gn"     "PIK3R2.R2Gn"    "HSPA1A.R2Gn"    "ERRFI1.R2Gn"   
## [17] "PREX1.R2Gn"     "hsa-mir-100"    "hsa-mir-1185-1" "hsa-mir-1185-2"
## [21] "hsa-mir-1197"   "hsa-mir-1258"   "hsa-mir-1270-2" "hsa-mir-135a-1"
## [25] "hsa-mir-139"    "hsa-mir-196b"   "hsa-mir-206"    "hsa-mir-3166"  
## [29] "hsa-mir-3170"   "hsa-mir-3199-1" "hsa-mir-323"    "hsa-mir-323b"  
## [33] "hsa-mir-329-1"  "hsa-mir-335"    "hsa-mir-338"    "hsa-mir-3678"  
## [37] "hsa-mir-376a-1" "hsa-mir-376a-2" "hsa-mir-376c"   "hsa-mir-411"   
## [41] "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-488"   
## [45] "hsa-mir-496"    "hsa-mir-517a"   "hsa-mir-541"    "hsa-mir-543"   
## [49] "hsa-mir-656"    "hsa-mir-668"    "hsa-mir-873"    "hsa-mir-876"   
## [53] "hsa-mir-940"   
## [1] "bicluster10"
##  [1] "G6PD.RPPA"      "ATM.RPPA"       "FASN.RPPA"      "TSC1.RPPA"     
##  [5] "GAPDH.RPPA"     "MSH6.RPPA"      "PDK1.RPPA"      "TFRC.RPPA"     
##  [9] "PREX1.RPPA"     "MAPK14.R2Gn"    "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
## [13] "FN1.R2Gn"       "CDH2.R2Gn"      "RB1.R2Gn"       "MAPK9.R2Gn"    
## [17] "XRCC5.R2Gn"     "FASN.R2Gn"      "CTNNB1.R2Gn"    "PIK3R1.R2Gn"   
## [21] "GAPDH.R2Gn"     "TUBA1B.R2Gn"    "XIAP.R2Gn"      "TFRC.R2Gn"     
## [25] "PARP1.R2Gn"     "hsa-mir-1224"   "hsa-mir-1269"   "hsa-mir-129-2" 
## [29] "hsa-mir-135b"   "hsa-mir-138-1"  "hsa-mir-139"    "hsa-mir-2114"  
## [33] "hsa-mir-218-1"  "hsa-mir-29c"    "hsa-mir-320c-2" "hsa-mir-329-2" 
## [37] "hsa-mir-3655"   "hsa-mir-3922"   "hsa-mir-3923"   "hsa-mir-3926-2"
## [41] "hsa-mir-3940"   "hsa-mir-466"    "hsa-mir-490"    "hsa-mir-506"   
## [45] "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2" 
## [49] "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [53] "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2" 
## [57] "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-585"    "hsa-mir-605"   
## [61] "hsa-mir-664"    "hsa-mir-665"    "hsa-mir-767"    "hsa-mir-876"   
## [1] "bicluster7"
##  [1] "G6PD.RPPA"      "GATA3.RPPA"     "ATM.RPPA"       "EGFR.RPPA"     
##  [5] "TSC1.RPPA"      "GAPDH.RPPA"     "TFRC.RPPA"      "ERBB3.R2Gn"    
##  [9] "FN1.R2Gn"       "TGM2.R2Gn"      "CCND1.R2Gn"     "GAPDH.R2Gn"    
## [13] "MYH9.R2Gn"      "SYP.R2Gn"       "PARP1.R2Gn"     "SNAI2.R2Gn"    
## [17] "hsa-mir-1185-1" "hsa-mir-1226"   "hsa-mir-1269"   "hsa-mir-1293"  
## [21] "hsa-mir-184"    "hsa-mir-2114"   "hsa-mir-29c"    "hsa-mir-30c-1" 
## [25] "hsa-mir-3130-1" "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-3662"  
## [29] "hsa-mir-3922"   "hsa-mir-3923"   "hsa-mir-411"    "hsa-mir-429"   
## [33] "hsa-mir-485"    "hsa-mir-494"    "hsa-mir-506"    "hsa-mir-507"   
## [37] "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3" 
## [41] "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"  
## [45] "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [49] "hsa-mir-514b"   "hsa-mir-543"    "hsa-mir-548v"   "hsa-mir-577"   
## [53] "hsa-mir-582"    "hsa-mir-655"    "hsa-mir-937"    "hsa-mir-939"   
## [1] "bicluster34"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "FASN.RPPA"      "PDCD4.RPPA"    
##  [5] "MSH6.RPPA"      "MSH2.RPPA"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
##  [9] "RPS6KA1.R2Gn"   "ADAR.R2Gn"      "EEF2.R2Gn"      "CTNNB1.R2Gn"   
## [13] "CCND1.R2Gn"     "GAPDH.R2Gn"     "RPTOR.R2Gn"     "SQSTM1.R2Gn"   
## [17] "hsa-mir-124-1"  "hsa-mir-124-3"  "hsa-mir-1248"   "hsa-mir-1251"  
## [21] "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-135b"  
## [25] "hsa-mir-187"    "hsa-mir-200b"   "hsa-mir-218-2"  "hsa-mir-296"   
## [29] "hsa-mir-3065"   "hsa-mir-3130-1" "hsa-mir-3166"   "hsa-mir-3687"  
## [33] "hsa-mir-3690"   "hsa-mir-411"    "hsa-mir-488"    "hsa-mir-510"   
## [37] "hsa-mir-511-2"  "hsa-mir-513a-2" "hsa-mir-518b"   "hsa-mir-552"   
## [41] "hsa-mir-605"    "hsa-mir-607"    "hsa-mir-655"    "hsa-mir-887"   
## [45] "hsa-mir-940"   
## [1] "bicluster31"
##  [1] "G6PD.RPPA"      "ATM.RPPA"       "EGFR.RPPA"      "GAPDH.RPPA"    
##  [5] "MYH11.RPPA"     "ERBB3.R2Gn"     "GAPDH.R2Gn"     "HSPA1A.R2Gn"   
##  [9] "hsa-mir-1185-1" "hsa-mir-1197"   "hsa-mir-1249"   "hsa-mir-1293"  
## [13] "hsa-mir-200b"   "hsa-mir-329-2"  "hsa-mir-33b"    "hsa-mir-433"   
## [17] "hsa-mir-490"    "hsa-mir-516a-1" "hsa-mir-544"    "hsa-mir-585"   
## [21] "hsa-mir-605"    "hsa-mir-656"   
## [1] "bicluster27"
##  [1] "GATA3.RPPA"     "GAPDH.RPPA"     "ERBB3.R2Gn"     "FN1.R2Gn"      
##  [5] "CDH2.R2Gn"      "SERPINE1.R2Gn"  "CTNNB1.R2Gn"    "TGM2.R2Gn"     
##  [9] "CCND1.R2Gn"     "PRDX1.R2Gn"     "PDK1.R2Gn"      "NDRG1.R2Gn"    
## [13] "HSPA1A.R2Gn"    "SYP.R2Gn"       "PARP1.R2Gn"     "CHGA.R2Gn"     
## [17] "hsa-mir-1255a"  "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-133b"  
## [21] "hsa-mir-184"    "hsa-mir-205"    "hsa-mir-296"    "hsa-mir-329-2" 
## [25] "hsa-mir-3928"   "hsa-mir-3934"   "hsa-mir-483"    "hsa-mir-499"   
## [29] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [33] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"    "hsa-mir-513a-1"
## [37] "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"   "hsa-mir-514-1" 
## [41] "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"   "hsa-mir-516a-1"
## [45] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-519a-2" "hsa-mir-525"   
## [49] "hsa-mir-767"   
## [1] "bicluster15"
##  [1] "G6PD.RPPA"      "PTEN.RPPA"      "INPP4B.RPPA"    "PDCD4.RPPA"    
##  [5] "TTF1.RPPA"      "VHL.RPPA"       "PRDX1.RPPA"     "XBP1.RPPA"     
##  [9] "TGM2.R2Gn"      "ANXA1.R2Gn"     "SQSTM1.R2Gn"    "hsa-mir-122"   
## [13] "hsa-mir-1258"   "hsa-mir-153-1"  "hsa-mir-2114"   "hsa-mir-218-1" 
## [17] "hsa-mir-3173"   "hsa-mir-320c-2" "hsa-mir-3610"   "hsa-mir-3940"  
## [21] "hsa-mir-466"    "hsa-mir-489"    "hsa-mir-507"    "hsa-mir-551b"  
## [25] "hsa-mir-552"    "hsa-mir-570"    "hsa-mir-653"    "hsa-mir-656"   
## [29] "hsa-mir-665"    "hsa-mir-7-2"    "hsa-mir-765"    "hsa-mir-770"   
## [33] "hsa-mir-876"    "hsa-mir-95"    
## [1] "bicluster25"
##  [1] "IGFBP2.RPPA"    "AR.RPPA"        "GAPDH.RPPA"     "IGFBP2.R2Gn"   
##  [5] "PRRT2.R2Gn"     "GAPDH.R2Gn"     "ANXA1.R2Gn"     "ERRFI1.R2Gn"   
##  [9] "hsa-mir-1269"   "hsa-mir-190b"   "hsa-mir-196b"   "hsa-mir-301b"  
## [13] "hsa-mir-3187"   "hsa-mir-320c-1" "hsa-mir-3610"   "hsa-mir-3620"  
## [17] "hsa-mir-3940"   "hsa-mir-517a"   "hsa-mir-580"    "hsa-mir-656"   
## [21] "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-891a"  
## [1] "bicluster22"
##  [1] "GATA3.RPPA"     "ATM.RPPA"       "AR.RPPA"        "ERBB3.R2Gn"    
##  [5] "PEA15.R2Gn"     "ADAR.R2Gn"      "CTNNB1.R2Gn"    "SHC1.R2Gn"     
##  [9] "TGM2.R2Gn"      "GAPDH.R2Gn"     "hsa-mir-105-1"  "hsa-mir-133b"  
## [13] "hsa-mir-135b"   "hsa-mir-200a"   "hsa-mir-206"    "hsa-mir-3166"  
## [17] "hsa-mir-320c-2" "hsa-mir-3678"   "hsa-mir-3922"   "hsa-mir-3926-2"
## [21] "hsa-mir-429"    "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-510"   
## [25] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"  
## [29] "hsa-mir-518b"   "hsa-mir-518f"   "hsa-mir-519a-2" "hsa-mir-520a"  
## [33] "hsa-mir-525"    "hsa-mir-548s"   "hsa-mir-579"    "hsa-mir-605"   
## [37] "hsa-mir-7-2"    "hsa-mir-767"   
## [1] "bicluster1"
##  [1] "BRCA2.RPPA"     "FASN.RPPA"      "ERBB3.R2Gn"     "FN1.R2Gn"      
##  [5] "GAPDH.R2Gn"     "hsa-mir-105-1"  "hsa-mir-106a"   "hsa-mir-124-3" 
##  [9] "hsa-mir-135a-2" "hsa-mir-34b"    "hsa-mir-380"    "hsa-mir-411"   
## [13] "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-511-1"  "hsa-mir-541"   
## [17] "hsa-mir-580"    "hsa-mir-655"    "hsa-mir-770"   
## [1] "bicluster28"
##  [1] "TFRC.RPPA"      "ERBB3.R2Gn"     "GATA3.R2Gn"     "CCND1.R2Gn"    
##  [5] "XBP1.R2Gn"      "GAPDH.R2Gn"     "TFRC.R2Gn"      "HSPA1A.R2Gn"   
##  [9] "ERRFI1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1249"   "hsa-mir-1269"  
## [13] "hsa-mir-135a-1" "hsa-mir-138-1"  "hsa-mir-138-2"  "hsa-mir-187"   
## [17] "hsa-mir-196a-2" "hsa-mir-216b"   "hsa-mir-346"    "hsa-mir-34b"   
## [21] "hsa-mir-380"    "hsa-mir-433"    "hsa-mir-485"    "hsa-mir-488"   
## [25] "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-636"    "hsa-mir-9-3"   
## [1] "bicluster12"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "TTF1.RPPA"      "GAPDH.RPPA"    
##  [5] "MSH6.RPPA"      "TFRC.RPPA"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
##  [9] "SNAI2.R2Gn"     "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1185-2"
## [13] "hsa-mir-1262"   "hsa-mir-1269"   "hsa-mir-129-2"  "hsa-mir-2114"  
## [17] "hsa-mir-29b-2"  "hsa-mir-29c"    "hsa-mir-31"     "hsa-mir-320c-2"
## [21] "hsa-mir-34b"    "hsa-mir-3923"   "hsa-mir-411"    "hsa-mir-429"   
## [25] "hsa-mir-487a"   "hsa-mir-510"    "hsa-mir-548q"   "hsa-mir-655"   
## [29] "hsa-mir-891a"   "hsa-mir-937"   
## [1] "bicluster20"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
##  [5] "FN1.R2Gn"       "EIF4G1.R2Gn"    "ADAR.R2Gn"      "STMN1.R2Gn"    
##  [9] "CDK1.R2Gn"      "CTNNA1.R2Gn"    "TYMS.R2Gn"      "TUBA1B.R2Gn"   
## [13] "FOXM1.R2Gn"     "COL6A1.R2Gn"    "hsa-mir-1247"   "hsa-mir-138-1" 
## [17] "hsa-mir-138-2"  "hsa-mir-372"    "hsa-mir-3923"   "hsa-mir-3926-1"
## [21] "hsa-mir-507"   
## [1] "bicluster11"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "EGFR.RPPA"      "MSH6.RPPA"     
##  [5] "G6PD.R2Gn"      "ERBB3.R2Gn"     "FN1.R2Gn"       "TGM2.R2Gn"     
##  [9] "CCND1.R2Gn"     "COL6A1.R2Gn"    "HSPA1A.R2Gn"    "hsa-mir-1185-1"
## [13] "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-206"   
## [17] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-376a-2" "hsa-mir-377"   
## [21] "hsa-mir-380"    "hsa-mir-411"    "hsa-mir-466"    "hsa-mir-485"   
## [25] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-516a-1" "hsa-mir-516a-2"
## [29] "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-525"    "hsa-mir-543"   
## [33] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-876"    "hsa-mir-889"   
## [1] "bicluster14"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "NF2.RPPA"       "ERBB3.R2Gn"    
##  [5] "FN1.R2Gn"       "FASN.R2Gn"      "CTNNB1.R2Gn"    "FOXO3.R2Gn"    
##  [9] "BCL2.R2Gn"      "CCND1.R2Gn"     "XBP1.R2Gn"      "GAPDH.R2Gn"    
## [13] "COL6A1.R2Gn"    "HSPA1A.R2Gn"    "SYP.R2Gn"       "hsa-mir-105-2" 
## [17] "hsa-mir-1269"   "hsa-mir-200a"   "hsa-mir-200b"   "hsa-mir-26a-1" 
## [21] "hsa-mir-3199-1" "hsa-mir-320c-2" "hsa-mir-329-1"  "hsa-mir-3926-1"
## [25] "hsa-mir-433"    "hsa-mir-488"    "hsa-mir-511-2"  "hsa-mir-516a-1"
## [29] "hsa-mir-517a"   "hsa-mir-520a"   "hsa-mir-526b"   "hsa-mir-548q"  
## [33] "hsa-mir-9-3"   
## [1] "bicluster17"
##  [1] "PEA15.RPPA"     "EGFR.RPPA"      "TSC1.RPPA"      "TTF1.RPPA"     
##  [5] "VHL.RPPA"       "GAPDH.RPPA"     "ERBB3.R2Gn"     "PEA15.R2Gn"    
##  [9] "ADAR.R2Gn"      "SERPINE1.R2Gn"  "CTNNB1.R2Gn"    "SHC1.R2Gn"     
## [13] "CCND1.R2Gn"     "GAPDH.R2Gn"     "hsa-mir-1249"   "hsa-mir-1255a" 
## [17] "hsa-mir-1292"   "hsa-mir-138-2"  "hsa-mir-218-1"  "hsa-mir-3190"  
## [21] "hsa-mir-4326"   "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [25] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [29] "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"   "hsa-mir-513c"  
## [33] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-514b"  
## [37] "hsa-mir-659"    "hsa-mir-760"    "hsa-mir-876"   
## [1] "bicluster33"
##  [1] "IGFBP2.R2Gn"    "FN1.R2Gn"       "HSPA1A.R2Gn"    "hsa-mir-1249"  
##  [5] "hsa-mir-196a-2" "hsa-mir-216b"   "hsa-mir-3173"   "hsa-mir-3678"  
##  [9] "hsa-mir-383"    "hsa-mir-516a-2" "hsa-mir-517a"   "hsa-mir-615"   
## [13] "hsa-mir-656"    "hsa-mir-876"   
## [1] "bicluster5"
##  [1] "G6PD.RPPA"      "ASNS.RPPA"      "RBM15.RPPA"     "PEA15.RPPA"    
##  [5] "ATM.RPPA"       "EGFR.RPPA"      "TSC1.RPPA"      "GAPDH.RPPA"    
##  [9] "NF2.RPPA"       "CDH2.R2Gn"      "PEA15.R2Gn"     "ADAR.R2Gn"     
## [13] "SHC1.R2Gn"      "GAPDH.R2Gn"     "SYP.R2Gn"       "hsa-mir-1255a" 
## [17] "hsa-mir-1305"   "hsa-mir-200a"   "hsa-mir-200b"   "hsa-mir-206"   
## [21] "hsa-mir-218-1"  "hsa-mir-296"    "hsa-mir-3610"   "hsa-mir-3687"  
## [25] "hsa-mir-3909"   "hsa-mir-3926-1" "hsa-mir-3940"   "hsa-mir-429"   
## [29] "hsa-mir-548q"   "hsa-mir-552"    "hsa-mir-580"   
## [1] "bicluster18"
##  [1] "PEA15.RPPA"     "ERBB3.R2Gn"     "CDH2.R2Gn"      "GATA3.R2Gn"    
##  [5] "ADAR.R2Gn"      "EEF2.R2Gn"      "CTNNB1.R2Gn"    "RPS6.R2Gn"     
##  [9] "TGM2.R2Gn"      "GAPDH.R2Gn"     "TFRC.R2Gn"      "PARP1.R2Gn"    
## [13] "hsa-mir-1269"   "hsa-mir-3922"   "hsa-mir-507"    "hsa-mir-510"   
## [17] "hsa-mir-514b"   "hsa-mir-516a-1" "hsa-mir-518b"  
## [1] "bicluster26"
##  [1] "G6PD.RPPA"      "EGFR.RPPA"      "TFRC.RPPA"      "ERBB3.R2Gn"    
##  [5] "FN1.R2Gn"       "PIK3R1.R2Gn"    "TFRC.R2Gn"      "ERRFI1.R2Gn"   
##  [9] "hsa-mir-1185-1" "hsa-mir-124-1"  "hsa-mir-216b"   "hsa-mir-224"   
## [13] "hsa-mir-296"    "hsa-mir-3130-1" "hsa-mir-3170"   "hsa-mir-3199-1"
## [17] "hsa-mir-320c-2" "hsa-mir-3662"   "hsa-mir-3923"   "hsa-mir-452"   
## [21] "hsa-mir-487a"   "hsa-mir-488"    "hsa-mir-494"    "hsa-mir-516a-1"
## [25] "hsa-mir-548q"   "hsa-mir-577"    "hsa-mir-580"    "hsa-mir-656"   
## [1] "bicluster3"
##  [1] "IGFBP2.RPPA"    "PDCD4.RPPA"     "ERBB3.R2Gn"     "FN1.R2Gn"      
##  [5] "ADAR.R2Gn"      "SERPINE1.R2Gn"  "PIK3R1.R2Gn"    "MYH9.R2Gn"     
##  [9] "PARP1.R2Gn"     "hsa-mir-1248"   "hsa-mir-129-2"  "hsa-mir-1292"  
## [13] "hsa-mir-182"    "hsa-mir-183"    "hsa-mir-187"    "hsa-mir-516a-1"
## [17] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [21] "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-520a"   "hsa-mir-525"   
## [25] "hsa-mir-526b"   "hsa-mir-570"    "hsa-mir-636"    "hsa-mir-7-2"   
## [29] "hsa-mir-760"    "hsa-mir-765"    "hsa-mir-96"    
## [1] "bicluster23"
##  [1] "PTEN.RPPA"      "EGFR.RPPA"      "ERCC1.RPPA"     "EGFR.R2Gn"     
##  [5] "PIK3R1.R2Gn"    "hsa-mir-1251"   "hsa-mir-1269"   "hsa-mir-135a-1"
##  [9] "hsa-mir-30c-1"  "hsa-mir-3687"   "hsa-mir-767"   
## [1] "bicluster4"
##  [1] "FASN.RPPA"      "MSH6.RPPA"      "IGFBP2.R2Gn"    "FASN.R2Gn"     
##  [5] "CCND1.R2Gn"     "PIK3R2.R2Gn"    "SQSTM1.R2Gn"    "hsa-mir-1249"  
##  [9] "hsa-mir-135b"   "hsa-mir-2114"   "hsa-mir-218-1"  "hsa-mir-34b"   
## [13] "hsa-mir-3614"   "hsa-mir-3923"   "hsa-mir-511-1"  "hsa-mir-511-2" 
## [17] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-627"   
## [1] "bicluster8"
##  [1] "PEA15.RPPA"     "ATM.RPPA"       "MYH11.RPPA"     "TFRC.RPPA"     
##  [5] "KDR.R2Gn"       "ERBB3.R2Gn"     "FN1.R2Gn"       "AKT2.R2Gn"     
##  [9] "CDH2.R2Gn"      "SERPINE1.R2Gn"  "hsa-mir-1270-1" "hsa-mir-135b"  
## [13] "hsa-mir-184"    "hsa-mir-30c-1"  "hsa-mir-3170"   "hsa-mir-765"   
## [1] "bicluster6"
##  [1] "G6PD.RPPA"     "IGFBP2.RPPA"   "MSH6.RPPA"     "IGFBP2.R2Gn"  
##  [5] "FN1.R2Gn"      "SERPINE1.R2Gn" "NDRG1.R2Gn"    "HSPA1A.R2Gn"  
##  [9] "hsa-mir-1228"  "hsa-mir-138-1" "hsa-mir-30c-1" "hsa-mir-3144" 
## [13] "hsa-mir-760"   "hsa-mir-876"  
## [1] "bicluster35"
## [1] "IGFBP2.RPPA"    "PDCD4.RPPA"     "GAPDH.RPPA"     "IGFBP2.R2Gn"   
## [5] "hsa-mir-105-1"  "hsa-mir-488"    "hsa-mir-516b-1" "hsa-mir-517a"  
## [9] "hsa-mir-937"   
## [1] "bicluster32"
##  [1] "IGFBP2.RPPA"   "RBM15.RPPA"    "DIRAS3.R2Gn"   "ERBB3.R2Gn"   
##  [5] "IGFBP2.R2Gn"   "CTNNB1.R2Gn"   "RPS6.R2Gn"     "HSPA1A.R2Gn"  
##  [9] "IDH3A.R2Gn"    "hsa-mir-105-1" "hsa-mir-122"   "hsa-mir-1269" 
## [13] "hsa-mir-183"   "hsa-mir-510"   "hsa-mir-525"   "hsa-mir-570"  
## [17] "hsa-mir-7-2"  
## [1] "bicluster30"
## [1] "INPP4B.RPPA"   "PRDX1.RPPA"    "TFRC.RPPA"     "ADAR.R2Gn"    
## [5] "SYP.R2Gn"      "SQSTM1.R2Gn"   "hsa-mir-138-1"
f43_bic = select.by.Bic(fabia_43)
## [1] "bicluster41"
##   [1] "G6PD.RPPA"      "ASNS.RPPA"      "RBM15.RPPA"     "PTEN.RPPA"     
##   [5] "GATA3.RPPA"     "ATM.RPPA"       "BRCA2.RPPA"     "FASN.RPPA"     
##   [9] "INPP4B.RPPA"    "PCNA.RPPA"      "ACVRL1.RPPA"    "PDCD4.RPPA"    
##  [13] "CDK1.RPPA"      "VHL.RPPA"       "PRDX1.RPPA"     "XBP1.RPPA"     
##  [17] "MSH6.RPPA"      "ERCC1.RPPA"     "PREX1.RPPA"     "AKT1.R2Gn"     
##  [21] "ADAR.R2Gn"      "EEF2.R2Gn"      "PRKCA.R2Gn"     "TGM2.R2Gn"     
##  [25] "CTNNA1.R2Gn"    "GAPDH.R2Gn"     "STAT5A.R2Gn"    "ANXA1.R2Gn"    
##  [29] "TFRC.R2Gn"      "PXN.R2Gn"       "SQSTM1.R2Gn"    "hsa-mir-1185-1"
##  [33] "hsa-mir-1185-2" "hsa-mir-1193"   "hsa-mir-1197"   "hsa-mir-1258"  
##  [37] "hsa-mir-1269"   "hsa-mir-127"    "hsa-mir-134"    "hsa-mir-136"   
##  [41] "hsa-mir-137"    "hsa-mir-138-1"  "hsa-mir-138-2"  "hsa-mir-142"   
##  [45] "hsa-mir-146a"   "hsa-mir-153-1"  "hsa-mir-154"    "hsa-mir-155"   
##  [49] "hsa-mir-196a-1" "hsa-mir-196b"   "hsa-mir-200b"   "hsa-mir-206"   
##  [53] "hsa-mir-216b"   "hsa-mir-217"    "hsa-mir-218-1"  "hsa-mir-223"   
##  [57] "hsa-mir-299"    "hsa-mir-301b"   "hsa-mir-31"     "hsa-mir-3170"  
##  [61] "hsa-mir-3173"   "hsa-mir-3199-1" "hsa-mir-320c-1" "hsa-mir-323"   
##  [65] "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-329-2"  "hsa-mir-337"   
##  [69] "hsa-mir-3607"   "hsa-mir-3610"   "hsa-mir-3614"   "hsa-mir-362"   
##  [73] "hsa-mir-3687"   "hsa-mir-369"    "hsa-mir-370"    "hsa-mir-376a-1"
##  [77] "hsa-mir-376a-2" "hsa-mir-376b"   "hsa-mir-376c"   "hsa-mir-377"   
##  [81] "hsa-mir-379"    "hsa-mir-380"    "hsa-mir-381"    "hsa-mir-382"   
##  [85] "hsa-mir-3926-1" "hsa-mir-3940"   "hsa-mir-409"    "hsa-mir-410"   
##  [89] "hsa-mir-411"    "hsa-mir-431"    "hsa-mir-432"    "hsa-mir-433"   
##  [93] "hsa-mir-455"    "hsa-mir-466"    "hsa-mir-485"    "hsa-mir-487a"  
##  [97] "hsa-mir-487b"   "hsa-mir-489"    "hsa-mir-494"    "hsa-mir-495"   
## [101] "hsa-mir-496"    "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2"
## [105] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-517a"   "hsa-mir-518b"  
## [109] "hsa-mir-518f"   "hsa-mir-519a-2" "hsa-mir-539"    "hsa-mir-541"   
## [113] "hsa-mir-543"    "hsa-mir-544"    "hsa-mir-551b"   "hsa-mir-552"   
## [117] "hsa-mir-577"    "hsa-mir-579"    "hsa-mir-582"    "hsa-mir-605"   
## [121] "hsa-mir-607"    "hsa-mir-653"    "hsa-mir-654"    "hsa-mir-655"   
## [125] "hsa-mir-656"    "hsa-mir-665"    "hsa-mir-668"    "hsa-mir-758"   
## [129] "hsa-mir-770"    "hsa-mir-889"   
## [1] "bicluster21"
##  [1] "RBM15.RPPA"     "PEA15.RPPA"     "EGFR.RPPA"      "FASN.RPPA"     
##  [5] "TFRC.RPPA"      "CDH2.R2Gn"      "PEA15.R2Gn"     "ADAR.R2Gn"     
##  [9] "SHC1.R2Gn"      "MYH9.R2Gn"      "SYP.R2Gn"       "hsa-mir-1193"  
## [13] "hsa-mir-124-1"  "hsa-mir-124-2"  "hsa-mir-124-3"  "hsa-mir-1258"  
## [17] "hsa-mir-1292"   "hsa-mir-1304"   "hsa-mir-141"    "hsa-mir-153-1" 
## [21] "hsa-mir-153-2"  "hsa-mir-206"    "hsa-mir-219-1"  "hsa-mir-2277"  
## [25] "hsa-mir-26a-1"  "hsa-mir-3191"   "hsa-mir-3199-1" "hsa-mir-320c-2"
## [29] "hsa-mir-329-2"  "hsa-mir-3682"   "hsa-mir-383"    "hsa-mir-3909"  
## [33] "hsa-mir-3923"   "hsa-mir-3926-1" "hsa-mir-3926-2" "hsa-mir-3934"  
## [37] "hsa-mir-466"    "hsa-mir-499"    "hsa-mir-506"    "hsa-mir-507"   
## [41] "hsa-mir-508"    "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3" 
## [45] "hsa-mir-510"    "hsa-mir-513a-1" "hsa-mir-513a-2" "hsa-mir-513b"  
## [49] "hsa-mir-513c"   "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [53] "hsa-mir-514b"   "hsa-mir-516a-1" "hsa-mir-519a-2" "hsa-mir-525"   
## [57] "hsa-mir-548s"   "hsa-mir-548v"   "hsa-mir-550a-2" "hsa-mir-552"   
## [61] "hsa-mir-579"    "hsa-mir-580"    "hsa-mir-581"    "hsa-mir-592"   
## [65] "hsa-mir-605"    "hsa-mir-615"    "hsa-mir-765"    "hsa-mir-767"   
## [69] "hsa-mir-9-3"   
## [1] "bicluster19"
##  [1] "ASNS.RPPA"      "INPP4B.RPPA"    "MYH11.RPPA"     "ERBB3.R2Gn"    
##  [5] "FN1.R2Gn"       "CTNNB1.R2Gn"    "SHC1.R2Gn"      "PARK7.R2Gn"    
##  [9] "TGM2.R2Gn"      "HSPA1A.R2Gn"    "hsa-mir-1197"   "hsa-mir-122"   
## [13] "hsa-mir-1293"   "hsa-mir-205"    "hsa-mir-206"    "hsa-mir-30c-1" 
## [17] "hsa-mir-3144"   "hsa-mir-323b"   "hsa-mir-329-1"  "hsa-mir-3655"  
## [21] "hsa-mir-3682"   "hsa-mir-380"    "hsa-mir-3926-1" "hsa-mir-3926-2"
## [25] "hsa-mir-411"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-516a-1"
## [29] "hsa-mir-516a-2" "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"  
## [33] "hsa-mir-518c"   "hsa-mir-518f"   "hsa-mir-519a-1" "hsa-mir-519a-2"
## [37] "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-526b"   "hsa-mir-541"   
## [41] "hsa-mir-577"    "hsa-mir-656"    "hsa-mir-668"   
## [1] "bicluster38"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "FASN.RPPA"      "PDCD4.RPPA"    
##  [5] "AR.RPPA"        "GAPDH.RPPA"     "MSH6.RPPA"      "MSH2.RPPA"     
##  [9] "ERBB2.R2Gn"     "KDR.R2Gn"       "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
## [13] "FASN.R2Gn"      "PRKCA.R2Gn"     "PIK3R1.R2Gn"    "GAPDH.R2Gn"    
## [17] "MYH9.R2Gn"      "COL6A1.R2Gn"    "PIK3R2.R2Gn"    "HSPA1A.R2Gn"   
## [21] "ERRFI1.R2Gn"    "PARP1.R2Gn"     "PREX1.R2Gn"     "CHGA.R2Gn"     
## [25] "hsa-let-7f-1"   "hsa-mir-1179"   "hsa-mir-1247"   "hsa-mir-1287"  
## [29] "hsa-mir-1293"   "hsa-mir-1305"   "hsa-mir-135a-1" "hsa-mir-135b"  
## [33] "hsa-mir-187"    "hsa-mir-194-1"  "hsa-mir-194-2"  "hsa-mir-200a"  
## [37] "hsa-mir-2114"   "hsa-mir-216b"   "hsa-mir-224"    "hsa-mir-3130-1"
## [41] "hsa-mir-3170"   "hsa-mir-3173"   "hsa-mir-320c-2" "hsa-mir-329-2" 
## [45] "hsa-mir-3652"   "hsa-mir-3662"   "hsa-mir-3934"   "hsa-mir-429"   
## [49] "hsa-mir-452"    "hsa-mir-488"    "hsa-mir-499"    "hsa-mir-517a"  
## [53] "hsa-mir-518c"   "hsa-mir-519a-2" "hsa-mir-548s"   "hsa-mir-551b"  
## [57] "hsa-mir-577"    "hsa-mir-605"    "hsa-mir-636"    "hsa-mir-873"   
## [61] "hsa-mir-876"    "hsa-mir-9-3"    "hsa-mir-939"   
## [1] "bicluster16"
##  [1] "GATA3.RPPA"     "PDCD4.RPPA"     "PREX1.RPPA"     "ERBB3.R2Gn"    
##  [5] "IGFBP2.R2Gn"    "SERPINE1.R2Gn"  "PRKCA.R2Gn"     "GAPDH.R2Gn"    
##  [9] "HSPA1A.R2Gn"    "ERRFI1.R2Gn"    "RBM3.R2Gn"      "hsa-mir-105-1" 
## [13] "hsa-mir-105-2"  "hsa-mir-1197"   "hsa-mir-1224"   "hsa-mir-1270-1"
## [17] "hsa-mir-135a-1" "hsa-mir-194-2"  "hsa-mir-200b"   "hsa-mir-215"   
## [21] "hsa-mir-31"     "hsa-mir-335"    "hsa-mir-3678"   "hsa-mir-3909"  
## [25] "hsa-mir-3922"   "hsa-mir-412"    "hsa-mir-431"    "hsa-mir-4326"  
## [29] "hsa-mir-466"    "hsa-mir-488"    "hsa-mir-504"    "hsa-mir-510"   
## [33] "hsa-mir-541"    "hsa-mir-550a-2" "hsa-mir-585"    "hsa-mir-607"   
## [37] "hsa-mir-656"    "hsa-mir-7-2"    "hsa-mir-7-3"    "hsa-mir-765"   
## [41] "hsa-mir-767"    "hsa-mir-876"   
## [1] "bicluster34"
##  [1] "RBM15.RPPA"     "PDCD4.RPPA"     "MSH6.RPPA"      "TFRC.RPPA"     
##  [5] "MSH2.RPPA"      "ERBB3.R2Gn"     "RPS6KA1.R2Gn"   "ADAR.R2Gn"     
##  [9] "EEF2.R2Gn"      "CTNNB1.R2Gn"    "SHC1.R2Gn"      "CHGA.R2Gn"     
## [13] "hsa-mir-106a"   "hsa-mir-124-1"  "hsa-mir-124-2"  "hsa-mir-124-3" 
## [17] "hsa-mir-1248"   "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1274b" 
## [21] "hsa-mir-135a-2" "hsa-mir-141"    "hsa-mir-200b"   "hsa-mir-218-2" 
## [25] "hsa-mir-296"    "hsa-mir-3130-1" "hsa-mir-320c-2" "hsa-mir-34b"   
## [29] "hsa-mir-3648"   "hsa-mir-3676"   "hsa-mir-3687"   "hsa-mir-411"   
## [33] "hsa-mir-511-2"  "hsa-mir-518b"   "hsa-mir-552"    "hsa-mir-605"   
## [37] "hsa-mir-887"    "hsa-mir-940"   
## [1] "bicluster42"
##  [1] "IGFBP2.RPPA"    "RBM15.RPPA"     "PEA15.RPPA"     "EGFR.RPPA"     
##  [5] "TSC1.RPPA"      "PDCD4.RPPA"     "TFRC.RPPA"      "IGFBP2.R2Gn"   
##  [9] "CDH2.R2Gn"      "CTNNA1.R2Gn"    "NOTCH3.R2Gn"    "NDRG1.R2Gn"    
## [13] "SYP.R2Gn"       "RPTOR.R2Gn"     "hsa-mir-122"    "hsa-mir-1255a" 
## [17] "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-129-1"  "hsa-mir-153-1" 
## [21] "hsa-mir-153-2"  "hsa-mir-187"    "hsa-mir-29a"    "hsa-mir-3166"  
## [25] "hsa-mir-3173"   "hsa-mir-320c-2" "hsa-mir-346"    "hsa-mir-3651"  
## [29] "hsa-mir-3662"   "hsa-mir-3676"   "hsa-mir-552"    "hsa-mir-570"   
## [33] "hsa-mir-642a"   "hsa-mir-766"    "hsa-mir-876"    "hsa-mir-885"   
## [37] "hsa-mir-935"    "hsa-mir-937"    "hsa-mir-95"    
## [1] "bicluster22"
##  [1] "GATA3.RPPA"     "ATM.RPPA"       "AR.RPPA"        "ERBB3.R2Gn"    
##  [5] "PEA15.R2Gn"     "ADAR.R2Gn"      "EEF2.R2Gn"      "SERPINE1.R2Gn" 
##  [9] "SHC1.R2Gn"      "GAPDH.R2Gn"     "hsa-mir-105-1"  "hsa-mir-105-2" 
## [13] "hsa-mir-133b"   "hsa-mir-135b"   "hsa-mir-137"    "hsa-mir-200a"  
## [17] "hsa-mir-206"    "hsa-mir-3166"   "hsa-mir-3191"   "hsa-mir-3678"  
## [21] "hsa-mir-3922"   "hsa-mir-429"    "hsa-mir-516a-1" "hsa-mir-516a-2"
## [25] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-518f"  
## [29] "hsa-mir-519a-2" "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-548s"  
## [33] "hsa-mir-579"    "hsa-mir-605"    "hsa-mir-7-2"    "hsa-mir-708"   
## [37] "hsa-mir-767"    "hsa-mir-891a"   "hsa-mir-935"   
## [1] "bicluster25"
##  [1] "IGFBP2.RPPA"    "PTEN.RPPA"      "AR.RPPA"        "GAPDH.RPPA"    
##  [5] "IGFBP2.R2Gn"    "ITGA2.R2Gn"     "CTNNB1.R2Gn"    "BCL2L1.R2Gn"   
##  [9] "GAPDH.R2Gn"     "ERRFI1.R2Gn"    "hsa-mir-1262"   "hsa-mir-190b"  
## [13] "hsa-mir-196b"   "hsa-mir-296"    "hsa-mir-301b"   "hsa-mir-3187"  
## [17] "hsa-mir-320c-1" "hsa-mir-329-2"  "hsa-mir-3610"   "hsa-mir-3620"  
## [21] "hsa-mir-3928"   "hsa-mir-3940"   "hsa-mir-483"    "hsa-mir-503"   
## [25] "hsa-mir-516a-1" "hsa-mir-517a"   "hsa-mir-518c"   "hsa-mir-548q"  
## [29] "hsa-mir-580"    "hsa-mir-7-3"    "hsa-mir-765"    "hsa-mir-873"   
## [33] "hsa-mir-876"    "hsa-mir-891a"   "hsa-mir-937"   
## [1] "bicluster10"
##  [1] "PEA15.RPPA"     "ATM.RPPA"       "EGFR.RPPA"      "FASN.RPPA"     
##  [5] "TSC1.RPPA"      "GAPDH.RPPA"     "TFRC.RPPA"      "CDH2.R2Gn"     
##  [9] "XRCC5.R2Gn"     "FASN.R2Gn"      "EEF2.R2Gn"      "CTNNB1.R2Gn"   
## [13] "PIK3R1.R2Gn"    "GAPDH.R2Gn"     "TUBA1B.R2Gn"    "TFRC.R2Gn"     
## [17] "PARP1.R2Gn"     "hsa-mir-1228"   "hsa-mir-1269"   "hsa-mir-129-2" 
## [21] "hsa-mir-205"    "hsa-mir-218-1"  "hsa-mir-3173"   "hsa-mir-3651"  
## [25] "hsa-mir-3655"   "hsa-mir-3922"   "hsa-mir-3923"   "hsa-mir-3926-2"
## [29] "hsa-mir-490"    "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"   
## [33] "hsa-mir-509-1"  "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-510"   
## [37] "hsa-mir-513a-2" "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3" 
## [41] "hsa-mir-585"    "hsa-mir-767"    "hsa-mir-876"   
## [1] "bicluster2"
##  [1] "GATA3.RPPA"     "TTF1.RPPA"      "MYH11.RPPA"     "TFRC.RPPA"     
##  [5] "SRC.R2Gn"       "CTNNB1.R2Gn"    "PIK3R1.R2Gn"    "BCL2L1.R2Gn"   
##  [9] "TFRC.R2Gn"      "SQSTM1.R2Gn"    "hsa-let-7f-1"   "hsa-mir-1-2"   
## [13] "hsa-mir-1185-1" "hsa-mir-1228"   "hsa-mir-124-1"  "hsa-mir-124-2" 
## [17] "hsa-mir-124-3"  "hsa-mir-301b"   "hsa-mir-3193"   "hsa-mir-3199-1"
## [21] "hsa-mir-329-2"  "hsa-mir-3610"   "hsa-mir-376a-2" "hsa-mir-377"   
## [25] "hsa-mir-380"    "hsa-mir-3912"   "hsa-mir-3922"   "hsa-mir-411"   
## [29] "hsa-mir-487a"   "hsa-mir-494"    "hsa-mir-516a-1" "hsa-mir-519a-2"
## [33] "hsa-mir-541"    "hsa-mir-561"    "hsa-mir-570"    "hsa-mir-580"   
## [37] "hsa-mir-585"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-663"   
## [41] "hsa-mir-7-2"    "hsa-mir-765"    "hsa-mir-767"    "hsa-mir-770"   
## [45] "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-937"   
## [1] "bicluster13"
##  [1] "ASNS.RPPA"      "GATA3.RPPA"     "FN1.R2Gn"       "EEF2.R2Gn"     
##  [5] "RPS6.R2Gn"      "JUN.R2Gn"       "CCND1.R2Gn"     "COL6A1.R2Gn"   
##  [9] "ANXA1.R2Gn"     "HSPA1A.R2Gn"    "SYP.R2Gn"       "hsa-mir-1193"  
## [13] "hsa-mir-124-3"  "hsa-mir-202"    "hsa-mir-206"    "hsa-mir-31"    
## [17] "hsa-mir-320c-2" "hsa-mir-34b"    "hsa-mir-3682"   "hsa-mir-383"   
## [21] "hsa-mir-466"    "hsa-mir-490"    "hsa-mir-511-1"  "hsa-mir-517a"  
## [25] "hsa-mir-518f"   "hsa-mir-519a-2" "hsa-mir-582"    "hsa-mir-592"   
## [29] "hsa-mir-618"    "hsa-mir-891a"   "hsa-mir-937"   
## [1] "bicluster29"
##  [1] "PEA15.RPPA"     "EGFR.RPPA"      "FASN.RPPA"      "TTF1.RPPA"     
##  [5] "TFRC.RPPA"      "PREX1.RPPA"     "ERBB3.R2Gn"     "ITGA2.R2Gn"    
##  [9] "FASN.R2Gn"      "CTNNB1.R2Gn"    "CCND1.R2Gn"     "PIK3R2.R2Gn"   
## [13] "HSPA1A.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1258"   "hsa-mir-135a-1"
## [17] "hsa-mir-139"    "hsa-mir-187"    "hsa-mir-196b"   "hsa-mir-206"   
## [21] "hsa-mir-3166"   "hsa-mir-3170"   "hsa-mir-3199-1" "hsa-mir-320c-2"
## [25] "hsa-mir-335"    "hsa-mir-3678"   "hsa-mir-433"    "hsa-mir-487a"  
## [29] "hsa-mir-488"    "hsa-mir-517a"   "hsa-mir-525"    "hsa-mir-541"   
## [33] "hsa-mir-668"    "hsa-mir-7-3"    "hsa-mir-876"    "hsa-mir-940"   
## [1] "bicluster7"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "GATA3.RPPA"     "ATM.RPPA"      
##  [5] "EGFR.RPPA"      "GAPDH.RPPA"     "PDK1.RPPA"      "TFRC.RPPA"     
##  [9] "G6PD.R2Gn"      "ERBB3.R2Gn"     "FN1.R2Gn"       "SERPINE1.R2Gn" 
## [13] "CCND1.R2Gn"     "GAPDH.R2Gn"     "SYP.R2Gn"       "hsa-mir-105-1" 
## [17] "hsa-mir-1185-1" "hsa-mir-1226"   "hsa-mir-1254"   "hsa-mir-1293"  
## [21] "hsa-mir-149"    "hsa-mir-184"    "hsa-mir-2114"   "hsa-mir-30c-1" 
## [25] "hsa-mir-3130-1" "hsa-mir-3662"   "hsa-mir-3922"   "hsa-mir-510"   
## [29] "hsa-mir-518b"   "hsa-mir-548v"   "hsa-mir-582"   
## [1] "bicluster31"
##  [1] "G6PD.RPPA"      "ATM.RPPA"       "EGFR.RPPA"      "GAPDH.RPPA"    
##  [5] "MYH11.RPPA"     "ERBB3.R2Gn"     "CDKN1A.R2Gn"    "YBX1.R2Gn"     
##  [9] "RPS6.R2Gn"      "GAPDH.R2Gn"     "HSPA1A.R2Gn"    "hsa-mir-1249"  
## [13] "hsa-mir-135a-1" "hsa-mir-200a"   "hsa-mir-200b"   "hsa-mir-3130-1"
## [17] "hsa-mir-3199-1" "hsa-mir-33b"    "hsa-mir-3610"   "hsa-mir-3682"  
## [21] "hsa-mir-516a-1" "hsa-mir-525"    "hsa-mir-550a-2" "hsa-mir-580"   
## [25] "hsa-mir-585"    "hsa-mir-624"    "hsa-mir-7-3"   
## [1] "bicluster43"
##  [1] "PTEN.RPPA"      "FASN.RPPA"      "PDCD4.RPPA"     "MSH6.RPPA"     
##  [5] "MSH2.RPPA"      "KDR.R2Gn"       "ERBB3.R2Gn"     "AKT2.R2Gn"     
##  [9] "FASN.R2Gn"      "EEF2.R2Gn"      "BCL2L1.R2Gn"    "RET.R2Gn"      
## [13] "hsa-mir-1269"   "hsa-mir-129-1"  "hsa-mir-129-2"  "hsa-mir-1291"  
## [17] "hsa-mir-138-2"  "hsa-mir-190b"   "hsa-mir-196a-2" "hsa-mir-200a"  
## [21] "hsa-mir-2114"   "hsa-mir-31"     "hsa-mir-3170"   "hsa-mir-3191"  
## [25] "hsa-mir-3193"   "hsa-mir-320c-2" "hsa-mir-3610"   "hsa-mir-3687"  
## [29] "hsa-mir-3909"   "hsa-mir-3923"   "hsa-mir-4326"   "hsa-mir-466"   
## [33] "hsa-mir-488"    "hsa-mir-510"    "hsa-mir-519a-2" "hsa-mir-548q"  
## [37] "hsa-mir-552"    "hsa-mir-585"    "hsa-mir-607"    "hsa-mir-615"   
## [41] "hsa-mir-636"    "hsa-mir-7-2"    "hsa-mir-873"    "hsa-mir-876"   
## [45] "hsa-mir-95"    
## [1] "bicluster27"
##  [1] "GATA3.RPPA"     "ACVRL1.RPPA"    "GAPDH.RPPA"     "ERBB3.R2Gn"    
##  [5] "FN1.R2Gn"       "CTNNB1.R2Gn"    "CCND1.R2Gn"     "NDRG1.R2Gn"    
##  [9] "HSPA1A.R2Gn"    "ERRFI1.R2Gn"    "SYP.R2Gn"       "PARP1.R2Gn"    
## [13] "hsa-mir-1245"   "hsa-mir-1255a"  "hsa-mir-1270-1" "hsa-mir-1270-2"
## [17] "hsa-mir-133b"   "hsa-mir-184"    "hsa-mir-29c"    "hsa-mir-3934"  
## [21] "hsa-mir-483"    "hsa-mir-499"    "hsa-mir-507"    "hsa-mir-510"   
## [25] "hsa-mir-511-2"  "hsa-mir-513c"   "hsa-mir-514b"   "hsa-mir-516a-1"
## [29] "hsa-mir-519a-1" "hsa-mir-519a-2" "hsa-mir-570"    "hsa-mir-580"   
## [33] "hsa-mir-675"    "hsa-mir-767"   
## [1] "bicluster20"
##  [1] "IGFBP2.RPPA"    "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [5] "AKT3.R2Gn"      "CDKN1A.R2Gn"    "EIF4G1.R2Gn"    "ADAR.R2Gn"     
##  [9] "RPS6.R2Gn"      "ANLN.R2Gn"      "STMN1.R2Gn"     "TGM2.R2Gn"     
## [13] "CDK1.R2Gn"      "CTNNA1.R2Gn"    "CAV1.R2Gn"      "TYMS.R2Gn"     
## [17] "CCNB1.R2Gn"     "TUBA1B.R2Gn"    "FOXM1.R2Gn"     "COL6A1.R2Gn"   
## [21] "YWHAB.R2Gn"     "EZH2.R2Gn"      "CDKN2A.R2Gn"    "hsa-mir-1245"  
## [25] "hsa-mir-1247"   "hsa-mir-138-1"  "hsa-mir-138-2"  "hsa-mir-216a"  
## [29] "hsa-mir-26a-1"  "hsa-mir-3190"   "hsa-mir-3191"   "hsa-mir-3199-1"
## [33] "hsa-mir-372"    "hsa-mir-3923"   "hsa-mir-3926-1" "hsa-mir-466"   
## [37] "hsa-mir-499"    "hsa-mir-507"    "hsa-mir-876"   
## [1] "bicluster37"
##  [1] "G6PD.RPPA"      "ATM.RPPA"       "FASN.RPPA"      "TTF1.RPPA"     
##  [5] "GAPDH.RPPA"     "MSH6.RPPA"      "PREX1.RPPA"     "DIRAS3.R2Gn"   
##  [9] "FASN.R2Gn"      "FOXO3.R2Gn"     "GAPDH.R2Gn"     "SQSTM1.R2Gn"   
## [13] "hsa-mir-1255a"  "hsa-mir-1292"   "hsa-mir-138-2"  "hsa-mir-146a"  
## [17] "hsa-mir-196a-2" "hsa-mir-218-1"  "hsa-mir-3191"   "hsa-mir-3687"  
## [21] "hsa-mir-3922"   "hsa-mir-4326"   "hsa-mir-488"    "hsa-mir-489"   
## [25] "hsa-mir-499"    "hsa-mir-504"    "hsa-mir-510"    "hsa-mir-513a-1"
## [29] "hsa-mir-516b-1" "hsa-mir-518c"   "hsa-mir-519a-2" "hsa-mir-548s"  
## [33] "hsa-mir-584"    "hsa-mir-653"    "hsa-mir-656"    "hsa-mir-675"   
## [37] "hsa-mir-760"    "hsa-mir-770"    "hsa-mir-873"    "hsa-mir-876"   
## [1] "bicluster5"
##  [1] "G6PD.RPPA"      "ASNS.RPPA"      "RBM15.RPPA"     "ATM.RPPA"      
##  [5] "EGFR.RPPA"      "TSC1.RPPA"      "GAPDH.RPPA"     "TFRC.RPPA"     
##  [9] "CDKN1A.R2Gn"    "PEA15.R2Gn"     "ADAR.R2Gn"      "SHC1.R2Gn"     
## [13] "GAPDH.R2Gn"     "HSPA1A.R2Gn"    "hsa-mir-1179"   "hsa-mir-1255a" 
## [17] "hsa-mir-1305"   "hsa-mir-184"    "hsa-mir-200a"   "hsa-mir-200b"  
## [21] "hsa-mir-206"    "hsa-mir-216b"   "hsa-mir-217"    "hsa-mir-218-1" 
## [25] "hsa-mir-219-1"  "hsa-mir-26a-1"  "hsa-mir-296"    "hsa-mir-3173"  
## [29] "hsa-mir-3676"   "hsa-mir-3687"   "hsa-mir-3909"   "hsa-mir-3926-1"
## [33] "hsa-mir-3940"   "hsa-mir-548q"   "hsa-mir-552"    "hsa-mir-580"   
## [37] "hsa-mir-636"   
## [1] "bicluster28"
##  [1] "TFRC.RPPA"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "FN1.R2Gn"      
##  [5] "GAPDH.R2Gn"     "TFRC.R2Gn"      "HSPA1A.R2Gn"    "ERRFI1.R2Gn"   
##  [9] "hsa-mir-1185-1" "hsa-mir-1197"   "hsa-mir-1249"   "hsa-mir-1254"  
## [13] "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1292"  
## [17] "hsa-mir-135a-1" "hsa-mir-137"    "hsa-mir-138-1"  "hsa-mir-138-2" 
## [21] "hsa-mir-346"    "hsa-mir-3610"   "hsa-mir-3687"   "hsa-mir-380"   
## [25] "hsa-mir-3926-1" "hsa-mir-3940"   "hsa-mir-433"    "hsa-mir-466"   
## [29] "hsa-mir-485"    "hsa-mir-488"    "hsa-mir-490"    "hsa-mir-499"   
## [33] "hsa-mir-525"    "hsa-mir-541"    "hsa-mir-543"    "hsa-mir-615"   
## [37] "hsa-mir-770"    "hsa-mir-885"    "hsa-mir-9-3"   
## [1] "bicluster9"
##  [1] "G6PD.RPPA"      "ASNS.RPPA"      "GATA3.RPPA"     "EGFR.RPPA"     
##  [5] "INPP4B.RPPA"    "TTF1.RPPA"      "VHL.RPPA"       "MYH11.RPPA"    
##  [9] "NF2.RPPA"       "TFRC.RPPA"      "G6PD.R2Gn"      "CDH2.R2Gn"     
## [13] "FOXO3.R2Gn"     "TGM2.R2Gn"      "HSPA1A.R2Gn"    "SQSTM1.R2Gn"   
## [17] "hsa-mir-1185-1" "hsa-mir-1185-2" "hsa-mir-1228"   "hsa-mir-1247"  
## [21] "hsa-mir-1269"   "hsa-mir-138-1"  "hsa-mir-206"    "hsa-mir-2277"  
## [25] "hsa-mir-301b"   "hsa-mir-31"     "hsa-mir-320c-2" "hsa-mir-329-2" 
## [29] "hsa-mir-376a-2" "hsa-mir-377"    "hsa-mir-3917"   "hsa-mir-3926-2"
## [33] "hsa-mir-411"    "hsa-mir-485"    "hsa-mir-487a"   "hsa-mir-494"   
## [37] "hsa-mir-499"    "hsa-mir-516a-1" "hsa-mir-516b-1" "hsa-mir-517a"  
## [41] "hsa-mir-520a"   "hsa-mir-525"    "hsa-mir-548v"   "hsa-mir-577"   
## [45] "hsa-mir-607"    "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-668"   
## [49] "hsa-mir-7-2"    "hsa-mir-770"   
## [1] "bicluster12"
##  [1] "IGFBP2.RPPA"    "TTF1.RPPA"      "GAPDH.RPPA"     "MSH6.RPPA"     
##  [5] "TFRC.RPPA"      "MSH2.RPPA"      "ERBB3.R2Gn"     "IGFBP2.R2Gn"   
##  [9] "CDKN1A.R2Gn"    "PDCD4.R2Gn"     "HSPA1A.R2Gn"    "SNAI2.R2Gn"    
## [13] "SQSTM1.R2Gn"    "hsa-mir-1185-1" "hsa-mir-1262"   "hsa-mir-1269"  
## [17] "hsa-mir-129-2"  "hsa-mir-1292"   "hsa-mir-1293"   "hsa-mir-196a-2"
## [21] "hsa-mir-200a"   "hsa-mir-31"     "hsa-mir-3199-1" "hsa-mir-320c-2"
## [25] "hsa-mir-34b"    "hsa-mir-3655"   "hsa-mir-3687"   "hsa-mir-3923"  
## [29] "hsa-mir-3934"   "hsa-mir-411"    "hsa-mir-429"    "hsa-mir-4326"  
## [33] "hsa-mir-483"    "hsa-mir-494"    "hsa-mir-510"    "hsa-mir-548q"  
## [37] "hsa-mir-552"    "hsa-mir-561"    "hsa-mir-615"    "hsa-mir-624"   
## [41] "hsa-mir-655"    "hsa-mir-656"    "hsa-mir-670"    "hsa-mir-675"   
## [45] "hsa-mir-891a"   "hsa-mir-9-1"    "hsa-mir-9-2"    "hsa-mir-9-3"   
## [49] "hsa-mir-937"   
## [1] "bicluster1"
##  [1] "G6PD.RPPA"      "BRCA2.RPPA"     "FASN.RPPA"      "ACVRL1.RPPA"   
##  [5] "GAPDH.RPPA"     "TFRC.RPPA"      "GAPDH.R2Gn"     "hsa-mir-106a"  
##  [9] "hsa-mir-1228"   "hsa-mir-124-3"  "hsa-mir-1269"   "hsa-mir-1274b" 
## [13] "hsa-mir-135a-1" "hsa-mir-135a-2" "hsa-mir-139"    "hsa-mir-215"   
## [17] "hsa-mir-3130-1" "hsa-mir-3173"   "hsa-mir-320c-1" "hsa-mir-346"   
## [21] "hsa-mir-34b"    "hsa-mir-3619"   "hsa-mir-3690"   "hsa-mir-380"   
## [25] "hsa-mir-525"    "hsa-mir-580"    "hsa-mir-618"    "hsa-mir-636"   
## [29] "hsa-mir-639"    "hsa-mir-765"   
## [1] "bicluster23"
##  [1] "IGFBP2.RPPA"    "PTEN.RPPA"      "EGFR.RPPA"      "FASN.RPPA"     
##  [5] "MYH11.RPPA"     "PDK1.RPPA"      "ERCC1.RPPA"     "ADAR.R2Gn"     
##  [9] "EGFR.R2Gn"      "FASN.R2Gn"      "SHC1.R2Gn"      "PIK3R1.R2Gn"   
## [13] "TUBA1B.R2Gn"    "ERRFI1.R2Gn"    "SYP.R2Gn"       "hsa-mir-1251"  
## [17] "hsa-mir-135a-1" "hsa-mir-187"    "hsa-mir-196a-2" "hsa-mir-219-1" 
## [21] "hsa-mir-2277"   "hsa-mir-26a-1"  "hsa-mir-30c-1"  "hsa-mir-3173"  
## [25] "hsa-mir-3651"   "hsa-mir-3676"   "hsa-mir-3687"   "hsa-mir-548s"  
## [29] "hsa-mir-551b"   "hsa-mir-570"    "hsa-mir-605"    "hsa-mir-636"   
## [33] "hsa-mir-659"    "hsa-mir-663"    "hsa-mir-7-2"    "hsa-mir-767"   
## [37] "hsa-mir-9-3"   
## [1] "bicluster4"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "G6PD.R2Gn"      "IGFBP2.R2Gn"   
##  [5] "RPS6.R2Gn"      "PTK2.R2Gn"      "CCND1.R2Gn"     "PIK3R2.R2Gn"   
##  [9] "ERRFI1.R2Gn"    "hsa-mir-105-1"  "hsa-mir-105-2"  "hsa-mir-1247"  
## [13] "hsa-mir-1248"   "hsa-mir-1249"   "hsa-mir-200a"   "hsa-mir-2114"  
## [17] "hsa-mir-218-1"  "hsa-mir-301b"   "hsa-mir-326"    "hsa-mir-34b"   
## [21] "hsa-mir-3610"   "hsa-mir-3909"   "hsa-mir-511-1"  "hsa-mir-511-2" 
## [25] "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-548s"   "hsa-mir-561"   
## [29] "hsa-mir-615"    "hsa-mir-627"    "hsa-mir-642a"   "hsa-mir-891a"  
## [1] "bicluster36"
##  [1] "IGFBP2.RPPA"    "TTF1.RPPA"      "IGFBP2.R2Gn"    "ITGA2.R2Gn"    
##  [5] "COL6A1.R2Gn"    "TFRC.R2Gn"      "SYP.R2Gn"       "RET.R2Gn"      
##  [9] "hsa-mir-122"    "hsa-mir-124-2"  "hsa-mir-1248"   "hsa-mir-1249"  
## [13] "hsa-mir-1255a"  "hsa-mir-1305"   "hsa-mir-187"    "hsa-mir-2114"  
## [17] "hsa-mir-30c-1"  "hsa-mir-3173"   "hsa-mir-3187"   "hsa-mir-3199-2"
## [21] "hsa-mir-3610"   "hsa-mir-372"    "hsa-mir-433"    "hsa-mir-517a"  
## [25] "hsa-mir-551b"   "hsa-mir-585"    "hsa-mir-7-3"    "hsa-mir-876"   
## [29] "hsa-mir-9-3"   
## [1] "bicluster14"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "NF2.RPPA"       "ERBB3.R2Gn"    
##  [5] "IGFBP2.R2Gn"    "EEF2.R2Gn"      "COL6A1.R2Gn"    "SYP.R2Gn"      
##  [9] "hsa-mir-1249"   "hsa-mir-1262"   "hsa-mir-1269"   "hsa-mir-153-1" 
## [13] "hsa-mir-200a"   "hsa-mir-200b"   "hsa-mir-26a-1"  "hsa-mir-301b"  
## [17] "hsa-mir-3690"   "hsa-mir-3926-1" "hsa-mir-488"    "hsa-mir-516a-1"
## [21] "hsa-mir-516a-2" "hsa-mir-517a"   "hsa-mir-520a"   "hsa-mir-526b"  
## [25] "hsa-mir-585"    "hsa-mir-7-2"   
## [1] "bicluster17"
##  [1] "G6PD.RPPA"      "FASN.RPPA"      "TSC1.RPPA"      "TTF1.RPPA"     
##  [5] "MYH11.RPPA"     "ERBB3.R2Gn"     "PRKCD.R2Gn"     "FN1.R2Gn"      
##  [9] "PEA15.R2Gn"     "ADAR.R2Gn"      "SERPINE1.R2Gn"  "SHC1.R2Gn"     
## [13] "CCND1.R2Gn"     "ANXA7.R2Gn"     "hsa-mir-124-3"  "hsa-mir-1255a" 
## [17] "hsa-mir-1270-1" "hsa-mir-1292"   "hsa-mir-218-1"  "hsa-mir-3199-2"
## [21] "hsa-mir-3610"   "hsa-mir-3652"   "hsa-mir-3926-2" "hsa-mir-4326"  
## [25] "hsa-mir-506"    "hsa-mir-507"    "hsa-mir-508"    "hsa-mir-509-1" 
## [29] "hsa-mir-509-2"  "hsa-mir-509-3"  "hsa-mir-513a-1" "hsa-mir-513a-2"
## [33] "hsa-mir-514-1"  "hsa-mir-514-2"  "hsa-mir-514-3"  "hsa-mir-636"   
## [37] "hsa-mir-670"    "hsa-mir-760"    "hsa-mir-9-3"   
## [1] "bicluster3"
##  [1] "PDCD4.RPPA"     "ERBB3.R2Gn"     "IGFBP2.R2Gn"    "ADAR.R2Gn"     
##  [5] "SERPINE1.R2Gn"  "MYH9.R2Gn"      "HSPA1A.R2Gn"    "hsa-mir-124-3" 
##  [9] "hsa-mir-1248"   "hsa-mir-129-2"  "hsa-mir-1292"   "hsa-mir-1304"  
## [13] "hsa-mir-182"    "hsa-mir-2114"   "hsa-mir-3676"   "hsa-mir-3678"  
## [17] "hsa-mir-3682"   "hsa-mir-499"    "hsa-mir-516a-2" "hsa-mir-516b-1"
## [21] "hsa-mir-518b"   "hsa-mir-519a-2" "hsa-mir-525"    "hsa-mir-526b"  
## [25] "hsa-mir-570"    "hsa-mir-624"    "hsa-mir-7-2"    "hsa-mir-765"   
## [29] "hsa-mir-96"    
## [1] "bicluster35"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "GATA3.RPPA"     "PDCD4.RPPA"    
##  [5] "GAPDH.RPPA"     "IGFBP2.R2Gn"    "EEF2.R2Gn"      "YWHAE.R2Gn"    
##  [9] "PRKCA.R2Gn"     "PRRT2.R2Gn"     "CAV1.R2Gn"      "GAPDH.R2Gn"    
## [13] "HSPA1A.R2Gn"    "hsa-mir-105-1"  "hsa-mir-200b"   "hsa-mir-204"   
## [17] "hsa-mir-216a"   "hsa-mir-301b"   "hsa-mir-3191"   "hsa-mir-320c-1"
## [21] "hsa-mir-3926-2" "hsa-mir-3940"   "hsa-mir-488"    "hsa-mir-516b-1"
## [25] "hsa-mir-517a"   "hsa-mir-545"    "hsa-mir-552"    "hsa-mir-7-3"   
## [29] "hsa-mir-760"    "hsa-mir-891a"   "hsa-mir-937"   
## [1] "bicluster39"
##  [1] "GAPDH.RPPA"    "MSH6.RPPA"     "TFRC.RPPA"     "EEF2.R2Gn"    
##  [5] "YWHAE.R2Gn"    "PIK3R1.R2Gn"   "PRDX1.R2Gn"    "hsa-mir-105-1"
##  [9] "hsa-mir-1248"  "hsa-mir-1255a" "hsa-mir-1269"  "hsa-mir-129-2"
## [13] "hsa-mir-3928"  "hsa-mir-607"   "hsa-mir-643"   "hsa-mir-7-3"  
## [17] "hsa-mir-873"   "hsa-mir-876"   "hsa-mir-939"  
## [1] "bicluster26"
##  [1] "PTEN.RPPA"      "ATM.RPPA"       "EGFR.RPPA"      "PDCD4.RPPA"    
##  [5] "AR.RPPA"        "TFRC.RPPA"      "ERBB3.R2Gn"     "FN1.R2Gn"      
##  [9] "CDH2.R2Gn"      "ITGA2.R2Gn"     "SERPINE1.R2Gn"  "PIK3R1.R2Gn"   
## [13] "TFRC.R2Gn"      "ERRFI1.R2Gn"    "hsa-mir-1249"   "hsa-mir-1274b" 
## [17] "hsa-mir-190b"   "hsa-mir-216b"   "hsa-mir-217"    "hsa-mir-224"   
## [21] "hsa-mir-296"    "hsa-mir-3173"   "hsa-mir-3199-1" "hsa-mir-320c-2"
## [25] "hsa-mir-3662"   "hsa-mir-3923"   "hsa-mir-452"    "hsa-mir-488"   
## [29] "hsa-mir-499"    "hsa-mir-516a-1" "hsa-mir-516a-2" "hsa-mir-516b-1"
## [33] "hsa-mir-525"    "hsa-mir-548q"   "hsa-mir-561"    "hsa-mir-577"   
## [37] "hsa-mir-580"    "hsa-mir-627"    "hsa-mir-663"    "hsa-mir-675"   
## [1] "bicluster40"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "EGFR.RPPA"      "ACVRL1.RPPA"   
##  [5] "PRDX1.RPPA"     "MSH6.RPPA"      "MYH11.RPPA"     "MSH2.RPPA"     
##  [9] "IGFBP2.R2Gn"    "FN1.R2Gn"       "CDH2.R2Gn"      "EEF2.R2Gn"     
## [13] "RPS6.R2Gn"      "TGM2.R2Gn"      "MYH11.R2Gn"     "SQSTM1.R2Gn"   
## [17] "hsa-mir-1-2"    "hsa-mir-122"    "hsa-mir-1228"   "hsa-mir-1249"  
## [21] "hsa-mir-1270-1" "hsa-mir-129-1"  "hsa-mir-129-2"  "hsa-mir-200a"  
## [25] "hsa-mir-205"    "hsa-mir-224"    "hsa-mir-3166"   "hsa-mir-3170"  
## [29] "hsa-mir-3190"   "hsa-mir-3199-1" "hsa-mir-346"    "hsa-mir-3648"  
## [33] "hsa-mir-429"    "hsa-mir-452"    "hsa-mir-466"    "hsa-mir-489"   
## [37] "hsa-mir-490"    "hsa-mir-517a"   "hsa-mir-525"    "hsa-mir-526b"  
## [41] "hsa-mir-548b"   "hsa-mir-551b"   "hsa-mir-639"    "hsa-mir-656"   
## [45] "hsa-mir-665"    "hsa-mir-675"    "hsa-mir-7-2"    "hsa-mir-767"   
## [49] "hsa-mir-873"    "hsa-mir-876"    "hsa-mir-885"    "hsa-mir-937"   
## [1] "bicluster18"
##  [1] "GATA3.RPPA"     "PEA15.RPPA"     "MSH6.RPPA"      "CDH2.R2Gn"     
##  [5] "ADAR.R2Gn"      "CTNNB1.R2Gn"    "RPS6.R2Gn"      "TGM2.R2Gn"     
##  [9] "GAPDH.R2Gn"     "hsa-mir-124-3"  "hsa-mir-1254"   "hsa-mir-1255a" 
## [13] "hsa-mir-1269"   "hsa-mir-1304"   "hsa-mir-516a-1" "hsa-mir-518b"  
## [17] "hsa-mir-639"    "hsa-mir-656"   
## [1] "bicluster6"
##  [1] "G6PD.RPPA"      "IGFBP2.RPPA"    "RBM15.RPPA"     "EGFR.RPPA"     
##  [5] "IGFBP2.R2Gn"    "NDRG1.R2Gn"     "HSPA1A.R2Gn"    "hsa-mir-1228"  
##  [9] "hsa-mir-1269"   "hsa-mir-1270-1" "hsa-mir-1292"   "hsa-mir-138-1" 
## [13] "hsa-mir-138-2"  "hsa-mir-217"    "hsa-mir-3144"   "hsa-mir-3614"  
## [17] "hsa-mir-585"    "hsa-mir-605"    "hsa-mir-873"    "hsa-mir-939"   
## [1] "bicluster30"
##  [1] "EGFR.RPPA"      "INPP4B.RPPA"    "ACVRL1.RPPA"    "PRDX1.RPPA"    
##  [5] "TFRC.RPPA"      "ADAR.R2Gn"      "CTNNB1.R2Gn"    "RPS6.R2Gn"     
##  [9] "SHC1.R2Gn"      "CCND1.R2Gn"     "hsa-mir-105-2"  "hsa-mir-124-1" 
## [13] "hsa-mir-1270-1" "hsa-mir-1270-2" "hsa-mir-1292"   "hsa-mir-133b"  
## [17] "hsa-mir-153-1"  "hsa-mir-206"    "hsa-mir-2114"   "hsa-mir-3610"  
## [21] "hsa-mir-3614"   "hsa-mir-3678"   "hsa-mir-3917"   "hsa-mir-499"   
## [25] "hsa-mir-519a-2" "hsa-mir-570"    "hsa-mir-577"    "hsa-mir-639"   
## [29] "hsa-mir-767"   
## [1] "bicluster8"
##  [1] "G6PD.RPPA"      "ASNS.RPPA"      "PTEN.RPPA"      "ATM.RPPA"      
##  [5] "MYH11.RPPA"     "TFRC.RPPA"      "KDR.R2Gn"       "ERBB3.R2Gn"    
##  [9] "FN1.R2Gn"       "AKT2.R2Gn"      "EEF2.R2Gn"      "SERPINE1.R2Gn" 
## [13] "TGM2.R2Gn"      "hsa-mir-122"    "hsa-mir-3170"   "hsa-mir-3191"  
## [17] "hsa-mir-346"    "hsa-mir-3652"   "hsa-mir-3909"   "hsa-mir-519a-2"
## [21] "hsa-mir-520a"   "hsa-mir-548s"   "hsa-mir-592"    "hsa-mir-639"   
## [25] "hsa-mir-765"   
## [1] "bicluster11"
##  [1] "G6PD.RPPA"      "VHL.RPPA"       "AR.RPPA"        "G6PD.R2Gn"     
##  [5] "TGM2.R2Gn"      "COL6A1.R2Gn"    "hsa-mir-1270-1" "hsa-mir-129-2" 
##  [9] "hsa-mir-26a-1"  "hsa-mir-320c-1" "hsa-mir-3676"   "hsa-mir-516a-1"
## [13] "hsa-mir-516a-2" "hsa-mir-518b"   "hsa-mir-639"    "hsa-mir-940"   
## [1] "bicluster15"
##  [1] "PDCD4.RPPA"     "VHL.RPPA"       "ERRFI1.R2Gn"    "hsa-mir-1270-1"
##  [5] "hsa-mir-2114"   "hsa-mir-3173"   "hsa-mir-346"    "hsa-mir-516a-1"
##  [9] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-518b"   "hsa-mir-548b"  
## [13] "hsa-mir-551b"   "hsa-mir-552"    "hsa-mir-570"    "hsa-mir-670"   
## [17] "hsa-mir-7-2"    "hsa-mir-765"    "hsa-mir-876"   
## [1] "bicluster32"
##  [1] "RBM15.RPPA"    "DIRAS3.R2Gn"   "ERBB3.R2Gn"    "IGFBP2.R2Gn"  
##  [5] "FN1.R2Gn"      "SERPINE1.R2Gn" "CTNNB1.R2Gn"   "RPS6.R2Gn"    
##  [9] "HSPA1A.R2Gn"   "IDH3A.R2Gn"    "hsa-mir-105-2" "hsa-mir-2114" 
## [13] "hsa-mir-3170"  "hsa-mir-561"   "hsa-mir-570"   "hsa-mir-708"  
## [17] "hsa-mir-760"  
## [1] "bicluster33"
##  [1] "FN1.R2Gn"       "GAPDH.R2Gn"     "HSPA1A.R2Gn"    "hsa-mir-1247"  
##  [5] "hsa-mir-137"    "hsa-mir-138-1"  "hsa-mir-196a-2" "hsa-mir-216b"  
##  [9] "hsa-mir-3173"   "hsa-mir-3191"   "hsa-mir-3193"   "hsa-mir-3678"  
## [13] "hsa-mir-383"    "hsa-mir-499"    "hsa-mir-516a-1" "hsa-mir-516a-2"
## [17] "hsa-mir-516b-1" "hsa-mir-517a"   "hsa-mir-526b"   "hsa-mir-615"   
## [21] "hsa-mir-765"    "hsa-mir-939"    "hsa-mir-940"   
## [1] "bicluster24"
##  [1] "EGFR.RPPA"      "TTF1.RPPA"      "XBP1.RPPA"      "MSH6.RPPA"     
##  [5] "NF2.RPPA"       "PDK1.RPPA"      "CTNNB1.R2Gn"    "RPS6.R2Gn"     
##  [9] "PRKCA.R2Gn"     "PIK3R1.R2Gn"    "NDRG1.R2Gn"     "HSPA1A.R2Gn"   
## [13] "CHGA.R2Gn"      "hsa-mir-1197"   "hsa-mir-1258"   "hsa-mir-1270-1"
## [17] "hsa-mir-1304"   "hsa-mir-1305"   "hsa-mir-200a"   "hsa-mir-205"   
## [21] "hsa-mir-3610"   "hsa-mir-3909"   "hsa-mir-507"    "hsa-mir-511-1" 
## [25] "hsa-mir-516a-1" "hsa-mir-516b-1" "hsa-mir-548q"   "hsa-mir-548v"  
## [29] "hsa-mir-552"    "hsa-mir-570"    "hsa-mir-577"    "hsa-mir-605"   
## [33] "hsa-mir-653"    "hsa-mir-656"    "hsa-mir-937"
extracted_by_bic_result = list("1bc" = f1_bic,
                          "2bc" = f2_bic,
                         "3bc" = f3_bic,
                         "5bc" = f5_bic,
                         "10bc" = f10_bic,
                         "15bc" = f15_bic,
                         "20bc" = f20_bic,
                         "35bc" = f35_bic,
                         "43bc" = f43_bic)

saveRDS(extracted_by_bic_result, file = "data/sel_features/results_fabia_extracted_by_bic.rds")

plotting:

plot.fabia.selbyBic = function(fabia_result, fabia_bic, bc, abs.ymax = 2.1) {
  total_bc = fabia_result@p1
  if (bc > total_bc) {
    stop("Requested bicluster number exceeds the total available biclusters.")
  }
  FABIA.L = as.data.frame(fabia_result@L)
  FABIA.L$var = rownames(FABIA.L)
  biclusterx = paste("bicluster", bc, sep = "")
  FABIA.L$in.bic = FABIA.L$var %in% names(fabia_bic[[biclusterx]])

  FABIA.L$dataset = sapply(FABIA.L$var, retrieve.dataset.type)
  #FABIA.L
  ggplot(data = FABIA.L, aes_string(x= "var", y = biclusterx, color = "in.bic", shape="dataset")) +
  geom_point() +
  #geom_text(nudge_y = .04, alpha = 1, size = 3) +
  theme(
    axis.title.x = element_blank(),
    axis.text.x = element_blank(),
    axis.ticks.x = element_blank()
  ) +
  ggtitle(paste(total_bc , "Biclusters")) +
  xlab(biclusterx) +
  ylim(-abs.ymax, abs.ymax)
  
  #if (perc5line) {
  #  perc5 = min(FABIA.L[FABIA.L$top5 == T, biclusterx])
  #  p = p + geom_hline(yintercept = perc5)
  #}
  #p
}

1 Bicluster

plot.fabia.selbyBic(fabia_1, f1_bic, 1, abs.ymax = 1)

2 Biclusters

plot.fabia.selbyBic(fabia_2, f2_bic, 1, abs.ymax = 1)

plot.fabia.selbyBic(fabia_2, f2_bic, 2, abs.ymax = 1)

3 Biclusters

plot.fabia.selbyBic(fabia_3, f3_bic, 1, abs.ymax = 1.5)

plot.fabia.selbyBic(fabia_3, f3_bic, 2, abs.ymax = 1.5)

plot.fabia.selbyBic(fabia_3, f3_bic, 3, abs.ymax = 1.5)

5 Biclusters

plot.fabia.selbyBic(fabia_5, f5_bic, 1, abs.ymax = 2)

plot.fabia.selbyBic(fabia_5, f5_bic, 2, abs.ymax = 2)

plot.fabia.selbyBic(fabia_5, f5_bic, 3, abs.ymax = 2)

plot.fabia.selbyBic(fabia_5, f5_bic, 4, abs.ymax = 2)

plot.fabia.selbyBic(fabia_5, f5_bic, 5, abs.ymax = 2)

10 Biclusters

plot.fabia.selbyBic(fabia_10, f10_bic, 1)

plot.fabia.selbyBic(fabia_10, f10_bic, 2)

plot.fabia.selbyBic(fabia_10, f10_bic, 3)

plot.fabia.selbyBic(fabia_10, f10_bic, 4)

plot.fabia.selbyBic(fabia_10, f10_bic, 5)

plot.fabia.selbyBic(fabia_10, f10_bic, 6)

plot.fabia.selbyBic(fabia_10, f10_bic, 7)

plot.fabia.selbyBic(fabia_10, f10_bic, 8)

plot.fabia.selbyBic(fabia_10, f10_bic, 9)

plot.fabia.selbyBic(fabia_10, f10_bic, 10)

### Manual calculation and display of thres L.

FABIA does not return the threshold L. We will use the code also used in the ensemble document.

get.FABIA.tL = function(FABIA.result, tZ.FABIA = 0.5) {
  
  threasZ.fabia= tZ.FABIA

  tt = 0
  for (i in 1:ncol(L(FABIA.result))) {
    tt = tt + sum(L(FABIA.result)[,i]^2) * sum(Z(FABIA.result)[i,]^2)
  }
  tt = tt/(as.double(nrow(L(FABIA.result))) * as.double(ncol(L(FABIA.result))) * as.double(ncol(Z(FABIA.result))))
  threasL.fabia = sqrt(tt) / threasZ.fabia
  threasL.fabia
}
print(paste(1, "Bicluster, thresL =", get.FABIA.tL(fabia_1)))
## [1] "1 Bicluster, thresL = 0.410763033438725"
print(paste(2, "Biclusters, thresL =", get.FABIA.tL(fabia_2)))
## [1] "2 Biclusters, thresL = 0.370328611007706"
print(paste(3, "Biclusters, thresL =", get.FABIA.tL(fabia_3)))
## [1] "3 Biclusters, thresL = 0.635805852508974"
print(paste(5, "Biclusters, thresL =", get.FABIA.tL(fabia_5)))
## [1] "5 Biclusters, thresL = 0.745039315974718"
print(paste(10, "Biclusters, thresL =", get.FABIA.tL(fabia_10)))
## [1] "10 Biclusters, thresL = 0.671081794414907"
print(paste(15, "Biclusters, thresL =", get.FABIA.tL(fabia_15)))
## [1] "15 Biclusters, thresL = 0.588938281330448"
print(paste(20, "Biclusters, thresL =", get.FABIA.tL(fabia_20)))
## [1] "20 Biclusters, thresL = 0.567912339284411"
print(paste(35, "Biclusters, thresL =", get.FABIA.tL(fabia_35)))
## [1] "35 Biclusters, thresL = 0.350658418759497"
print(paste(43, "Biclusters, thresL =", get.FABIA.tL(fabia_43)))
## [1] "43 Biclusters, thresL = 0.218550086830506"

E Top n% samples for each Bicluster

top_x_percent.s = function(fabia.result, perct = 5, print = F, show.factor = F) {
  quantile = 1 - perct * 0.01
  fabia_Z = t(fabia.result@Z)
  
  out.list = vector("list", length = ncol(fabia_Z))
  names(out.list) = colnames(fabia_Z)
  
  for (i in 1:ncol(fabia_Z)) {
    Z_curr = fabia_Z[,i]
    quant = quantile(abs(Z_curr), quantile)
    sel = abs(Z_curr) >= quant
    out.list[[i]] = Z_curr[sel]
    
    if(print) {
      print(colnames(fabia_Z)[i])
      if (show.factor) {
        print(Z_curr[sel])
      } else {
        print(names(Z_curr[sel]))
      }
    }
  }
  
  out.list
}

#boxplot(fabia_1@L)

Top 5%

f1_5.s = top_x_percent.s(fabia_1)
f2_5.s = top_x_percent.s(fabia_2)
f3_5.s = top_x_percent.s(fabia_3)
f5_5.s = top_x_percent.s(fabia_5)
f10_5.s = top_x_percent.s(fabia_10)
f15_5.s = top_x_percent.s(fabia_15)
f20_5.s = top_x_percent.s(fabia_20)
f35_5.s = top_x_percent.s(fabia_35)
f43_5.s = top_x_percent.s(fabia_43)

Top 10%

f1_10.s = top_x_percent.s(fabia_1, perct = 10)
f2_10.s = top_x_percent.s(fabia_2, perct = 10)
f3_10.s = top_x_percent.s(fabia_3, perct = 10)
f5_10.s = top_x_percent.s(fabia_5, perct = 10)
f10_10.s = top_x_percent.s(fabia_10, perct = 10)
f15_10.s = top_x_percent.s(fabia_15, perct = 10)
f20_10.s = top_x_percent.s(fabia_20, perct = 10)
f35_10.s = top_x_percent.s(fabia_35, perct = 10)
f43_10.s = top_x_percent.s(fabia_43, perct = 10)

Top 25%

f1_25.s = top_x_percent.s(fabia_1, perct = 25)
f2_25.s = top_x_percent.s(fabia_2, perct = 25)
f3_25.s = top_x_percent.s(fabia_3, perct = 25)
f5_25.s = top_x_percent.s(fabia_5, perct = 25)
f10_25.s = top_x_percent.s(fabia_10, perct = 25)
f15_25.s = top_x_percent.s(fabia_15, perct = 25)
f20_25.s = top_x_percent.s(fabia_20, perct = 25)
f35_25.s = top_x_percent.s(fabia_35, perct = 25)
f43_25.s = top_x_percent.s(fabia_43, perct = 25)

C. Visualization of top x% (Max 10 Biclusters)

Check max and min value of loadings in order to create symmetrical plots:

max_fZ_all = max(max(fabia_1@Z),
             max(fabia_2@Z),
             max(fabia_3@Z),
             max(fabia_5@Z),
             max(fabia_10@Z),
             max(fabia_15@Z),
             max(fabia_20@Z),
             max(fabia_35@Z),
             max(fabia_43@Z)
)
min_fZ_all = min(min(fabia_1@Z),
             min(fabia_2@Z),
             min(fabia_3@Z),
             min(fabia_5@Z),
             min(fabia_10@Z),
             min(fabia_15@Z),
             min(fabia_20@Z),
             min(fabia_35@Z),
             min(fabia_43@Z)
)
c(max_fZ_all, min_fZ_all)
## [1]  4.170627 -3.762122

The limits of y axis will be (-5, 5) in order to make them symmetrical.

plot.fabia.topx.s = function(fabia_result, fabia_top5, fabia_top10, fabia_top25, bc, abs.ymax = 5) {
  total_bc = fabia_result@p1
  if (bc > total_bc) {
    stop("Requested bicluster number exceeds the total available biclusters.")
  }
  FABIA.Z = as.data.frame(t(fabia_result@Z))
  FABIA.Z$MID = rownames(FABIA.Z)
  biclusterx = paste("bicluster", bc, sep = "")
  FABIA.Z$top5 = FABIA.Z$MID %in% names(fabia_top5[[biclusterx]])
  FABIA.Z$top10 = FABIA.Z$MID %in% names(fabia_top10[[biclusterx]])
  FABIA.Z$top25 = FABIA.Z$MID %in% names(fabia_top25[[biclusterx]])
  FABIA.Z$top = NA
  for(i in 1:nrow(FABIA.Z)) {
    if (FABIA.Z[i,]$top25 == F) {
      FABIA.Z[i,]$top = NA
    } else if (FABIA.Z[i,]$top10 == F) {
      FABIA.Z[i,]$top = "Top 11% ~ 25%"
    } else if (FABIA.Z[i,]$top5 == F){
      FABIA.Z[i,]$top = "Top 06% ~ 10%"
    } else {
      FABIA.Z[i,]$top = "Top 05%"
    }
  }
  #print(FABIA.Z)
  ggplot(data = FABIA.Z, aes_string(x= "MID", y = biclusterx, color = "top", label = "MID")) +
  geom_point() +
  geom_text_repel(data=subset(FABIA.Z, !is.na(top)), alpha = 1, size = 3, fontface = "bold",
                  force = 200, force_pull = 1,
                  max.overlaps = 50) +
  theme(
    axis.title.x = element_blank(),
    axis.text.x = element_blank(),
    axis.ticks.x = element_blank()
  ) +
  ggtitle(paste(total_bc , "Biclusters")) +
  xlab(biclusterx) +
  ylim(-abs.ymax, abs.ymax)
  
  #if (perc5line) {
  #  perc5 = min(FABIA.L[FABIA.L$top5 == T, biclusterx])
  #  p = p + geom_hline(yintercept = perc5)
  #}
  #p
}

1 Bicluster

plot.fabia.topx.s(fabia_1, f1_5.s, f1_10.s, f1_25.s, bc = 1)

2 Biclusters

plot.fabia.topx.s(fabia_2, f2_5.s, f2_10.s, f2_25.s, bc = 1)

plot.fabia.topx.s(fabia_2, f2_5.s, f2_10.s, f2_25.s, bc = 2)

### 3 Biclusters

plot.fabia.topx.s(fabia_3, f3_5.s, f3_10.s, f3_25.s, bc = 1)

plot.fabia.topx.s(fabia_3, f3_5.s, f3_10.s, f3_25.s, bc = 2)

plot.fabia.topx.s(fabia_3, f3_5.s, f3_10.s, f3_25.s, bc = 3)

5 Biclusters

plot.fabia.topx.s(fabia_5, f5_5.s, f5_10.s, f5_25.s, bc = 1)

plot.fabia.topx.s(fabia_5, f5_5.s, f5_10.s, f5_25.s, bc = 2)

plot.fabia.topx.s(fabia_5, f5_5.s, f5_10.s, f5_25.s, bc = 3)

plot.fabia.topx.s(fabia_5, f5_5.s, f5_10.s, f5_25.s, bc = 4)

plot.fabia.topx.s(fabia_5, f5_5.s, f5_10.s, f5_25.s, bc = 5)

10 Biclusters

plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 1)

plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 2)

plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 3)

plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 4)

plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 5)

plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 6)

plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 7)

plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 8)

plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 9)

plot.fabia.topx.s(fabia_10, f10_5.s, f10_10.s, f10_25.s, bc = 10)